Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010699

Physical Location & Seq

Genomic Coordinates Reverse (-)

4871531 .. 4873683

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGAAGAAATTGAAAAGCTATTACATGCAAGTTCGTAACCAGCAACAATCTCTTGACCGAAAATGGATTCTTCCATTAGCAATCGGATCCATTTGTTCTCTCTTTCTCTTGTTGCTAACGAACTTAGCTTCTTCTTCTGGTCAAACTCGTTTGATTCCATTTTCAGTTTACGGATTTAGATCCTCCGTCTTCGTCGAATCCAAGATAAATCCAGTATCCGTCTCACTCACCGTCTCCGTCTCTCCTCCTCCGCCGCCACGTCTCGCTTATCTAATCTCCGGCTCCTCTGGTGACGGTCAGATGCTGAAACGAACTCTAATGGCGCTTTATCATCCCAACAACCAGTACGTTGTTCATCTCGATCGGGAATCTTCACCGGAGGAACGATTGGATCTCAGTGGTTTTGTGGCGAATCATACTCTGTTTCAGAGATTTCAAAATGTTCGGATGATTGTTAAGGCTAATTTCGTTACGTATCGTGGTCCAACTATGGTGGCTAATACACTTCACGCTGCAGCGATTTTGCTTCGTGAAGGTGGTGATTGGGATTGGTTCATCAATCTCAGTGCCTCTGATTATCCTCTCGTAACACAAGATGATCTGTTGCATACGTTTTCGTATCTTCCTCGAGATCTCAATTTCATCGATCATACAAGCAACATTGGCTGGAAAGAGTCTCATAGAGCAAAGCCTATAATTATTGATCCTGGTTTGTATATGTCAAAGAAAGCTGATGTTTTCTGGGTTTCACAGAAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAGGATCTGCGTGGATGATGTTATCTAGACCTTTTGTGGATTATTTCATATGGGGATGGGATAATCTTCCTCGAATTGTGTTAATGTATTACGCAAACTTCCTTTCATCGCCAGAAGGTTACTTCCACACTGTGATTTGCAATGCTCGAGAGTTTACCAACACAACGGTTAACAGTGACTTACATTTCATCTCATGGGACAATCCTCCAAAGCAACATCCTCACCATCTTACATTAGATGATTTCCAGAGAATGGTGGACAGTAACGCTCCTTTTGCTAGGAAATTCCGTAGAGATGAGCCTGTTCTCGATAAGATTGATTCGGAACTATTGTTTCGGAGTCACGGGATGGTCACTCCGGGTGGTTGGTGTATTGGTACGAGGGAAAACGGGAGCGATCCGTGTGCGGTGATTGGTGATACGTCGGTTATTAAACCTGGTCTTGGAGCTAAACGGATCGAGAAACTCATAACTTATTTGTTATCTACTGAGAATTTCAGACCACGGCAATGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009826 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0015020 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032989 GO:0034097 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0060560 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

434

Amino Acids

49.58

Weight (kDa)

9.22

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	88 - 347	4.5e-82	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15050 AT5G39990
fragaria_vesca	FvH4_6g49530
malus_domestica	MD09G1044100.v1.1 MD17G1046000.v1.1
prunus_persica	Prupe.3G273700_v2.0.a1
pyrus_communis	pycom111g03430 pycom111g03440 pycom17g04110
rosa_chinensis	RchiOBHm_Chr2g0169441
rosa_laevigata	RLG00000021864
rosa_multiflora	Rmu_sc0004665.1_g000013 Rmu_sc0006806.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082120
rosa_rugosa	Rorug02G0540000
rosa_samantha	Rh2AG611400 Rh2BG625100 Rh2CG593400 Rh2DG635700
rosa_wichuraiana	Rw2G050740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1039
AciI	CCGC	3 cut(s)	251, 254, 1193
AclWI	GGATC	8 cut(s)	81, 94, 174, 399, 698, 799, 1178, 1250
AcsI	RAATTY	2 cut(s)	1070, 1279
AdeI	CACNNNGTG	1 cut(s)	919
AfaI	GTAC	2 cut(s)	347, 1165
AfiI	CCNNNNNNNGG	2 cut(s)	1039, 1229
AgsI	TTSAA	3 cut(s)	13, 437, 778
AjiI	CACGTC	1 cut(s)	260
AjnI	CCWGG	2 cut(s)	706, 1222
AluBI	AGCT	5 cut(s)	18, 128, 731, 773, 1235
AluI	AGCT	5 cut(s)	18, 128, 731, 773, 1235
Alw26I	GTCTC	5 cut(s)	226, 238, 244, 266, 681
AlwI	GGATC	8 cut(s)	81, 94, 174, 399, 698, 799, 1178, 1250
AlwNI	CAGNNNCTG	2 cut(s)	304, 794
Ama87I	CYCGRG	2 cut(s)	627, 933
ApeKI	GCWGC	2 cut(s)	512, 515
ApoI	RAATTY	2 cut(s)	1070, 1279
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	482
AsuC2I	CCSGG	1 cut(s)	1146
AsuHPI	GGTGA	7 cut(s)	220, 302, 366, 551, 1001, 1207, 1214
AvaI	CYCGRG	2 cut(s)	627, 933
AvaII	GGWCC	1 cut(s)	482
BaeI	ACNNNNGTAYC	2 cut(s)	1197, 1230
BamHI	GGATCC	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	751, 783
BbsI	GAAGAC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	499, 527
BccI	CCATC	3 cut(s)	837, 1020, 1129
BcgI	CGANNNNNNTGC	2 cut(s)	1172, 1206
BciT130I	CCWGG	2 cut(s)	708, 1224
BciVI	GTATCC	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	1146
BcoDI	GTCTC	5 cut(s)	226, 238, 244, 266, 681
BfaI	CTAG	2 cut(s)	813, 1065
BfmI	CTRYAG	2 cut(s)	513, 768
BfoI	RGCGCY	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	3 cut(s)	254, 513, 516
BlsI	GCNGC	3 cut(s)	255, 514, 517
Bme1390I	CCNGG	3 cut(s)	708, 1146, 1224
Bme18I	GGWCC	1 cut(s)	482
BmeT110I	CYCGRG	2 cut(s)	627, 933
BmgBI	CACGTC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	88, 283
BmrFI	CCNGG	3 cut(s)	708, 1146, 1224
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	1146
Bsa29I	ATCGAT	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	1289
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	1039, 1229
Bse118I	RCCGGY	1 cut(s)	1299
Bse1I	ACTGG	2 cut(s)	212, 343
Bse3DI	GCAATG	2 cut(s)	934, 1301
Bse8I	GATNNNNATC	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	708, 1224
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	1289
BseGI	GGATG	6 cut(s)	331, 453, 807, 848, 1003, 1140
BseJI	GATNNNNATC	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	1039, 1229
BseMI	GCAATG	2 cut(s)	934, 1301
BseMII	CTCAG	3 cut(s)	409, 577, 1266
BseNI	ACTGG	2 cut(s)	212, 343
BseRI	GAGGAG	3 cut(s)	234, 237, 274
BseXI	GCAGC	2 cut(s)	499, 527
Bsh1285I	CGRYCG	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	645
BsiEI	CGRYCG	1 cut(s)	364
BsiHKCI	CYCGRG	2 cut(s)	627, 933
BsiSI	CCGG	4 cut(s)	279, 377, 1145, 1300
BslFI	GGGAC	1 cut(s)	998
BslI	CCNNNNNNNGG	2 cut(s)	1039, 1229
BsmAI	GTCTC	5 cut(s)	226, 238, 244, 266, 681
BsmBI	CGTCTC	4 cut(s)	226, 238, 244, 266
BsmFI	GGGAC	1 cut(s)	998
BsoBI	CYCGRG	2 cut(s)	627, 933
BspACI	CCGC	3 cut(s)	251, 254, 1193
BspCNI	CTCAG	3 cut(s)	408, 576, 1267
BspDI	ATCGAT	1 cut(s)	645
BspLI	GGNNCC	2 cut(s)	88, 283
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	8 cut(s)	81, 94, 174, 399, 698, 799, 1178, 1250
BsrDI	GCAATG	2 cut(s)	934, 1301
BsrFI	RCCGGY	1 cut(s)	1299
BsrI	ACTGG	2 cut(s)	212, 343
BssAI	RCCGGY	1 cut(s)	1299
BssECI	CCNNGG	1 cut(s)	1289
Bst2UI	CCWGG	2 cut(s)	708, 1224
Bst4CI	ACNGT	6 cut(s)	232, 296, 919, 955, 962, 1049
Bst6I	CTCTTC	2 cut(s)	749, 788
BstBAI	YACGTR	1 cut(s)	474
BstDEI	CTNAG	4 cut(s)	124, 395, 563, 1275
BstDSI	CCRYGG	1 cut(s)	1289
BstF5I	GGATG	6 cut(s)	331, 453, 807, 848, 1003, 1140
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstMAI	GTCTC	5 cut(s)	226, 238, 244, 266, 681
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	2 cut(s)	663, 1061
BstNI	CCWGG	2 cut(s)	708, 1224
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	3 cut(s)	706, 1144, 1222
BstSFI	CTRYAG	2 cut(s)	513, 768
BstSNI	TACGTA	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	499, 527
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	5 cut(s)	86, 179, 391, 631, 791
BstYI	RGATCY	5 cut(s)	86, 179, 391, 631, 791
Bsu15I	ATCGAT	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	226
BsuTUI	ATCGAT	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	1289
BtgZI	GCGATG	1 cut(s)	879
BtrI	CACGTC	1 cut(s)	260
BtsCI	GGATG	6 cut(s)	331, 453, 807, 848, 1003, 1140
BtsIMutI	CAGTG	4 cut(s)	403, 571, 915, 967
CaiI	CAGNNNCTG	2 cut(s)	304, 794
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	1299
Cfr13I	GGNCC	1 cut(s)	482
ClaI	ATCGAT	1 cut(s)	645
CsiI	ACCWGGT	1 cut(s)	1222
Csp6I	GTAC	2 cut(s)	346, 1164
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	2 cut(s)	25, 981
CviQI	GTAC	2 cut(s)	346, 1164
DdeI	CTNAG	4 cut(s)	124, 395, 563, 1275
DraIII	CACNNNGTG	1 cut(s)	919
Eam1104I	CTCTTC	2 cut(s)	749, 788
EarI	CTCTTC	2 cut(s)	749, 788
EciI	GGCGGA	1 cut(s)	240
Eco105I	TACGTA	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	482
Eco88I	CYCGRG	2 cut(s)	627, 933
EcoRII	CCWGG	2 cut(s)	706, 1222
Esp3I	CGTCTC	4 cut(s)	226, 238, 244, 266
FaeI	CATG	2 cut(s)	28, 984
FaqI	GGGAC	1 cut(s)	998
FatI	CATG	2 cut(s)	24, 980
FauNDI	CATATG	1 cut(s)	836
Fnu4HI	GCNGC	3 cut(s)	254, 513, 516
FokI	GGATG	6 cut(s)	318, 460, 814, 855, 990, 1147
Fsp4HI	GCNGC	3 cut(s)	254, 513, 516
FspBI	CTAG	2 cut(s)	813, 1065
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	3 cut(s)	254, 513, 516
HaeII	RGCGCY	1 cut(s)	326
HapII	CCGG	4 cut(s)	279, 377, 1145, 1300
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	28, 984
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HincII	GTYRAC	1 cut(s)	958
HindII	GTYRAC	1 cut(s)	958
HinfI	GANTC	8 cut(s)	67, 154, 197, 368, 412, 674, 1106, 1126
HpaI	GTTAAC	1 cut(s)	958
HpaII	CCGG	4 cut(s)	279, 377, 1145, 1300
HphI	GGTGA	7 cut(s)	220, 302, 366, 551, 1001, 1207, 1214
Hpy166II	GTNNAC	4 cut(s)	169, 942, 958, 1045
Hpy188I	TCNGA	8 cut(s)	86, 300, 429, 447, 574, 1111, 1125, 1286
Hpy8I	GTNNAC	4 cut(s)	169, 942, 958, 1045
Hpy99I	CGWCG	2 cut(s)	197, 1213
HpyAV	CCTTC	2 cut(s)	527, 896
HpyCH4III	ACNGT	6 cut(s)	232, 296, 919, 955, 962, 1049
HpyCH4IV	ACGT	5 cut(s)	259, 348, 473, 611, 1208
HpyCH4V	TGCA	4 cut(s)	28, 515, 607, 927
HpyF10VI	GCNNNNNNNGC	2 cut(s)	663, 1061
HpyF3I	CTNAG	4 cut(s)	124, 395, 563, 1275
HpySE526I	ACGT	5 cut(s)	259, 348, 473, 611, 1208
Hsp92II	CATG	2 cut(s)	28, 984
HspAI	GCGC	1 cut(s)	323
KspAI	GTTAAC	1 cut(s)	958
LmnI	GCTCC	4 cut(s)	287, 1060, 1179, 1232
Lsp1109I	GCAGC	2 cut(s)	499, 527
LweI	GCATC	1 cut(s)	291
MabI	ACCWGGT	1 cut(s)	1222
MaeI	CTAG	2 cut(s)	813, 1065
MaeII	ACGT	5 cut(s)	259, 348, 473, 611, 1208
MaeIII	GTNAC	9 cut(s)	35, 290, 469, 586, 905, 962, 1049, 1127, 1138
MflI	RGATCY	5 cut(s)	86, 179, 391, 631, 791
MluCI	AATT	7 cut(s)	8, 463, 637, 696, 861, 1070, 1279
MlyI	GAGTC	2 cut(s)	683, 1135
MmeI	TCCRAC	1 cut(s)	509
MseI	TTAA	4 cut(s)	456, 869, 957, 1218
MslI	CAYNNNNRTG	1 cut(s)	1294
MspI	CCGG	4 cut(s)	279, 377, 1145, 1300
MspR9I	CCNGG	3 cut(s)	708, 1146, 1224
MvaI	CCWGG	2 cut(s)	708, 1224
MwoI	GCNNNNNNNGC	2 cut(s)	663, 1061
NciI	CCSGG	1 cut(s)	1146
NdeI	CATATG	1 cut(s)	836
NlaIII	CATG	2 cut(s)	28, 984
NlaIV	GGNNCC	2 cut(s)	88, 283
NmuCI	GTSAC	4 cut(s)	290, 962, 1127, 1138
NspI	RCATGY	1 cut(s)	28
PaeR7I	CTCGAG	2 cut(s)	627, 933
PfeI	GAWTC	6 cut(s)	67, 154, 197, 368, 412, 1106
PflMI	CCANNNNNTGG	1 cut(s)	1039
PkrI	GCNGC	3 cut(s)	255, 514, 517
Ple19I	CGATCG	1 cut(s)	364
PleI	GAGTC	2 cut(s)	682, 1134
PpsI	GAGTC	2 cut(s)	682, 1134
Ppu21I	YACGTR	1 cut(s)	474
Psp6I	CCWGG	2 cut(s)	706, 1222
PspGI	CCWGG	2 cut(s)	706, 1222
PspN4I	GGNNCC	2 cut(s)	88, 283
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	517
PstNI	CAGNNNCTG	2 cut(s)	304, 794
PsuI	RGATCY	5 cut(s)	86, 179, 391, 631, 791
PvuI	CGATCG	1 cut(s)	364
RsaI	GTAC	2 cut(s)	347, 1165
RsaNI	GTAC	2 cut(s)	346, 1164
RseI	CAYNNNNRTG	1 cut(s)	1294
SaqAI	TTAA	4 cut(s)	456, 869, 957, 1218
SatI	GCNGC	3 cut(s)	254, 513, 516
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	2 cut(s)	683, 1135
ScrFI	CCNGG	3 cut(s)	708, 1146, 1224
SexAI	ACCWGGT	1 cut(s)	1222
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	2 cut(s)	513, 768
Sfr274I	CTCGAG	2 cut(s)	627, 933
SinI	GGWCC	1 cut(s)	482
SlaI	CTCGAG	2 cut(s)	627, 933
SmiMI	CAYNNNNRTG	1 cut(s)	1294
SmlI	CTYRAG	2 cut(s)	627, 933
SmoI	CTYRAG	2 cut(s)	627, 933
SnaBI	TACGTA	1 cut(s)	474
Sse9I	AATT	7 cut(s)	8, 463, 637, 696, 861, 1070, 1279
SsiI	CCGC	3 cut(s)	251, 254, 1193
SspMI	CTAG	2 cut(s)	813, 1065
StyD4I	CCNGG	3 cut(s)	706, 1144, 1222
TaaI	ACNGT	6 cut(s)	232, 296, 919, 955, 962, 1049
TaiI	ACGT	5 cut(s)	262, 351, 476, 614, 1211
TaqI	TCGA	8 cut(s)	195, 360, 628, 645, 859, 934, 1095, 1245
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	7 cut(s)	8, 463, 637, 696, 861, 1070, 1279
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	6 cut(s)	67, 154, 197, 368, 412, 1106
Tru1I	TTAA	4 cut(s)	456, 869, 957, 1218
Tru9I	TTAA	4 cut(s)	456, 869, 957, 1218
TscAI	CASTG	4 cut(s)	403, 571, 922, 967
TseFI	GTSAC	4 cut(s)	290, 962, 1127, 1138
TseI	GCWGC	2 cut(s)	512, 515
Tsp45I	GTSAC	4 cut(s)	290, 962, 1127, 1138
TspDTI	ATGAA	7 cut(s)	17, 344, 544, 631, 823, 882, 964
TspGWI	ACGGA	7 cut(s)	175, 186, 208, 226, 1064, 1176, 1255
TspRI	CASTG	4 cut(s)	403, 571, 922, 967
Van91I	CCANNNNNTGG	1 cut(s)	1039
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	2 cut(s)	1070, 1279
XbaI	TCTAGA	1 cut(s)	812
XceI	RCATGY	1 cut(s)	28
XhoI	CTCGAG	2 cut(s)	627, 933
XspI	CTAG	2 cut(s)	813, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.