Prupe.2G213900_v2.0.a1

Caffeoylshikimate esterase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014337
Physical Location & Seq
Forward (+)
24528305 .. 24529492
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G213900.1

Sequence Viewer

Length: 1002 bp
ATGGCGCACCCAATTGCGGAGGCGAACGACCAAAGCCCCTTCGGCTCTTTGACCCCTGACGCCTTCTATTCCCGCCACAAAGTCTCTCACGCCTCCGAGTACATCACCAATCCCAGAGGCCTCAAGCTCTTCACCCAGTGGTGGACCCCACTTCCTCCCACTCCTGTCCTCGGAACCCTGGCCATCGTCCACGGCTTCACCGGCGAGACCAGCTGGTTCGTCCAGCTCACCGCCGTCCACTTCGCCAAGTCCGGCTTCGCCGTCTGCGCCATCGACCACCAGGGCCACGGCTTCTCCGACGGCCTCGTCGCCCACATTCCCGACATCAACCCCGTCGTCGACGACTGCATCTCCTTCTTCGACTCCTTCCGCGCCCGCCACGCGCCGCCCAACCTCCCCGCCTTCATCTACGCCGAGTCCCTCGGCGGCGCGATCGCCCTACTCATCACGCTCCGACAAGGGAGTGGCGCGTGGAATGGCCTCATCCTCAACGGCGCCATGTGCGGGATCAGCGCCAAGATCAAGCCGCCGTGGCCGCTTGAGCACCTGCTCTTCCTCGTCGCGGCGGTGATCCCGACGTGGCGCGTGGTTCCTACGCGGGGGTCGCTGCCGGACCTGTCGTTCAAGGTGGAGTGGAAGCGGAGGCTGGCGCTGGCGAGCCCGAGGAGGACGGTGGCGAGGCCGCGGGCGGCGACGGCGCTTGAGCTGCTGAGGGTGTGCAAGGAGCTTCAGGCGAGGTTCGAGGAGGTGGAGGTACCGCTGCTGATCGTCCACGGCGGCGACGACCTCGTATGCGACCCCGCGTGCGTCGAGGAGCTCCACGGGCGCGCGTCGAGCAAGGACAAGACGCTGAGGATCCACGAGGGCATGTGGCACCAGCTGGTTGGTGAAACCCAGGAGGACGTCGACTTGGTGTTCGGCGAAATGGTGGCGTGGCTTCGTACGCGAGCTGAACGCGCCTCCGCCGCCGCCGCCGCCGTCGCGAACGGTGGCGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko01100 ko04714 ko04723 ko04923 map00561 map01100 map04714 map04723 map04923
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

334

Amino Acids

36.25

Weight (kDa)

6.53

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14980 AT5G19290
fragaria_vesca FvH4_7g19610
malus_domestica MD01G1108700.v1.1 MD07G1174800.v1.1
prunus_persica Prupe.2G213900_v2.0.a1
pyrus_communis pycom01g13570 pycom07g16920
rosa_chinensis RchiOBHm_Chr1g0363421
rosa_laevigata RLG00000027569
rosa_multiflora Rmu_sc0000339.1_g000010 Rmu_sc0004458.1_g000006
rosa_rugosa Rorug01G0306600
rosa_samantha Rh1AG315700 Rh1CG295400 Rh1DG310100
rosa_wichuraiana Rw1G027960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 555
AasI GACNNNNNNGTC 1 cut(s) 305
AatII GACGTC 1 cut(s) 906
Acc36I ACCTGC 1 cut(s) 555
Acc65I GGTACC 1 cut(s) 754
AccB1I GGYRCC 3 cut(s) 494, 754, 873
AccI GTMKAC 2 cut(s) 339, 906
AclWI GGATC 4 cut(s) 515, 565, 850, 863
AcoI YGGCCR 2 cut(s) 180, 533
AcuI CTGAAG 1 cut(s) 713
AcyI GRCGYC 3 cut(s) 60, 495, 903
AdeI CACNNNGTG 1 cut(s) 138
AfaI GTAC 3 cut(s) 101, 756, 943
AfiI CCNNNNNNNGG 6 cut(s) 16, 141, 170, 504, 562, 599
AgsI TTSAA 1 cut(s) 625
AjiI CACGTC 1 cut(s) 579
AjnI CCWGG 3 cut(s) 177, 279, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AloI GAACNNNNNNTCC 2 cut(s) 605, 637
AluBI AGCT 8 cut(s) 127, 213, 226, 706, 727, 817, 880, 950
AluI AGCT 8 cut(s) 127, 213, 226, 706, 727, 817, 880, 950
Alw21I GWGCWC 2 cut(s) 546, 819
Alw26I GTCTC 2 cut(s) 88, 200
AlwI GGATC 4 cut(s) 515, 565, 850, 863
Ama87I CYCGRG 1 cut(s) 661
AoxI GGCC 7 cut(s) 118, 180, 283, 301, 478, 533, 680
ApeKI GCWGC 4 cut(s) 607, 706, 760, 995
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AsiSI GCGATCGC 1 cut(s) 435
Asp718I GGTACC 1 cut(s) 754
AspS9I GGNCC 3 cut(s) 144, 283, 613
AsuHPI GGTGA 6 cut(s) 97, 124, 190, 220, 580, 899
AvaI CYCGRG 1 cut(s) 661
AvaII GGWCC 2 cut(s) 144, 613
BalI TGGCCA 1 cut(s) 182
BamHI GGATCC 1 cut(s) 855
BanI GGYRCC 3 cut(s) 494, 754, 873
BanII GRGCYC 2 cut(s) 662, 819
BauI CACGAG 1 cut(s) 860
Bbv12I GWGCWC 2 cut(s) 546, 819
BbvCI CCTCAGC 2 cut(s) 710, 851
BbvI GCAGC 4 cut(s) 594, 693, 747, 982
BccI CCATC 2 cut(s) 191, 278
BciT130I CCWGG 3 cut(s) 179, 281, 896
BcoDI GTCTC 2 cut(s) 88, 200
BfaI CTAG 1 cut(s) 1000
BfoI RGCGCY 5 cut(s) 498, 516, 653, 701, 996
BfuAI ACCTGC 1 cut(s) 555
BglI GCCNNNNNGGC 2 cut(s) 42, 532
Bme1390I CCNGG 3 cut(s) 179, 281, 896
Bme18I GGWCC 2 cut(s) 144, 613
BmeT110I CYCGRG 1 cut(s) 661
BmgBI CACGTC 1 cut(s) 579
BmgT120I GGNCC 3 cut(s) 144, 283, 613
BmiI GGNNCC 7 cut(s) 146, 175, 496, 591, 756, 857, 875
BmrFI CCNGG 3 cut(s) 179, 281, 896
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 130
Bpu10I CCTNAGC 2 cut(s) 710, 851
BpuEI CTTGAG 3 cut(s) 107, 560, 722
BsaHI GRCGYC 3 cut(s) 60, 495, 903
BsaI GGTCTC 1 cut(s) 200
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 335, 365
Bsc4I CCNNNNNNNGG 6 cut(s) 16, 141, 170, 504, 562, 599
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 3 cut(s) 179, 281, 896
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 6 cut(s) 16, 141, 170, 504, 562, 599
BseMII CTCAG 2 cut(s) 701, 842
BseNI ACTGG 1 cut(s) 136
BsePI GCGCGC 1 cut(s) 826
BseRI GAGGAG 3 cut(s) 679, 758, 827
BseXI GCAGC 4 cut(s) 594, 693, 747, 982
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 7 cut(s) 120, 182, 285, 303, 480, 535, 682
BshNI GGYRCC 3 cut(s) 494, 754, 873
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 2 cut(s) 546, 819
BsiHKCI CYCGRG 1 cut(s) 661
BsiSI CCGG 3 cut(s) 201, 252, 611
BsiWI CGTACG 1 cut(s) 941
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 6 cut(s) 16, 141, 170, 504, 562, 599
BsmAI GTCTC 2 cut(s) 88, 200
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 7 cut(s) 120, 182, 285, 303, 480, 535, 682
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 661
Bsp1286I GDGCHC 3 cut(s) 546, 662, 819
Bsp143I GATC 6 cut(s) 432, 507, 519, 570, 765, 855
Bsp68I TCGCGA 1 cut(s) 983
BspANI GGCC 7 cut(s) 120, 182, 285, 303, 480, 535, 682
BspCNI CTCAG 2 cut(s) 702, 843
BspLI GGNNCC 7 cut(s) 146, 175, 496, 591, 756, 857, 875
BspMI ACCTGC 1 cut(s) 555
BspPI GGATC 4 cut(s) 515, 565, 850, 863
BspQI GCTCTTC 2 cut(s) 134, 557
BspT107I GGYRCC 3 cut(s) 494, 754, 873
BspTNI GGTCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 200
BssHII GCGCGC 1 cut(s) 826
BssMI GATC 6 cut(s) 432, 507, 519, 570, 765, 855
BssNI GRCGYC 3 cut(s) 60, 495, 903
BssSI CACGAG 1 cut(s) 860
Bst2BI CACGAG 1 cut(s) 860
Bst2UI CCWGG 3 cut(s) 179, 281, 896
Bst4CI ACNGT 2 cut(s) 673, 989
Bst6I CTCTTC 2 cut(s) 134, 557
BstACI GRCGYC 3 cut(s) 60, 495, 903
BstC8I GCNNGC 8 cut(s) 376, 648, 654, 658, 687, 805, 828, 948
BstDEI CTNAG 2 cut(s) 710, 851
BstDSI CCRYGG 6 cut(s) 190, 286, 530, 683, 772, 820
BstF5I GGATG 1 cut(s) 483
BstH2I RGCGCY 5 cut(s) 498, 516, 653, 701, 996
BstKTI GATC 6 cut(s) 435, 510, 522, 573, 768, 858
BstMAI GTCTC 2 cut(s) 88, 200
BstMBI GATC 6 cut(s) 432, 507, 519, 570, 765, 855
BstMCI CGRYCG 1 cut(s) 435
BstNI CCWGG 3 cut(s) 179, 281, 896
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 3 cut(s) 177, 279, 894
BstV1I GCAGC 4 cut(s) 594, 693, 747, 982
BstX2I RGATCY 1 cut(s) 855
BstXI CCANNNNNNTGG 1 cut(s) 884
BstYI RGATCY 1 cut(s) 855
BsuRI GGCC 7 cut(s) 120, 182, 285, 303, 480, 535, 682
BtgI CCRYGG 6 cut(s) 190, 286, 530, 683, 772, 820
BtrI CACGTC 1 cut(s) 579
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 143
BtuMI TCGCGA 1 cut(s) 983
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 8 cut(s) 376, 648, 654, 658, 687, 805, 828, 948
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 144, 283, 613
Cfr42I CCGCGG 1 cut(s) 686
CseI GACGC 4 cut(s) 68, 796, 819, 856
Csp6I GTAC 3 cut(s) 100, 755, 942
CviAII CATG 2 cut(s) 499, 868
CviQI GTAC 3 cut(s) 100, 755, 942
DdeI CTNAG 2 cut(s) 710, 851
DinI GGCGCC 1 cut(s) 496
DpnI GATC 6 cut(s) 434, 509, 521, 572, 767, 857
DpnII GATC 6 cut(s) 432, 507, 519, 570, 765, 855
DraIII CACNNNGTG 1 cut(s) 138
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 2 cut(s) 180, 533
Eam1104I CTCTTC 2 cut(s) 134, 557
EarI CTCTTC 2 cut(s) 134, 557
EciI GGCGGA 1 cut(s) 952
Ecl136II GAGCTC 1 cut(s) 817
Eco147I AGGCCT 1 cut(s) 120
Eco24I GRGCYC 2 cut(s) 662, 819
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 144, 613
Eco53kI GAGCTC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 713
Eco88I CYCGRG 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 817
EcoRII CCWGG 3 cut(s) 177, 279, 894
EcoT38I GRGCYC 2 cut(s) 662, 819
EgeI GGCGCC 1 cut(s) 496
EheI GGCGCC 1 cut(s) 496
FaeI CATG 2 cut(s) 502, 871
FaiI YATR 3 cut(s) 500, 793, 869
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 1 cut(s) 403
FatI CATG 2 cut(s) 498, 867
FauI CCCGC 7 cut(s) 80, 383, 406, 497, 591, 678, 808
FblI GTMKAC 2 cut(s) 339, 906
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 2 cut(s) 662, 819
FspBI CTAG 1 cut(s) 1000
HaeII RGCGCY 5 cut(s) 498, 516, 653, 701, 996
HaeIII GGCC 7 cut(s) 120, 182, 285, 303, 480, 535, 682
HapII CCGG 3 cut(s) 201, 252, 611
HgaI GACGC 4 cut(s) 68, 796, 819, 856
Hin1I GRCGYC 3 cut(s) 60, 495, 903
Hin1II CATG 2 cut(s) 502, 871
HincII GTYRAC 2 cut(s) 340, 907
HindII GTYRAC 2 cut(s) 340, 907
HinfI GANTC 2 cut(s) 362, 416
HpaII CCGG 3 cut(s) 201, 252, 611
HphI GGTGA 6 cut(s) 97, 124, 190, 220, 580, 899
Hpy166II GTNNAC 6 cut(s) 144, 190, 238, 340, 772, 907
Hpy188I TCNGA 4 cut(s) 97, 173, 298, 455
Hpy188III TCNNGA 3 cut(s) 320, 574, 982
Hpy8I GTNNAC 6 cut(s) 144, 190, 238, 340, 772, 907
HpyAV CCTTC 5 cut(s) 49, 73, 364, 376, 412
HpyCH4III ACNGT 2 cut(s) 673, 989
HpyCH4IV ACGT 2 cut(s) 578, 903
HpyCH4V TGCA 2 cut(s) 348, 720
HpyF3I CTNAG 2 cut(s) 710, 851
HpySE526I ACGT 2 cut(s) 578, 903
Hsp92I GRCGYC 3 cut(s) 60, 495, 903
Hsp92II CATG 2 cut(s) 502, 871
KasI GGCGCC 1 cut(s) 494
KpnI GGTACC 1 cut(s) 758
KspI CCGCGG 1 cut(s) 686
Kzo9I GATC 6 cut(s) 432, 507, 519, 570, 765, 855
LguI GCTCTTC 2 cut(s) 134, 557
LmnI GCTCC 4 cut(s) 456, 724, 814, 822
Lsp1109I GCAGC 4 cut(s) 594, 693, 747, 982
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 1000
MaeII ACGT 2 cut(s) 578, 903
MalI GATC 6 cut(s) 434, 509, 521, 572, 767, 857
MboI GATC 6 cut(s) 432, 507, 519, 570, 765, 855
MboII GAAGA 3 cut(s) 121, 349, 544
MfeI CAATTG 1 cut(s) 12
MflI RGATCY 1 cut(s) 855
MhlI GDGCHC 3 cut(s) 546, 662, 819
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 1 cut(s) 12
MluNI TGGCCA 1 cut(s) 182
Mly113I GGCGCC 1 cut(s) 495
MlyI GAGTC 2 cut(s) 356, 425
MmeI TCCRAC 2 cut(s) 321, 478
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 4 cut(s) 213, 685, 760, 880
MspI CCGG 3 cut(s) 201, 252, 611
MspR9I CCNGG 3 cut(s) 179, 281, 896
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 3 cut(s) 179, 281, 896
NarI GGCGCC 1 cut(s) 495
NdeII GATC 6 cut(s) 432, 507, 519, 570, 765, 855
NlaIII CATG 2 cut(s) 502, 871
NlaIV GGNNCC 7 cut(s) 146, 175, 496, 591, 756, 857, 875
NmeAIII GCCGAG 2 cut(s) 402, 439
NruI TCGCGA 1 cut(s) 983
NspI RCATGY 1 cut(s) 871
PaqCI CACCTGC 1 cut(s) 555
PauI GCGCGC 1 cut(s) 826
PceI AGGCCT 1 cut(s) 120
PciSI GCTCTTC 2 cut(s) 134, 557
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 780
Pfl23II CGTACG 1 cut(s) 941
Ple19I CGATCG 1 cut(s) 435
PleI GAGTC 2 cut(s) 356, 424
PluTI GGCGCC 1 cut(s) 498
PpsI GAGTC 2 cut(s) 356, 424
Psp124BI GAGCTC 1 cut(s) 819
Psp6I CCWGG 3 cut(s) 177, 279, 894
PspGI CCWGG 3 cut(s) 177, 279, 894
PspLI CGTACG 1 cut(s) 941
PspN4I GGNNCC 7 cut(s) 146, 175, 496, 591, 756, 857, 875
PspPI GGNCC 3 cut(s) 144, 283, 613
PsuI RGATCY 1 cut(s) 855
PteI GCGCGC 1 cut(s) 826
PvuI CGATCG 1 cut(s) 435
PvuII CAGCTG 2 cut(s) 213, 880
RgaI GCGATCGC 1 cut(s) 435
RruI TCGCGA 1 cut(s) 983
RsaI GTAC 3 cut(s) 101, 756, 943
RsaNI GTAC 3 cut(s) 100, 755, 942
SacI GAGCTC 1 cut(s) 819
SacII CCGCGG 1 cut(s) 686
SalI GTCGAC 2 cut(s) 338, 905
SapI GCTCTTC 2 cut(s) 134, 557
Sau3AI GATC 6 cut(s) 432, 507, 519, 570, 765, 855
Sau96I GGNCC 3 cut(s) 144, 283, 613
SchI GAGTC 2 cut(s) 356, 425
ScrFI CCNGG 3 cut(s) 179, 281, 896
SduI GDGCHC 3 cut(s) 546, 662, 819
SfaAI GCGATCGC 1 cut(s) 435
SfaNI GCATC 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 496
Sfr303I CCGCGG 1 cut(s) 686
SgfI GCGATCGC 1 cut(s) 435
SgrAI CRCCGGYG 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 686
SgrDI CGTCGACG 1 cut(s) 338
SinI GGWCC 2 cut(s) 144, 613
SmlI CTYRAG 3 cut(s) 122, 539, 701
SmoI CTYRAG 3 cut(s) 122, 539, 701
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 120
SspDI GGCGCC 1 cut(s) 494
SspMI CTAG 1 cut(s) 1000
SstI GAGCTC 1 cut(s) 819
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 177, 279, 894
TaaI ACNGT 2 cut(s) 673, 989
TaiI ACGT 2 cut(s) 581, 906
TaqI TCGA 7 cut(s) 273, 339, 360, 741, 810, 833, 906
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 99
TscAI CASTG 1 cut(s) 143
TseI GCWGC 4 cut(s) 607, 706, 760, 995
TspDTI ATGAA 1 cut(s) 394
TspRI CASTG 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 144, 613
XceI RCATGY 1 cut(s) 871
XmiI GTMKAC 2 cut(s) 339, 906
XspI CTAG 1 cut(s) 1000
ZraI GACGTC 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.