MD17G1046000.v1.1

Xylosyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
3371586 .. 3375345
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1046000.v1.1.491

Sequence Viewer

Length: 1287 bp
ATGAAGAAGCTCAAGAGCTACTACTCGCATCTGAGGCACCACCAAACAGTGGAGCTGAAATGGATCTTCCCCTTGGCGATTGGCTCCATTGTCTCTCTCTTCCTCCTCTTCCTCACCACCCTGACGTCATCCGACGGCACGCCGCTGCTCCCCTTCTACCGCTCCTTCTCCATCTCCAGCTCTGTCTTCATCGAATCCAAGCTCCACCCGCTTCCCGTCTCCTCCCTCCCGCCGCCGCCGCGCTTTGCGTACTTCATCTCCGGCTCTAACGGCGACGGAAACATGCTGAAGCGGACCCTCCAGGCGCTTTACCACCCGCACAACTACTACGTGGTCCACCTGGACCTCGAGTCGCCGCCCGATGAGCGGATGGATCTGCAGAATTACGTTTCTACCCACCCCGTTTTTGTCCAGTTTGGGAATGTGAAGATGATCAGCAAGGCTAATCTCGTCACTTACAGGGGACCGACTATGGTGGCCAACACCCTCCACGCCGCCGCCATTTTGCTGAGGGAAGGCGGCGATTGGGATTGGTTCATCAACCTCAGCGCTTCCGATTACCCACTTATTACTCAGGATGATCTGCTGCATACGTTTTCTTACTTGCCGCGGGATCTTAACTTCATCGACCATACAAGCAACATTGGGTGGAAGGAGTATCAAAGAGCGAAACCGATAATTGTAGATCCGGGGTTGTATATGACCAAGAAAGCCGATGTCTTTTGGGTTACACAGCGAAGGAGTGTGCCAACAGCTTTCAAACTTTTTACAGGTTCTGCTTGGATGGCACTTTCAAAGCCCTTTGTTGATTACTGCATATGGGGATGGGACAACCTACCACGAACTGTTCTCATGTACTATGCAAATTTTTTATCATCCCCGGAGGGATACTTTCACACTGTCATATGTAACGCTCAAGAGTTCCGCAACACAACTGTGAATAGTGACCTACATTTTATAACGTGGGATAACCCTCCCAAGCAACATCCTCACCACCTTAACCTTGCAGATATGCAAAGGATGGTCGACAGCAATGCTCCCTTTGCAAGAAAGTTTCGCCAAGATGATGCTGTGCTTGACAAAATTGATTCTGAGCTGTTGTCTAAGGGTCCCGGTATGCTTGTTCCTGGTGGTTGGTGCATAGGAAAAAGGGACAATGGGTCTGATCCATGCTCTGATATTGGCAATACCACAGTCCTCATGCCTACCCCTGGAGCAAAAAGGCTCGAAGTTTTGATCAGCTCTCTATTATCCAACGAGAAATTCCGATCAAACCAGTGCAAATGA

Protein Analysis

429

Amino Acids

48.71

Weight (kDa)

8.43

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 82 - 341 4.4e-79 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010699)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
AatII GACGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 36
AccB7I CCANNNNNTGG 1 cut(s) 49
AccBSI CCGCTC 2 cut(s) 162, 367
AccI GTMKAC 1 cut(s) 1026
AccII CGCG 2 cut(s) 241, 610
AclWI GGATC 5 cut(s) 71, 381, 621, 680, 1160
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 2 cut(s) 865, 1262
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 2 cut(s) 251, 857
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 49, 366, 1211
AgsI TTSAA 2 cut(s) 760, 795
AhdI GACNNNNNGTC 2 cut(s) 349, 1159
AjnI CCWGG 4 cut(s) 300, 339, 1126, 1210
AjuI GAANNNNNNNTTGG 2 cut(s) 1247, 1279
AleI CACNNNNGTG 1 cut(s) 935
AluBI AGCT 8 cut(s) 10, 18, 55, 180, 202, 755, 1096, 1242
AluI AGCT 8 cut(s) 10, 18, 55, 180, 202, 755, 1096, 1242
Alw26I GTCTC 2 cut(s) 97, 223
AlwI GGATC 5 cut(s) 71, 381, 621, 680, 1160
AlwNI CAGNNNCTG 1 cut(s) 776
Ama87I CYCGRG 1 cut(s) 347
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 1 cut(s) 477
ApeKI GCWGC 2 cut(s) 145, 586
ApoI RAATTY 2 cut(s) 865, 1262
AspLEI GCGC 3 cut(s) 243, 307, 551
AspS9I GGNCC 5 cut(s) 294, 334, 343, 464, 1109
AsuC2I CCSGG 3 cut(s) 690, 881, 1113
AsuHPI GGTGA 2 cut(s) 106, 983
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 5 cut(s) 294, 334, 343, 464, 1109
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 178
BbvCI CCTCAGC 2 cut(s) 509, 545
BbvI GCAGC 2 cut(s) 132, 573
BccI CCATC 5 cut(s) 179, 364, 778, 819, 1015
BceAI ACGGC 2 cut(s) 151, 286
BcgI CGANNNNNNTGC 2 cut(s) 1016, 1050
BciT130I CCWGG 4 cut(s) 302, 341, 1128, 1212
BciVI GTATCC 1 cut(s) 881
BclI TGATCA 2 cut(s) 432, 1236
BcnI CCSGG 3 cut(s) 690, 881, 1113
BcoDI GTCTC 2 cut(s) 97, 223
BfmI CTRYAG 1 cut(s) 377
BfoI RGCGCY 2 cut(s) 308, 552
BfuI GTATCC 1 cut(s) 881
Bme1390I CCNGG 7 cut(s) 302, 341, 690, 881, 1113, 1128, 1212
Bme18I GGWCC 5 cut(s) 294, 334, 343, 464, 1109
BmeRI GACNNNNNGTC 2 cut(s) 349, 1159
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 5 cut(s) 294, 334, 343, 464, 1109
BmiI GGNNCC 6 cut(s) 38, 85, 296, 465, 1110, 1111
BmrFI CCNGG 7 cut(s) 302, 341, 690, 881, 1113, 1128, 1212
BmsI GCATC 2 cut(s) 37, 1057
BpiI GAAGAC 1 cut(s) 178
BpmI CTGGAG 3 cut(s) 160, 284, 1233
Bpu10I CCTNAGC 2 cut(s) 509, 545
BpuEI CTTGAG 1 cut(s) 900
BpuMI CCSGG 3 cut(s) 690, 881, 1113
BsaAI YACGTR 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 5 cut(s) 72, 608, 689, 879, 1210
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 366, 1211
Bse1I ACTGG 2 cut(s) 412, 1276
Bse3DI GCAATG 1 cut(s) 1039
BseBI CCWGG 4 cut(s) 302, 341, 1128, 1212
BseDI CCNNGG 5 cut(s) 72, 608, 689, 879, 1210
BseGI GGATG 8 cut(s) 128, 375, 583, 789, 830, 875, 985, 1026
BseLI CCNNNNNNNGG 3 cut(s) 49, 366, 1211
BseMI GCAATG 1 cut(s) 1039
BseMII CTCAG 5 cut(s) 23, 500, 559, 587, 1083
BseNI ACTGG 2 cut(s) 412, 1276
BseRI GAGGAG 2 cut(s) 95, 211
BseXI GCAGC 2 cut(s) 132, 573
Bsh1236I CGCG 2 cut(s) 241, 610
BshFI GGCC 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 4 cut(s) 261, 689, 881, 1113
BslFI GGGAC 4 cut(s) 477, 842, 1095, 1166
BslI CCNNNNNNNGG 3 cut(s) 49, 366, 1211
BsmAI GTCTC 2 cut(s) 97, 223
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 4 cut(s) 477, 842, 1095, 1166
BsnI GGCC 1 cut(s) 479
BsoBI CYCGRG 1 cut(s) 347
Bsp143I GATC 9 cut(s) 63, 373, 432, 580, 613, 685, 1165, 1236, 1268
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 5 cut(s) 24, 501, 558, 586, 1084
BspFNI CGCG 2 cut(s) 241, 610
BspLI GGNNCC 6 cut(s) 38, 85, 296, 465, 1110, 1111
BspMAI CTGCAG 1 cut(s) 381
BspPI GGATC 5 cut(s) 71, 381, 621, 680, 1160
BspT107I GGYRCC 1 cut(s) 36
BsrBI CCGCTC 2 cut(s) 162, 367
BsrDI GCAATG 1 cut(s) 1039
BsrI ACTGG 2 cut(s) 412, 1276
BssECI CCNNGG 5 cut(s) 72, 608, 689, 879, 1210
BssMI GATC 9 cut(s) 63, 373, 432, 580, 613, 685, 1165, 1236, 1268
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 4 cut(s) 302, 341, 1128, 1212
Bst4CI ACNGT 5 cut(s) 49, 847, 901, 937, 1195
Bst6I CTCTTC 2 cut(s) 104, 113
BstACI GRCGYC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 6 cut(s) 32, 509, 545, 573, 1092, 1104
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 8 cut(s) 128, 375, 583, 789, 830, 875, 985, 1026
BstFNI CGCG 2 cut(s) 241, 610
BstH2I RGCGCY 2 cut(s) 308, 552
BstHHI GCGC 3 cut(s) 243, 307, 551
BstKTI GATC 9 cut(s) 66, 376, 435, 583, 616, 688, 1168, 1239, 1271
BstMAI GTCTC 2 cut(s) 97, 223
BstMBI GATC 9 cut(s) 63, 373, 432, 580, 613, 685, 1165, 1236, 1268
BstMWI GCNNNNNNNGC 7 cut(s) 34, 208, 238, 270, 364, 785, 1043
BstNI CCWGG 4 cut(s) 302, 341, 1128, 1212
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 7 cut(s) 300, 339, 688, 879, 1111, 1126, 1210
BstSFI CTRYAG 1 cut(s) 377
BstUI CGCG 2 cut(s) 241, 610
BstV1I GCAGC 2 cut(s) 132, 573
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 4 cut(s) 63, 373, 613, 685
BstYI RGATCY 4 cut(s) 63, 373, 613, 685
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 1 cut(s) 479
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 8 cut(s) 128, 375, 583, 789, 830, 875, 985, 1026
BtsIMutI CAGTG 3 cut(s) 54, 897, 1283
Cac8I GCNNGC 1 cut(s) 140
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 3 cut(s) 243, 307, 551
Cfr13I GGNCC 5 cut(s) 294, 334, 343, 464, 1109
Cfr42I CCGCGG 1 cut(s) 611
Csp6I GTAC 2 cut(s) 250, 856
CviAII CATG 4 cut(s) 283, 853, 1170, 1201
CviQI GTAC 2 cut(s) 250, 856
DdeI CTNAG 6 cut(s) 32, 509, 545, 573, 1092, 1104
DpnI GATC 9 cut(s) 65, 375, 434, 582, 615, 687, 1167, 1238, 1270
DpnII GATC 9 cut(s) 63, 373, 432, 580, 613, 685, 1165, 1236, 1268
DriI GACNNNNNGTC 2 cut(s) 349, 1159
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 104, 113
Eam1105I GACNNNNNGTC 2 cut(s) 349, 1159
EarI CTCTTC 2 cut(s) 104, 113
Eco130I CCWWGG 1 cut(s) 72
Eco47I GGWCC 5 cut(s) 294, 334, 343, 464, 1109
Eco47III AGCGCT 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 1109
EcoRII CCWGG 4 cut(s) 300, 339, 1126, 1210
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 4 cut(s) 286, 856, 1173, 1204
FaqI GGGAC 4 cut(s) 477, 842, 1095, 1166
FatI CATG 4 cut(s) 282, 852, 1169, 1200
FauI CCCGC 4 cut(s) 216, 237, 324, 603
FauNDI CATATG 2 cut(s) 818, 905
FbaI TGATCA 2 cut(s) 432, 1236
FblI GTMKAC 1 cut(s) 1026
FokI GGATG 8 cut(s) 115, 382, 590, 796, 837, 862, 972, 1033
GlaI GCGC 3 cut(s) 242, 306, 550
GsuI CTGGAG 3 cut(s) 160, 284, 1233
HaeII RGCGCY 2 cut(s) 308, 552
HaeIII GGCC 1 cut(s) 479
HapII CCGG 4 cut(s) 261, 689, 881, 1113
HhaI GCGC 3 cut(s) 243, 307, 551
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 4 cut(s) 286, 856, 1173, 1204
Hin6I GCGC 3 cut(s) 241, 305, 549
HinP1I GCGC 3 cut(s) 241, 305, 549
HincII GTYRAC 1 cut(s) 1027
HindII GTYRAC 1 cut(s) 1027
HinfI GANTC 3 cut(s) 194, 350, 1088
HpaII CCGG 4 cut(s) 261, 689, 881, 1113
HphI GGTGA 2 cut(s) 106, 983
Hpy166II GTNNAC 2 cut(s) 337, 1027
Hpy188I TCNGA 7 cut(s) 33, 133, 556, 1093, 1165, 1177, 1268
Hpy188III TCNNGA 3 cut(s) 13, 575, 917
Hpy8I GTNNAC 2 cut(s) 337, 1027
Hpy99I CGWCG 2 cut(s) 137, 278
HpyAV CCTTC 5 cut(s) 163, 175, 509, 646, 732
HpyCH4III ACNGT 5 cut(s) 49, 847, 901, 937, 1195
HpyCH4IV ACGT 5 cut(s) 125, 330, 387, 593, 962
HpyCH4V TGCA 9 cut(s) 379, 589, 816, 863, 1007, 1015, 1046, 1140, 1281
HpyF10VI GCNNNNNNNGC 7 cut(s) 34, 208, 238, 270, 364, 785, 1043
HpyF3I CTNAG 6 cut(s) 32, 509, 545, 573, 1092, 1104
HpySE526I ACGT 5 cut(s) 125, 330, 387, 593, 962
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 4 cut(s) 286, 856, 1173, 1204
HspAI GCGC 3 cut(s) 241, 305, 549
KflI GGGWCCC 1 cut(s) 1109
Ksp22I TGATCA 2 cut(s) 432, 1236
KspI CCGCGG 1 cut(s) 611
Kzo9I GATC 9 cut(s) 63, 373, 432, 580, 613, 685, 1165, 1236, 1268
LmnI GCTCC 7 cut(s) 52, 89, 153, 167, 207, 1042, 1214
Lsp1109I GCAGC 2 cut(s) 132, 573
LweI GCATC 2 cut(s) 37, 1057
MaeII ACGT 5 cut(s) 125, 330, 387, 593, 962
MaeIII GTNAC 4 cut(s) 451, 727, 908, 944
MalI GATC 9 cut(s) 65, 375, 434, 582, 615, 687, 1167, 1238, 1270
MbiI CCGCTC 2 cut(s) 162, 367
MboI GATC 9 cut(s) 63, 373, 432, 580, 613, 685, 1165, 1236, 1268
MboII GAAGA 6 cut(s) 16, 58, 91, 100, 178, 439
MflI RGATCY 4 cut(s) 63, 373, 613, 685
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 5 cut(s) 382, 678, 865, 1083, 1262
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 156, 1278
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 618, 999
MslI CAYNNNNRTG 1 cut(s) 935
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 145, 610
MspI CCGG 4 cut(s) 261, 689, 881, 1113
MspR9I CCNGG 7 cut(s) 302, 341, 690, 881, 1113, 1128, 1212
MvaI CCWGG 4 cut(s) 302, 341, 1128, 1212
MvnI CGCG 2 cut(s) 241, 610
MwoI GCNNNNNNNGC 7 cut(s) 34, 208, 238, 270, 364, 785, 1043
NciI CCSGG 3 cut(s) 690, 881, 1113
NdeI CATATG 2 cut(s) 818, 905
NdeII GATC 9 cut(s) 63, 373, 432, 580, 613, 685, 1165, 1236, 1268
NlaIII CATG 4 cut(s) 286, 856, 1173, 1204
NlaIV GGNNCC 6 cut(s) 38, 85, 296, 465, 1110, 1111
NmuCI GTSAC 2 cut(s) 451, 944
NspI RCATGY 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 935
PaeR7I CTCGAG 1 cut(s) 347
PfeI GAWTC 2 cut(s) 194, 1088
PflMI CCANNNNNTGG 1 cut(s) 49
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Ppu21I YACGTR 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 1109
PsiI TTATAA 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 1109
Psp6I CCWGG 4 cut(s) 300, 339, 1126, 1210
PspGI CCWGG 4 cut(s) 300, 339, 1126, 1210
PspN4I GGNNCC 6 cut(s) 38, 85, 296, 465, 1110, 1111
PspPI GGNCC 5 cut(s) 294, 334, 343, 464, 1109
PspPPI RGGWCCY 1 cut(s) 1109
PspXI VCTCGAGB 1 cut(s) 347
PstI CTGCAG 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 4 cut(s) 63, 373, 613, 685
RsaI GTAC 2 cut(s) 251, 857
RsaNI GTAC 2 cut(s) 250, 856
RseI CAYNNNNRTG 1 cut(s) 935
SacII CCGCGG 1 cut(s) 611
SalI GTCGAC 1 cut(s) 1025
SaqAI TTAA 2 cut(s) 618, 999
Sau3AI GATC 9 cut(s) 63, 373, 432, 580, 613, 685, 1165, 1236, 1268
Sau96I GGNCC 5 cut(s) 294, 334, 343, 464, 1109
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 7 cut(s) 302, 341, 690, 881, 1113, 1128, 1212
SfaNI GCATC 2 cut(s) 37, 1057
SfcI CTRYAG 1 cut(s) 377
Sfr274I CTCGAG 1 cut(s) 347
Sfr303I CCGCGG 1 cut(s) 611
SgrBI CCGCGG 1 cut(s) 611
SinI GGWCC 5 cut(s) 294, 334, 343, 464, 1109
SlaI CTCGAG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 935
SmlI CTYRAG 3 cut(s) 11, 347, 915
SmoI CTYRAG 3 cut(s) 11, 347, 915
Sse9I AATT 5 cut(s) 382, 678, 865, 1083, 1262
StyD4I CCNGG 7 cut(s) 300, 339, 688, 879, 1111, 1126, 1210
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 5 cut(s) 49, 847, 901, 937, 1195
TaiI ACGT 5 cut(s) 128, 333, 390, 596, 965
TaqI TCGA 5 cut(s) 192, 348, 627, 1026, 1227
TaqII GACCGA 1 cut(s) 481
TasI AATT 5 cut(s) 382, 678, 865, 1083, 1262
TatI WGTACW 1 cut(s) 855
TauI GCSGC 9 cut(s) 145, 235, 238, 241, 358, 497, 500, 522, 610
TfiI GAWTC 2 cut(s) 194, 1088
Tru1I TTAA 2 cut(s) 618, 999
Tru9I TTAA 2 cut(s) 618, 999
TscAI CASTG 3 cut(s) 54, 904, 1283
TseFI GTSAC 2 cut(s) 451, 944
TseI GCWGC 2 cut(s) 145, 586
Tsp45I GTSAC 2 cut(s) 451, 944
TspDTI ATGAA 5 cut(s) 17, 178, 244, 526, 613
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 3 cut(s) 54, 904, 1283
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 5 cut(s) 294, 334, 343, 464, 1109
XapI RAATTY 2 cut(s) 865, 1262
XceI RCATGY 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 1026
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.