pycom17g04110

Xylosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
2832161 .. 2834868
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g04110.2

Sequence Viewer

Length: 1080 bp
ATGAAGAAGCTCAAGAGCTACTACTCGCATCTGAGGCACCACCAAACAGTGGAGCTCAAATGGATCTTCCCCTTGGCGATTGGCTCCATTGTCTCTCTCTTCCTCCTCTTCCTCACCACCCTGACGTCATCCGACGGCACGCCGCTGCTCCCTTTCTACCGGTCCTTCTCCATCTCCAGCTCCGTCTTCATCGAATCCAAGCTCCACCCGCTTCCCGTCTCCTCCCTCCCGCCGCCGCCGCGCTTTGCGTACTTCATCTCCGGCTCTAACGGCGACGGAAACATGCTGAAGCGGACCCTCCAGGCGCTTTACCACCCGCACAACCACTACGTGGTCCACCTGGACCTTGAGTCGCCGCCCGATGAGCGGATGGATCTGCAGAATTACGTTTCTACCCACCCCGTTTTTGTCAAGTTTGGGAATGTGAAGATGATCAGCAAGGCCAATCTCGTCACTTACAGAGGACCGACTATGGTGGCCAACACCCTCCACGCCGCCGCCGTTTTGCTGAGGGAAGGCGGCGATTGGGATTGGTTCATCAACCTCAGCGCTTCCGATTACCCACTTGTTACTCAGGATGATCTGCTTCATACGTTTTCATACTTGCCGCGGGATCTTAACTTCATCGACCATACAAGCAACATTGGGTGGAAAGAGTATCAAAGAGCGAAACCGATAATGATAGATCCGGGGTTGTATATGACCAAGAAAACCGATGTCTTTTGGGTTACACAGCGAAGGAGTGTGCCAACAGCTTTCAAACTTTTTACAGGTTCTGCTTGGATGGCACTTTCAAAGCCCTTTGTTGATTACTGCATATGGGGATGGGACAACCTACCTCGAACTGTTCTCATGTACTATGCAAACTTTTTATCATCCCCGGAGGGATACTTTCACACGGTCATATGTAACGCTCAAGAGTTCCGCAACACAACTGTGAATAGTGACCTACATTTTATAACGTGGGATAACCCTCCCAAGCAACATCCTCACCACCTTAACCTTGCAGATATGCAAAGGATGGTCGACAGCAATGCTCCCTTTGCAAGAAAGTTTCGCCAAGATCGATCCAGTGCTTGA

Protein Analysis

360

Amino Acids

41.37

Weight (kDa)

9.0

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010699)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
AatII GACGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 36
AccB7I CCANNNNNTGG 2 cut(s) 49, 331
AccBSI CCGCTC 1 cut(s) 367
AccI GTMKAC 1 cut(s) 1026
AccII CGCG 2 cut(s) 241, 610
AclWI GGATC 5 cut(s) 71, 381, 621, 680, 1062
AcoI YGGCCR 1 cut(s) 477
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 2 cut(s) 251, 857
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 49, 331, 366
AgeI ACCGGT 1 cut(s) 159
AgsI TTSAA 2 cut(s) 760, 795
AhdI GACNNNNNGTC 1 cut(s) 349
AjnI CCWGG 2 cut(s) 300, 339
AleI CACNNNNGTG 1 cut(s) 935
AluBI AGCT 6 cut(s) 10, 18, 55, 180, 202, 755
AluI AGCT 6 cut(s) 10, 18, 55, 180, 202, 755
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 97, 223
AlwI GGATC 5 cut(s) 71, 381, 621, 680, 1062
AlwNI CAGNNNCTG 1 cut(s) 776
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 2 cut(s) 441, 477
ApeKI GCWGC 1 cut(s) 145
AsiGI ACCGGT 1 cut(s) 159
AspLEI GCGC 3 cut(s) 243, 307, 551
AspS9I GGNCC 5 cut(s) 162, 294, 334, 343, 464
AsuC2I CCSGG 2 cut(s) 690, 881
AsuHPI GGTGA 2 cut(s) 106, 983
AvaII GGWCC 5 cut(s) 162, 294, 334, 343, 464
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 57
BbvCI CCTCAGC 2 cut(s) 509, 545
BbvI GCAGC 1 cut(s) 132
BccI CCATC 5 cut(s) 179, 364, 778, 819, 1015
BceAI ACGGC 3 cut(s) 151, 286, 485
BcgI CGANNNNNNTGC 2 cut(s) 1016, 1050
BciT130I CCWGG 2 cut(s) 302, 341
BciVI GTATCC 1 cut(s) 881
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 2 cut(s) 690, 881
BcoDI GTCTC 2 cut(s) 97, 223
BfmI CTRYAG 1 cut(s) 377
BfoI RGCGCY 2 cut(s) 308, 552
BfuI GTATCC 1 cut(s) 881
Bme1390I CCNGG 4 cut(s) 302, 341, 690, 881
Bme18I GGWCC 5 cut(s) 162, 294, 334, 343, 464
BmeRI GACNNNNNGTC 1 cut(s) 349
BmgT120I GGNCC 5 cut(s) 162, 294, 334, 343, 464
BmiI GGNNCC 3 cut(s) 38, 85, 296
BmrFI CCNGG 4 cut(s) 302, 341, 690, 881
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 178
BpmI CTGGAG 2 cut(s) 160, 284
Bpu10I CCTNAGC 2 cut(s) 509, 545
BpuEI CTTGAG 2 cut(s) 368, 900
BpuMI CCSGG 2 cut(s) 690, 881
Bsa29I ATCGAT 1 cut(s) 1066
BsaAI YACGTR 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 72, 608, 689, 879
BsaWI WCCGGW 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 331, 366
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 1071
Bse3DI GCAATG 1 cut(s) 1039
BseBI CCWGG 2 cut(s) 302, 341
BseCI ATCGAT 1 cut(s) 1066
BseDI CCNNGG 4 cut(s) 72, 608, 689, 879
BseGI GGATG 8 cut(s) 128, 375, 583, 789, 830, 875, 985, 1026
BseLI CCNNNNNNNGG 3 cut(s) 49, 331, 366
BseMI GCAATG 1 cut(s) 1039
BseMII CTCAG 4 cut(s) 23, 500, 559, 587
BseNI ACTGG 1 cut(s) 1071
BseRI GAGGAG 2 cut(s) 95, 211
BseXI GCAGC 1 cut(s) 132
Bsh1236I CGCG 2 cut(s) 241, 610
BshFI GGCC 2 cut(s) 443, 479
BshNI GGYRCC 1 cut(s) 36
BshTI ACCGGT 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 1066
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 4 cut(s) 160, 261, 689, 881
BslFI GGGAC 1 cut(s) 842
BslI CCNNNNNNNGG 3 cut(s) 49, 331, 366
BsmAI GTCTC 2 cut(s) 97, 223
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 842
BsnI GGCC 2 cut(s) 443, 479
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 8 cut(s) 63, 373, 432, 580, 613, 685, 1063, 1067
BspANI GGCC 2 cut(s) 443, 479
BspCNI CTCAG 4 cut(s) 24, 501, 558, 586
BspDI ATCGAT 1 cut(s) 1066
BspFNI CGCG 2 cut(s) 241, 610
BspLI GGNNCC 3 cut(s) 38, 85, 296
BspMAI CTGCAG 1 cut(s) 381
BspPI GGATC 5 cut(s) 71, 381, 621, 680, 1062
BspT107I GGYRCC 1 cut(s) 36
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 1039
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 1 cut(s) 1071
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 4 cut(s) 72, 608, 689, 879
BssMI GATC 8 cut(s) 63, 373, 432, 580, 613, 685, 1063, 1067
BssNI GRCGYC 1 cut(s) 125
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 302, 341
Bst4CI ACNGT 4 cut(s) 49, 847, 901, 937
Bst6I CTCTTC 2 cut(s) 104, 113
BstACI GRCGYC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 140
BstDEI CTNAG 4 cut(s) 32, 509, 545, 573
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 8 cut(s) 128, 375, 583, 789, 830, 875, 985, 1026
BstFNI CGCG 2 cut(s) 241, 610
BstH2I RGCGCY 2 cut(s) 308, 552
BstHHI GCGC 3 cut(s) 243, 307, 551
BstKTI GATC 8 cut(s) 66, 376, 435, 583, 616, 688, 1066, 1070
BstMAI GTCTC 2 cut(s) 97, 223
BstMBI GATC 8 cut(s) 63, 373, 432, 580, 613, 685, 1063, 1067
BstMWI GCNNNNNNNGC 7 cut(s) 34, 208, 238, 270, 364, 785, 1043
BstNI CCWGG 2 cut(s) 302, 341
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 4 cut(s) 300, 339, 688, 879
BstSFI CTRYAG 1 cut(s) 377
BstUI CGCG 2 cut(s) 241, 610
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 178
BstX2I RGATCY 4 cut(s) 63, 373, 613, 685
BstYI RGATCY 4 cut(s) 63, 373, 613, 685
Bsu15I ATCGAT 1 cut(s) 1066
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 2 cut(s) 443, 479
BsuTUI ATCGAT 1 cut(s) 1066
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 8 cut(s) 128, 375, 583, 789, 830, 875, 985, 1026
BtsIMutI CAGTG 2 cut(s) 54, 1078
Cac8I GCNNGC 1 cut(s) 140
CaiI CAGNNNCTG 1 cut(s) 776
CfoI GCGC 3 cut(s) 243, 307, 551
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 5 cut(s) 162, 294, 334, 343, 464
Cfr42I CCGCGG 1 cut(s) 611
ClaI ATCGAT 1 cut(s) 1066
Csp6I GTAC 2 cut(s) 250, 856
CspAI ACCGGT 1 cut(s) 159
CviAII CATG 2 cut(s) 283, 853
CviQI GTAC 2 cut(s) 250, 856
DdeI CTNAG 4 cut(s) 32, 509, 545, 573
DpnI GATC 8 cut(s) 65, 375, 434, 582, 615, 687, 1065, 1069
DpnII GATC 8 cut(s) 63, 373, 432, 580, 613, 685, 1063, 1067
DraIII CACNNNGTG 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 104, 113
Eam1105I GACNNNNNGTC 1 cut(s) 349
EarI CTCTTC 2 cut(s) 104, 113
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 5 cut(s) 162, 294, 334, 343, 464
Eco47III AGCGCT 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 300, 339
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 2 cut(s) 286, 856
FaqI GGGAC 1 cut(s) 842
FatI CATG 2 cut(s) 282, 852
FauI CCCGC 4 cut(s) 216, 237, 324, 603
FauNDI CATATG 2 cut(s) 818, 905
FbaI TGATCA 1 cut(s) 432
FblI GTMKAC 1 cut(s) 1026
FokI GGATG 8 cut(s) 115, 382, 590, 796, 837, 862, 972, 1033
FriOI GRGCYC 1 cut(s) 57
GlaI GCGC 3 cut(s) 242, 306, 550
GsuI CTGGAG 2 cut(s) 160, 284
HaeII RGCGCY 2 cut(s) 308, 552
HaeIII GGCC 2 cut(s) 443, 479
HapII CCGG 4 cut(s) 160, 261, 689, 881
HhaI GCGC 3 cut(s) 243, 307, 551
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 2 cut(s) 286, 856
Hin6I GCGC 3 cut(s) 241, 305, 549
HinP1I GCGC 3 cut(s) 241, 305, 549
HincII GTYRAC 1 cut(s) 1027
HindII GTYRAC 1 cut(s) 1027
HinfI GANTC 2 cut(s) 194, 350
HpaII CCGG 4 cut(s) 160, 261, 689, 881
HphI GGTGA 2 cut(s) 106, 983
Hpy166II GTNNAC 2 cut(s) 337, 1027
Hpy188I TCNGA 3 cut(s) 33, 133, 556
Hpy188III TCNNGA 3 cut(s) 13, 575, 917
Hpy8I GTNNAC 2 cut(s) 337, 1027
Hpy99I CGWCG 2 cut(s) 137, 278
HpyAV CCTTC 3 cut(s) 175, 509, 732
HpyCH4III ACNGT 4 cut(s) 49, 847, 901, 937
HpyCH4IV ACGT 5 cut(s) 125, 330, 387, 593, 962
HpyCH4V TGCA 6 cut(s) 379, 816, 863, 1007, 1015, 1046
HpyF10VI GCNNNNNNNGC 7 cut(s) 34, 208, 238, 270, 364, 785, 1043
HpyF3I CTNAG 4 cut(s) 32, 509, 545, 573
HpySE526I ACGT 5 cut(s) 125, 330, 387, 593, 962
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 286, 856
HspAI GCGC 3 cut(s) 241, 305, 549
Ksp22I TGATCA 1 cut(s) 432
KspI CCGCGG 1 cut(s) 611
Kzo9I GATC 8 cut(s) 63, 373, 432, 580, 613, 685, 1063, 1067
LmnI GCTCC 6 cut(s) 52, 89, 153, 185, 207, 1042
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 37
MaeII ACGT 5 cut(s) 125, 330, 387, 593, 962
MaeIII GTNAC 5 cut(s) 451, 568, 727, 908, 944
MalI GATC 8 cut(s) 65, 375, 434, 582, 615, 687, 1065, 1069
MbiI CCGCTC 1 cut(s) 367
MboI GATC 8 cut(s) 63, 373, 432, 580, 613, 685, 1063, 1067
MboII GAAGA 6 cut(s) 16, 58, 91, 100, 178, 439
MflI RGATCY 4 cut(s) 63, 373, 613, 685
MhlI GDGCHC 1 cut(s) 57
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 1 cut(s) 382
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 156
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 618, 999
MslI CAYNNNNRTG 1 cut(s) 935
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 145, 610
MspI CCGG 4 cut(s) 160, 261, 689, 881
MspR9I CCNGG 4 cut(s) 302, 341, 690, 881
MvaI CCWGG 2 cut(s) 302, 341
MvnI CGCG 2 cut(s) 241, 610
MwoI GCNNNNNNNGC 7 cut(s) 34, 208, 238, 270, 364, 785, 1043
NciI CCSGG 2 cut(s) 690, 881
NdeI CATATG 2 cut(s) 818, 905
NdeII GATC 8 cut(s) 63, 373, 432, 580, 613, 685, 1063, 1067
NlaIII CATG 2 cut(s) 286, 856
NlaIV GGNNCC 3 cut(s) 38, 85, 296
NmuCI GTSAC 2 cut(s) 451, 944
NspI RCATGY 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 935
PcsI WCGNNNNNNNCGW 2 cut(s) 498, 1063
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 2 cut(s) 49, 331
PinAI ACCGGT 1 cut(s) 159
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
Ppu21I YACGTR 1 cut(s) 331
PsiI TTATAA 1 cut(s) 959
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 300, 339
PspGI CCWGG 2 cut(s) 300, 339
PspN4I GGNNCC 3 cut(s) 38, 85, 296
PspPI GGNCC 5 cut(s) 162, 294, 334, 343, 464
PstI CTGCAG 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 776
PsuI RGATCY 4 cut(s) 63, 373, 613, 685
RsaI GTAC 2 cut(s) 251, 857
RsaNI GTAC 2 cut(s) 250, 856
RseI CAYNNNNRTG 1 cut(s) 935
SacI GAGCTC 1 cut(s) 57
SacII CCGCGG 1 cut(s) 611
SalI GTCGAC 1 cut(s) 1025
SaqAI TTAA 2 cut(s) 618, 999
Sau3AI GATC 8 cut(s) 63, 373, 432, 580, 613, 685, 1063, 1067
Sau96I GGNCC 5 cut(s) 162, 294, 334, 343, 464
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 4 cut(s) 302, 341, 690, 881
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 377
Sfr303I CCGCGG 1 cut(s) 611
SgrBI CCGCGG 1 cut(s) 611
SinI GGWCC 5 cut(s) 162, 294, 334, 343, 464
SmiMI CAYNNNNRTG 1 cut(s) 935
SmlI CTYRAG 3 cut(s) 11, 347, 915
SmoI CTYRAG 3 cut(s) 11, 347, 915
Sse9I AATT 1 cut(s) 382
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 4 cut(s) 300, 339, 688, 879
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 4 cut(s) 49, 847, 901, 937
TaiI ACGT 5 cut(s) 128, 333, 390, 596, 965
TaqI TCGA 5 cut(s) 192, 627, 841, 1026, 1066
TaqII GACCGA 1 cut(s) 481
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 855
TauI GCSGC 9 cut(s) 145, 235, 238, 241, 358, 497, 500, 522, 610
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 618, 999
Tru9I TTAA 2 cut(s) 618, 999
TscAI CASTG 2 cut(s) 54, 1078
TseFI GTSAC 2 cut(s) 451, 944
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 2 cut(s) 451, 944
TspDTI ATGAA 7 cut(s) 17, 178, 244, 526, 578, 588, 613
TspGWI ACGGA 2 cut(s) 172, 291
TspRI CASTG 2 cut(s) 54, 1078
Van91I CCANNNNNTGG 2 cut(s) 49, 331
VpaK11BI GGWCC 5 cut(s) 162, 294, 334, 343, 464
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 1026
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.