Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010699

Physical Location & Seq

Genomic Coordinates Reverse (-)

2108521 .. 2110942

Gene Structure 2422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTGGCCAACACCCTCCACGCGGCCGCCATTTTGCTGAGGGAGGGCGGCGATTGGGATTGGTTCATCAATCTCAGCGCTTCTGATTACCCACTTGTTACTCAGGATGATCTGCTGCACACGTTCTCATACTTGCCGCGGGATCTTAATTTCATCGATCATACGAGCAACATTGGATGGAAAGAGTATCAAAGAGCGAAACCGATAATTGTGGATCCGGGGTTGTATATGACCAAGAAAGCTGATGTTTTTTGGGTTACACAGCGAAGGAGTGTGCCAACAGCTTTCAAACTTTTTACAGGTTCTGCTTGGATGGCACTTTCAAAGCCTTTTGTTGATTACTGCATATGGGGCTGGGACAACCTACCTCGAACTGTTCTCATGTACTATGCAAACTTTATATCGTCCCCGGAGGGATACTTTCACACTGTCATCTGTAATGCTCAAGAGTTCCGCAACACAACTGTGAATAGTGACCTACATTTTATAACGTGGGACAACCCTCCCAAGCAACATCCTCACCACCTTAACCTTGCAGATATGCAAAGGATGGTCGACAGCAATGCTCCCTTTGCAAGAAAGTTTCGCCAAGATGATCCAGTGCTTGACAAAATTGATTCTGAGTTATTGTTTAAGGGTCCTGGTATGCTTGTTCCTGGTGGTTGGTGCATAGGAAAAAGGGACAATGGGTCCGATCCATGCTCTGATATTGGCAGTACCACAATCCTCAGGCCTACCCCTGGAGCAAAAAGGCTCGAGGTTTTGATCAGCTCTCTATTGTCCAATGAGAAATTCCGACCAAAACAGTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009826 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0015020 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032989 GO:0034097 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0060560 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

272

Amino Acids

30.96

Weight (kDa)

7.08

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	1 - 184	1.5e-58	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15050 AT5G39990
fragaria_vesca	FvH4_6g49530
malus_domestica	MD09G1044100.v1.1 MD17G1046000.v1.1
prunus_persica	Prupe.3G273700_v2.0.a1
pyrus_communis	pycom111g03430 pycom111g03440 pycom17g04110
rosa_chinensis	RchiOBHm_Chr2g0169441
rosa_laevigata	RLG00000021864
rosa_multiflora	Rmu_sc0004665.1_g000013 Rmu_sc0006806.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082120
rosa_rugosa	Rorug02G0540000
rosa_samantha	Rh2AG611400 Rh2BG625100 Rh2CG593400 Rh2DG635700
rosa_wichuraiana	Rw2G050740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	555
AccII	CGCG	2 cut(s)	23, 139
AciI	CCGC	6 cut(s)	23, 27, 48, 137, 139, 454
AclWI	GGATC	5 cut(s)	150, 209, 222, 590, 689
AcoI	YGGCCR	2 cut(s)	6, 24
AcsI	RAATTY	1 cut(s)	791
AfaI	GTAC	2 cut(s)	386, 718
AfeI	AGCGCT	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	22, 740
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	289, 324
AhdI	GACNNNNNGTC	1 cut(s)	688
AjnI	CCWGG	3 cut(s)	640, 655, 739
AjuI	GAANNNNNNNTTGG	2 cut(s)	776, 808
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	242, 284, 771
AluI	AGCT	3 cut(s)	242, 284, 771
AlwI	GGATC	5 cut(s)	150, 209, 222, 590, 689
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	755
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	3 cut(s)	6, 24, 731
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	638, 690
AsuC2I	CCSGG	2 cut(s)	219, 410
AsuHPI	GGTGA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	755
AvaII	GGWCC	2 cut(s)	638, 690
AxyI	CCTNAGG	1 cut(s)	728
BalI	TGGCCA	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	3 cut(s)	171, 307, 544
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	3 cut(s)	642, 657, 741
BciVI	GTATCC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	765
BcnI	CCSGG	2 cut(s)	219, 410
BfoI	RGCGCY	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	410
BisI	GCNGC	5 cut(s)	24, 27, 49, 116, 137
BlsI	GCNGC	5 cut(s)	25, 28, 50, 117, 138
Bme1390I	CCNGG	5 cut(s)	219, 410, 642, 657, 741
Bme18I	GGWCC	2 cut(s)	638, 690
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	755
BmgT120I	GGNCC	2 cut(s)	638, 690
BmiI	GGNNCC	3 cut(s)	216, 639, 691
BmrFI	CCNGG	5 cut(s)	219, 410, 642, 657, 741
BpmI	CTGGAG	1 cut(s)	762
Bpu10I	CCTNAGC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	429
BpuMI	CCSGG	2 cut(s)	219, 410
Bsa29I	ATCGAT	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	137, 218, 408, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 740
Bse1I	ACTGG	1 cut(s)	599
Bse21I	CCTNAGG	1 cut(s)	728
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	642, 657, 741
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	4 cut(s)	137, 218, 408, 739
BseGI	GGATG	5 cut(s)	112, 182, 318, 514, 555
BseLI	CCNNNNNNNGG	2 cut(s)	22, 740
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	5 cut(s)	29, 88, 116, 612, 742
BseNI	ACTGG	1 cut(s)	599
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	354
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	23, 139
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	8, 26, 733
BshVI	ATCGAT	1 cut(s)	156
BsiEI	CGRYCG	1 cut(s)	27
BsiHKCI	CYCGRG	1 cut(s)	755
BsiSI	CCGG	2 cut(s)	218, 410
BslFI	GGGAC	4 cut(s)	371, 391, 509, 695
BslI	CCNNNNNNNGG	2 cut(s)	22, 740
BsmFI	GGGAC	4 cut(s)	371, 391, 509, 695
BsnI	GGCC	3 cut(s)	8, 26, 733
BsoBI	CYCGRG	1 cut(s)	755
Bsp143I	GATC	7 cut(s)	109, 142, 157, 214, 595, 694, 765
BspACI	CCGC	6 cut(s)	23, 27, 48, 137, 139, 454
BspANI	GGCC	3 cut(s)	8, 26, 733
BspCNI	CTCAG	5 cut(s)	30, 87, 115, 613, 741
BspDI	ATCGAT	1 cut(s)	156
BspFNI	CGCG	2 cut(s)	23, 139
BspLI	GGNNCC	3 cut(s)	216, 639, 691
BspPI	GGATC	5 cut(s)	150, 209, 222, 590, 689
BsrDI	GCAATG	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	4 cut(s)	137, 218, 408, 739
BssMI	GATC	7 cut(s)	109, 142, 157, 214, 595, 694, 765
Bst2UI	CCWGG	3 cut(s)	642, 657, 741
Bst4CI	ACNGT	4 cut(s)	376, 430, 466, 807
BstDEI	CTNAG	5 cut(s)	38, 74, 102, 621, 728
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	5 cut(s)	112, 182, 318, 514, 555
BstFNI	CGCG	2 cut(s)	23, 139
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	7 cut(s)	112, 145, 160, 217, 598, 697, 768
BstMBI	GATC	7 cut(s)	109, 142, 157, 214, 595, 694, 765
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 351, 572
BstNI	CCWGG	3 cut(s)	642, 657, 741
BstSCI	CCNGG	5 cut(s)	217, 408, 640, 655, 739
BstUI	CGCG	2 cut(s)	23, 139
BstV1I	GCAGC	1 cut(s)	102
BstX2I	RGATCY	2 cut(s)	142, 214
BstYI	RGATCY	2 cut(s)	142, 214
BstZI	CGGCCG	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	156
Bsu36I	CCTNAGG	1 cut(s)	728
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	3 cut(s)	8, 26, 733
BsuTUI	ATCGAT	1 cut(s)	156
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	5 cut(s)	112, 182, 318, 514, 555
BtsIMutI	CAGTG	3 cut(s)	426, 606, 812
CaiI	CAGNNNCTG	1 cut(s)	305
CciNI	GCGGCCGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	638, 690
Cfr42I	CCGCGG	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	385, 717
CviAII	CATG	2 cut(s)	382, 699
CviJI	RGCY	9 cut(s)	8, 26, 242, 284, 328, 354, 733, 754, 771
CviKI_1	RGCY	9 cut(s)	8, 26, 242, 284, 328, 354, 733, 754, 771
CviQI	GTAC	2 cut(s)	385, 717
DdeI	CTNAG	5 cut(s)	38, 74, 102, 621, 728
DpnI	GATC	7 cut(s)	111, 144, 159, 216, 597, 696, 767
DpnII	GATC	7 cut(s)	109, 142, 157, 214, 595, 694, 765
DriI	GACNNNNNGTC	1 cut(s)	688
EaeI	YGGCCR	2 cut(s)	6, 24
EagI	CGGCCG	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	688
EclXI	CGGCCG	1 cut(s)	24
Eco147I	AGGCCT	1 cut(s)	733
Eco47I	GGWCC	2 cut(s)	638, 690
Eco47III	AGCGCT	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	728
Eco88I	CYCGRG	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRII	CCWGG	3 cut(s)	640, 655, 739
FaeI	CATG	2 cut(s)	385, 702
FaqI	GGGAC	4 cut(s)	371, 391, 509, 695
FatI	CATG	2 cut(s)	381, 698
FauI	CCCGC	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	765
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	5 cut(s)	24, 27, 49, 116, 137
FokI	GGATG	5 cut(s)	119, 189, 325, 501, 562
Fsp4HI	GCNGC	5 cut(s)	24, 27, 49, 116, 137
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	5 cut(s)	24, 27, 49, 116, 137
GsaI	CCCAGC	1 cut(s)	358
GsuI	CTGGAG	1 cut(s)	762
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	8, 26, 733
HapII	CCGG	2 cut(s)	218, 410
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	385, 702
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	1 cut(s)	617
HpaII	CCGG	2 cut(s)	218, 410
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	5 cut(s)	85, 622, 694, 706, 797
Hpy188III	TCNNGA	2 cut(s)	104, 446
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	4 cut(s)	376, 430, 466, 807
HpyCH4IV	ACGT	2 cut(s)	122, 491
HpyCH4V	TGCA	8 cut(s)	118, 345, 392, 536, 544, 575, 669, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 351, 572
HpyF3I	CTNAG	5 cut(s)	38, 74, 102, 621, 728
HpySE526I	ACGT	2 cut(s)	122, 491
Hsp92II	CATG	2 cut(s)	385, 702
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	765
KspI	CCGCGG	1 cut(s)	140
Kzo9I	GATC	7 cut(s)	109, 142, 157, 214, 595, 694, 765
LmnI	GCTCC	2 cut(s)	571, 743
Lsp1109I	GCAGC	1 cut(s)	102
MaeII	ACGT	2 cut(s)	122, 491
MaeIII	GTNAC	3 cut(s)	97, 256, 473
MalI	GATC	7 cut(s)	111, 144, 159, 216, 597, 696, 767
MboI	GATC	7 cut(s)	109, 142, 157, 214, 595, 694, 765
MflI	RGATCY	2 cut(s)	142, 214
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	4 cut(s)	148, 207, 612, 791
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	9 cut(s)	26, 33, 37, 378, 406, 513, 528, 737, 751
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	3 cut(s)	147, 528, 633
MslI	CAYNNNNRTG	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	2 cut(s)	218, 410
MspR9I	CCNGG	5 cut(s)	219, 410, 642, 657, 741
MvaI	CCWGG	3 cut(s)	642, 657, 741
MvnI	CGCG	2 cut(s)	23, 139
MwoI	GCNNNNNNNGC	3 cut(s)	314, 351, 572
NciI	CCSGG	2 cut(s)	219, 410
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	7 cut(s)	109, 142, 157, 214, 595, 694, 765
NlaIII	CATG	2 cut(s)	385, 702
NlaIV	GGNNCC	3 cut(s)	216, 639, 691
NmuCI	GTSAC	1 cut(s)	473
NotI	GCGGCCGC	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	464
PaeR7I	CTCGAG	1 cut(s)	755
PceI	AGGCCT	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	617
PkrI	GCNGC	5 cut(s)	25, 28, 50, 117, 138
PpuMI	RGGWCCY	1 cut(s)	638
PsiI	TTATAA	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	3 cut(s)	640, 655, 739
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	3 cut(s)	640, 655, 739
PspN4I	GGNNCC	3 cut(s)	216, 639, 691
PspPI	GGNCC	2 cut(s)	638, 690
PspPPI	RGGWCCY	1 cut(s)	638
PspXI	VCTCGAGB	1 cut(s)	755
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	142, 214
RsaI	GTAC	2 cut(s)	386, 718
RsaNI	GTAC	2 cut(s)	385, 717
RseI	CAYNNNNRTG	1 cut(s)	464
SacII	CCGCGG	1 cut(s)	140
SalI	GTCGAC	1 cut(s)	554
SaqAI	TTAA	3 cut(s)	147, 528, 633
SatI	GCNGC	5 cut(s)	24, 27, 49, 116, 137
Sau3AI	GATC	7 cut(s)	109, 142, 157, 214, 595, 694, 765
Sau96I	GGNCC	2 cut(s)	638, 690
ScrFI	CCNGG	5 cut(s)	219, 410, 642, 657, 741
Sfr274I	CTCGAG	1 cut(s)	755
Sfr303I	CCGCGG	1 cut(s)	140
SgrBI	CCGCGG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	638, 690
SlaI	CTCGAG	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	444, 755
SmoI	CTYRAG	2 cut(s)	444, 755
Sse9I	AATT	4 cut(s)	148, 207, 612, 791
SseBI	AGGCCT	1 cut(s)	733
SsiI	CCGC	6 cut(s)	23, 27, 48, 137, 139, 454
StuI	AGGCCT	1 cut(s)	733
StyD4I	CCNGG	5 cut(s)	217, 408, 640, 655, 739
TaaI	ACNGT	4 cut(s)	376, 430, 466, 807
TaiI	ACGT	2 cut(s)	125, 494
TaqI	TCGA	4 cut(s)	156, 370, 555, 756
TasI	AATT	4 cut(s)	148, 207, 612, 791
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	4 cut(s)	26, 29, 51, 139
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	3 cut(s)	147, 528, 633
Tru9I	TTAA	3 cut(s)	147, 528, 633
TscAI	CASTG	3 cut(s)	433, 606, 812
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	55, 142
TspRI	CASTG	3 cut(s)	433, 606, 812
VpaK11BI	GGWCC	2 cut(s)	638, 690
XapI	RAATTY	1 cut(s)	791
XhoI	CTCGAG	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.