Rh1CG295400

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014337
Physical Location & Seq
Forward (+)
56843903 .. 56844907
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG295400.1

Sequence Viewer

Length: 1005 bp
ATGCCGCACCCGATTTCGGAGGCCAACGAGCAGAGCCCCTTTGGCGGCTTAACCGCCGAAGAGTTCTACTCCCGCCACTCCGTCTCCCACGGCTCCGACTACCTCACCAACGCCAGAGGCCTCAAGCTCTTCACTCAGTGGTGGACCCCTCTCCCTCCGGCGAAGGTCCTCGGCGTCCTCGCCGTCGTCCACGGCTTCACCGGCGAGACCAGCTGGTTCGTCCAGCTCACCGCCGTCCACTTCGCCAAGGCCGGCTTCGCCGTCTGCGCCATCGACCACCAGGGCCACGGCTTCTCCGACGGCCTCGTCGCCCACATCCCCGACATCAACCCCGTCGTCGACGACTGCACTTCCTTCTTCGAGTCCTTCCGCGCTCGCCACGCTCCGTCGCTGCCGTCCTTCCTGTACTCCGAGTCCCTCGGCGGCGCGATTGCGATTCTCGTCACGCTCCGCCGCGTGGGGAGGCCCTGGGACGGGCTCATCCTCAACGGCGCCATGTGCGGGATCAGCGCCAAGTTCAAGCCGCCGTGGCCGCTCGAGCACCTGCTCTTCCTCGTCGCCGCGGTCATCCCGACGTGGCGCGTCGTCCCCACGCGGGGGTCGCTGCCGGACGTGTCGTTCAAGGAGGAGTGGAAGCGGAAGCTGGCGATGTCCTGCCCGAGGAGGCCGCTCGCCAAGCCACGCGCCGCCACGGCTCTTGAGCTGCTCAGAGTCTGCAAGGAGCTGCAGGGGAAGTTCGAGGAGGTGGAGGTGCCGCTGCTGATCGTCCACGGCGGAGAGGACGTCGTTTGCGACCCCGCGTGCGTGGAGGAGCTCTACAAGCGCGCGTCGAGTAAGGACAAGACCCTGAGGATCCACCCCGGCATGTGGCACCAGTTGATCGGTGAGACCCCGGAGAATGTAGAGTTGGTTTTCGGAGAAATGGTGGACTGGCTTCGTACCAGAGCCGCACGCGCCTCCGATAATGGTGGTGCCCAGTCGGATTTCCTTGTTAGTCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

334

Amino Acids

36.81

Weight (kDa)

6.5

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 57 - 297 1.2e-56 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 62 - 300 4.2e-10 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14980 AT5G19290
fragaria_vesca FvH4_7g19610
malus_domestica MD01G1108700.v1.1 MD07G1174800.v1.1
prunus_persica Prupe.2G213900_v2.0.a1
pyrus_communis pycom01g13570 pycom07g16920
rosa_chinensis RchiOBHm_Chr1g0363421
rosa_laevigata RLG00000027569
rosa_multiflora Rmu_sc0000339.1_g000010 Rmu_sc0004458.1_g000006
rosa_rugosa Rorug01G0306600
rosa_samantha Rh1AG315700 Rh1CG295400 Rh1DG310100
rosa_wichuraiana Rw1G027960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 552
AasI GACNNNNNNGTC 1 cut(s) 305
AatII GACGTC 1 cut(s) 786
Acc36I ACCTGC 1 cut(s) 552
AccB1I GGYRCC 4 cut(s) 491, 751, 870, 971
AccBSI CCGCTC 2 cut(s) 535, 670
AccI GTMKAC 1 cut(s) 339
AclWI GGATC 3 cut(s) 512, 847, 860
AcoI YGGCCR 1 cut(s) 530
AcyI GRCGYC 3 cut(s) 174, 492, 783
AdeI CACNNNGTG 1 cut(s) 138
AfaI GTAC 2 cut(s) 407, 940
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 2 cut(s) 520, 622
AjiI CACGTC 2 cut(s) 576, 613
AjnI CCWGG 2 cut(s) 279, 467
AjuI GAANNNNNNNTTGG 4 cut(s) 239, 271, 890, 922
AloI GAACNNNNNNTCC 2 cut(s) 602, 634
AluBI AGCT 7 cut(s) 127, 213, 226, 643, 703, 724, 814
AluI AGCT 7 cut(s) 127, 213, 226, 643, 703, 724, 814
Alw21I GWGCWC 2 cut(s) 543, 816
Alw26I GTCTC 3 cut(s) 88, 200, 881
AlwI GGATC 3 cut(s) 512, 847, 860
AlwNI CAGNNNCTG 1 cut(s) 714
Ama87I CYCGRG 2 cut(s) 536, 658
AoxI GGCC 8 cut(s) 21, 118, 249, 283, 301, 464, 530, 665
ApeKI GCWGC 5 cut(s) 391, 604, 703, 724, 757
AspS9I GGNCC 4 cut(s) 144, 166, 283, 465
AsuC2I CCSGG 2 cut(s) 861, 893
AsuHPI GGTGA 4 cut(s) 97, 190, 220, 896
AvaI CYCGRG 2 cut(s) 536, 658
AvaII GGWCC 2 cut(s) 144, 166
AxyI CCTNAGG 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 976
BamHI GGATCC 1 cut(s) 852
BanI GGYRCC 4 cut(s) 491, 751, 870, 971
BanII GRGCYC 3 cut(s) 38, 480, 816
Bbv12I GWGCWC 2 cut(s) 543, 816
BbvI GCAGC 5 cut(s) 378, 591, 690, 711, 744
BccI CCATC 1 cut(s) 278
BciT130I CCWGG 2 cut(s) 281, 469
BcnI CCSGG 2 cut(s) 861, 893
BcoDI GTCTC 3 cut(s) 88, 200, 881
BfmI CTRYAG 1 cut(s) 725
BfoI RGCGCY 2 cut(s) 495, 513
BfuAI ACCTGC 1 cut(s) 552
BglI GCCNNNNNGGC 3 cut(s) 42, 529, 692
Bme1390I CCNGG 4 cut(s) 281, 469, 861, 893
Bme18I GGWCC 2 cut(s) 144, 166
BmeT110I CYCGRG 2 cut(s) 536, 658
BmgBI CACGTC 2 cut(s) 576, 613
BmgT120I GGNCC 4 cut(s) 144, 166, 283, 465
BmiI GGNNCC 7 cut(s) 94, 146, 493, 753, 854, 872, 973
BmrFI CCNGG 4 cut(s) 281, 469, 861, 893
BmrI ACTGGG 1 cut(s) 970
BmuI ACTGGG 1 cut(s) 970
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpuEI CTTGAG 2 cut(s) 107, 719
BpuMI CCSGG 2 cut(s) 861, 893
BsaHI GRCGYC 3 cut(s) 174, 492, 783
BsaI GGTCTC 2 cut(s) 200, 881
BsaXI ACNNNNNCTCC 8 cut(s) 68, 98, 278, 308, 768, 798, 909, 939
Bse118I RCCGGY 2 cut(s) 200, 251
Bse1I ACTGG 3 cut(s) 874, 935, 976
Bse21I CCTNAGG 1 cut(s) 848
BseBI CCWGG 2 cut(s) 281, 469
BseGI GGATG 3 cut(s) 315, 480, 567
BseMII CTCAG 3 cut(s) 149, 721, 839
BseNI ACTGG 3 cut(s) 874, 935, 976
BsePI GCGCGC 1 cut(s) 823
BseRI GAGGAG 4 cut(s) 641, 676, 755, 824
BseSI GKGCMC 1 cut(s) 976
BseXI GCAGC 5 cut(s) 378, 591, 690, 711, 744
BsgI GTGCAG 1 cut(s) 331
BshFI GGCC 8 cut(s) 23, 120, 251, 285, 303, 466, 532, 667
BshNI GGYRCC 4 cut(s) 491, 751, 870, 971
BsiHKAI GWGCWC 2 cut(s) 543, 816
BsiHKCI CYCGRG 2 cut(s) 536, 658
BsiSI CCGG 6 cut(s) 158, 201, 252, 608, 861, 893
BslFI GGGAC 3 cut(s) 400, 485, 572
BsmAI GTCTC 3 cut(s) 88, 200, 881
BsmBI CGTCTC 1 cut(s) 88
BsmFI GGGAC 3 cut(s) 400, 485, 572
BsnI GGCC 8 cut(s) 23, 120, 251, 285, 303, 466, 532, 667
Bso31I GGTCTC 2 cut(s) 200, 881
BsoBI CYCGRG 2 cut(s) 536, 658
Bsp1286I GDGCHC 5 cut(s) 38, 480, 543, 816, 976
Bsp143I GATC 4 cut(s) 504, 762, 852, 879
BspANI GGCC 8 cut(s) 23, 120, 251, 285, 303, 466, 532, 667
BspCNI CTCAG 3 cut(s) 148, 720, 840
BspLI GGNNCC 7 cut(s) 94, 146, 493, 753, 854, 872, 973
BspMAI CTGCAG 1 cut(s) 729
BspMI ACCTGC 1 cut(s) 552
BspPI GGATC 3 cut(s) 512, 847, 860
BspQI GCTCTTC 2 cut(s) 134, 554
BspT107I GGYRCC 4 cut(s) 491, 751, 870, 971
BspTNI GGTCTC 2 cut(s) 200, 881
BsrBI CCGCTC 2 cut(s) 535, 670
BsrFI RCCGGY 2 cut(s) 200, 251
BsrI ACTGG 3 cut(s) 874, 935, 976
BssAI RCCGGY 2 cut(s) 200, 251
BssHII GCGCGC 1 cut(s) 823
BssMI GATC 4 cut(s) 504, 762, 852, 879
BssNI GRCGYC 3 cut(s) 174, 492, 783
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 281, 469
Bst6I CTCTTC 3 cut(s) 54, 134, 554
BstACI GRCGYC 3 cut(s) 174, 492, 783
BstC8I GCNNGC 7 cut(s) 253, 376, 645, 672, 802, 825, 952
BstDEI CTNAG 3 cut(s) 135, 707, 848
BstDSI CCRYGG 7 cut(s) 88, 190, 286, 527, 561, 690, 769
BstENI CCTNNNNNAGG 1 cut(s) 658
BstF5I GGATG 3 cut(s) 315, 480, 567
BstH2I RGCGCY 2 cut(s) 495, 513
BstKTI GATC 4 cut(s) 507, 765, 855, 882
BstMAI GTCTC 3 cut(s) 88, 200, 881
BstMBI GATC 4 cut(s) 504, 762, 852, 879
BstNI CCWGG 2 cut(s) 281, 469
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 4 cut(s) 279, 467, 859, 891
BstSFI CTRYAG 1 cut(s) 725
BstSLI GKGCMC 1 cut(s) 976
BstV1I GCAGC 5 cut(s) 378, 591, 690, 711, 744
BstX2I RGATCY 1 cut(s) 852
BstYI RGATCY 1 cut(s) 852
Bsu36I CCTNAGG 1 cut(s) 848
BsuRI GGCC 8 cut(s) 23, 120, 251, 285, 303, 466, 532, 667
BtgI CCRYGG 7 cut(s) 88, 190, 286, 527, 561, 690, 769
BtgZI GCGATG 1 cut(s) 662
BtrI CACGTC 2 cut(s) 576, 613
BtsCI GGATG 3 cut(s) 315, 480, 567
BtsIMutI CAGTG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 552
Cac8I GCNNGC 7 cut(s) 253, 376, 645, 672, 802, 825, 952
CaiI CAGNNNCTG 1 cut(s) 714
Cfr10I RCCGGY 2 cut(s) 200, 251
Cfr13I GGNCC 4 cut(s) 144, 166, 283, 465
Cfr42I CCGCGG 1 cut(s) 564
CseI GACGC 3 cut(s) 163, 571, 816
Csp6I GTAC 2 cut(s) 406, 939
CspCI CAANNNNNGTGG 2 cut(s) 679, 714
CviAII CATG 2 cut(s) 496, 865
CviQI GTAC 2 cut(s) 406, 939
DdeI CTNAG 3 cut(s) 135, 707, 848
DinI GGCGCC 1 cut(s) 493
DpnI GATC 4 cut(s) 506, 764, 854, 881
DpnII GATC 4 cut(s) 504, 762, 852, 879
DraIII CACNNNGTG 1 cut(s) 138
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 530
Eam1104I CTCTTC 3 cut(s) 54, 134, 554
EarI CTCTTC 3 cut(s) 54, 134, 554
EciI GGCGGA 2 cut(s) 440, 789
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 120
Eco24I GRGCYC 3 cut(s) 38, 480, 816
Eco31I GGTCTC 2 cut(s) 200, 881
Eco47I GGWCC 2 cut(s) 144, 166
Eco53kI GAGCTC 1 cut(s) 814
Eco81I CCTNAGG 1 cut(s) 848
Eco88I CYCGRG 2 cut(s) 536, 658
EcoICRI GAGCTC 1 cut(s) 814
EcoNI CCTNNNNNAGG 1 cut(s) 658
EcoO109I RGGNCCY 2 cut(s) 166, 465
EcoRII CCWGG 2 cut(s) 279, 467
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 3 cut(s) 38, 480, 816
EgeI GGCGCC 1 cut(s) 493
EheI GGCGCC 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 88
FaeI CATG 2 cut(s) 499, 868
FaiI YATR 3 cut(s) 497, 866, 1003
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 3 cut(s) 400, 485, 572
FatI CATG 2 cut(s) 495, 864
FauI CCCGC 4 cut(s) 80, 494, 588, 805
FblI GTMKAC 1 cut(s) 339
FokI GGATG 3 cut(s) 302, 467, 554
FriOI GRGCYC 3 cut(s) 38, 480, 816
HaeII RGCGCY 2 cut(s) 495, 513
HaeIII GGCC 8 cut(s) 23, 120, 251, 285, 303, 466, 532, 667
HapII CCGG 6 cut(s) 158, 201, 252, 608, 861, 893
HgaI GACGC 3 cut(s) 163, 571, 816
Hin1I GRCGYC 3 cut(s) 174, 492, 783
Hin1II CATG 2 cut(s) 499, 868
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 4 cut(s) 362, 413, 436, 711
HpaII CCGG 6 cut(s) 158, 201, 252, 608, 861, 893
HphI GGTGA 4 cut(s) 97, 190, 220, 896
Hpy166II GTNNAC 6 cut(s) 144, 190, 238, 340, 769, 928
Hpy188I TCNGA 8 cut(s) 19, 97, 298, 412, 710, 917, 961, 982
Hpy188III TCNNGA 2 cut(s) 571, 698
Hpy8I GTNNAC 6 cut(s) 144, 190, 238, 340, 769, 928
HpyAV CCTTC 4 cut(s) 157, 364, 376, 409
HpyCH4IV ACGT 3 cut(s) 575, 612, 783
HpyCH4V TGCA 3 cut(s) 348, 717, 727
HpyF3I CTNAG 3 cut(s) 135, 707, 848
HpySE526I ACGT 3 cut(s) 575, 612, 783
Hsp92I GRCGYC 3 cut(s) 174, 492, 783
Hsp92II CATG 2 cut(s) 499, 868
KasI GGCGCC 1 cut(s) 491
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
KspI CCGCGG 1 cut(s) 564
Kzo9I GATC 4 cut(s) 504, 762, 852, 879
LguI GCTCTTC 2 cut(s) 134, 554
LmnI GCTCC 5 cut(s) 98, 388, 453, 721, 811
Lsp1109I GCAGC 5 cut(s) 378, 591, 690, 711, 744
MaeII ACGT 3 cut(s) 575, 612, 783
MaeIII GTNAC 1 cut(s) 442
MalI GATC 4 cut(s) 506, 764, 854, 881
MbiI CCGCTC 2 cut(s) 535, 670
MboI GATC 4 cut(s) 504, 762, 852, 879
MboII GAAGA 4 cut(s) 71, 121, 349, 541
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 5 cut(s) 38, 480, 543, 816, 976
Mly113I GGCGCC 1 cut(s) 492
MlyI GAGTC 3 cut(s) 371, 422, 720
MmeI TCCRAC 3 cut(s) 120, 321, 960
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 1 cut(s) 50
MspA1I CMGCKG 3 cut(s) 213, 563, 757
MspI CCGG 6 cut(s) 158, 201, 252, 608, 861, 893
MspR9I CCNGG 4 cut(s) 281, 469, 861, 893
MvaI CCWGG 2 cut(s) 281, 469
NaeI GCCGGC 1 cut(s) 253
NarI GGCGCC 1 cut(s) 492
NciI CCSGG 2 cut(s) 861, 893
NdeII GATC 4 cut(s) 504, 762, 852, 879
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 499, 868
NlaIV GGNNCC 7 cut(s) 94, 146, 493, 753, 854, 872, 973
NmeAIII GCCGAG 2 cut(s) 150, 399
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 868
PaeR7I CTCGAG 1 cut(s) 536
PaqCI CACCTGC 1 cut(s) 552
PasI CCCWGGG 1 cut(s) 468
PauI GCGCGC 1 cut(s) 823
PceI AGGCCT 1 cut(s) 120
PciSI GCTCTTC 2 cut(s) 134, 554
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 789
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 436
PleI GAGTC 3 cut(s) 370, 421, 719
PluTI GGCGCC 1 cut(s) 495
PpsI GAGTC 3 cut(s) 370, 421, 719
PpuMI RGGWCCY 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 816
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 279, 467
PspGI CCWGG 2 cut(s) 279, 467
PspN4I GGNNCC 7 cut(s) 94, 146, 493, 753, 854, 872, 973
PspPI GGNCC 4 cut(s) 144, 166, 283, 465
PspPPI RGGWCCY 1 cut(s) 166
PspXI VCTCGAGB 1 cut(s) 536
PstI CTGCAG 1 cut(s) 729
PstNI CAGNNNCTG 1 cut(s) 714
PsuI RGATCY 1 cut(s) 852
PteI GCGCGC 1 cut(s) 823
PvuII CAGCTG 1 cut(s) 213
RsaI GTAC 2 cut(s) 407, 940
RsaNI GTAC 2 cut(s) 406, 939
SacI GAGCTC 1 cut(s) 816
SacII CCGCGG 1 cut(s) 564
SalI GTCGAC 1 cut(s) 338
SapI GCTCTTC 2 cut(s) 134, 554
SaqAI TTAA 1 cut(s) 50
Sau3AI GATC 4 cut(s) 504, 762, 852, 879
Sau96I GGNCC 4 cut(s) 144, 166, 283, 465
SchI GAGTC 3 cut(s) 371, 422, 720
ScrFI CCNGG 4 cut(s) 281, 469, 861, 893
SduI GDGCHC 5 cut(s) 38, 480, 543, 816, 976
SfcI CTRYAG 1 cut(s) 725
SfoI GGCGCC 1 cut(s) 493
Sfr274I CTCGAG 1 cut(s) 536
Sfr303I CCGCGG 1 cut(s) 564
SgrAI CRCCGGYG 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 564
SgrDI CGTCGACG 1 cut(s) 338
SinI GGWCC 2 cut(s) 144, 166
SlaI CTCGAG 1 cut(s) 536
SmlI CTYRAG 3 cut(s) 122, 536, 698
SmoI CTYRAG 3 cut(s) 122, 536, 698
SseBI AGGCCT 1 cut(s) 120
SspDI GGCGCC 1 cut(s) 491
SstI GAGCTC 1 cut(s) 816
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 4 cut(s) 279, 467, 859, 891
StyI CCWWGG 1 cut(s) 246
TaiI ACGT 3 cut(s) 578, 615, 786
TaqI TCGA 6 cut(s) 273, 339, 360, 537, 738, 830
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 5 cut(s) 391, 604, 703, 724, 757
Tsp45I GTSAC 1 cut(s) 442
TspGWI ACGGA 2 cut(s) 70, 375
TspRI CASTG 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 144, 166
XagI CCTNNNNNAGG 1 cut(s) 658
XceI RCATGY 1 cut(s) 868
XhoI CTCGAG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 339
ZraI GACGTC 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.