pycom111g03430

Xylosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
2092733 .. 2095364
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03430.1

Sequence Viewer

Length: 987 bp
ATGCTGAAGCGGACCCTCCAGGCCCTCTACCACACGCACAACTGCTACGTCGTCCACCTGGACCTCGAGTCGCCGCCCGAGGAGCGGATTGATCTACAGAATTACGCTTCTACCCACCCCGTTTTTGTCAGGTTTAGGAATGTGAAGATCGATCAGCAAGGCCAACCTCGTCACTTACAGGGGCCCGACTACGCGGCCGCCATTTTGCTGAGGGAGGGCGGCGATTGGGATTGGTTCATCAATCTCAGCGCTTCTGACTACCCACTTGTTACTCAGGATAATCTGATGCACACGTTCTCATACTTGCCGCGGGATCTTAATTTCATCGATCGTACAAGCAACATTGGATGGAAAGAGTATCAAAGAGCGAAACCGATAATTGTGGATCCGGGGTTGTATATGACCAAGAAAACTGATGTTTTTTGGGTTACACAGCGAAGGAGTGTGCCAACAGCTTTCAAACTTTTTACAGGTTCTGCTTGGATGGCACTTTCAAAGCCTTTTGTTGATTACTGCATATGGGGCTGGGACAACCTACCTCGAGCTGTTCTCATGTACTACGCAAACTTTGTATCGTCCCCGGAGGGATACTTTCACACTGTCATCTGTAATGCTCAAGAGTTCCGCAACACAACTGTGAATAGTGACCTACATTTTATAACGTGGGACAACCCTCCCAAGCAACATCCTCACCACCTTAACCTTGCAGATATGCAAAGGATGGTCGACAGCAATGCTCCCTTTGCAAGAAAGTTTCGCCAAGATGATCCAGTGCTTGACAAAATTGATTCTGAGTTGTTGTTTAAGGGTCCTGGTATGCTTGTTCCTGGTGGCTGGTGCATAGGAAAAAGGGACAATGGGTCCGATCCATGCTCTGATATTGGCTGTACCACAATCCTCAGGCCTACCCCTGGAGCAAAAAGGCTCGAAGTTTTGATCAGCTCTCAACAAACCAAAGAGAAATACCGACCAAAACAGTGCAAATGA

Protein Analysis

329

Amino Acids

37.9

Weight (kDa)

8.38

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 1 - 241 1.7e-63 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010699)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 659
AccBSI CCGCTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 726
AccII CGCG 2 cut(s) 194, 310
AciI CCGC 9 cut(s) 10, 74, 85, 194, 198, 219, 308, 310, 625
AclWI GGATC 5 cut(s) 321, 380, 393, 761, 860
AcoI YGGCCR 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 3 cut(s) 334, 557, 889
AfeI AGCGCT 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 84, 911
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 2 cut(s) 460, 495
AhdI GACNNNNNGTC 2 cut(s) 67, 859
AjnI CCWGG 5 cut(s) 18, 57, 811, 826, 910
AleI CACNNNNGTG 1 cut(s) 635
AluBI AGCT 3 cut(s) 455, 545, 942
AluI AGCT 3 cut(s) 455, 545, 942
AlwI GGATC 5 cut(s) 321, 380, 393, 761, 860
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 3 cut(s) 65, 77, 540
Aor51HI AGCGCT 1 cut(s) 250
AoxI GGCC 5 cut(s) 21, 160, 182, 195, 902
ApaI GGGCCC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 7 cut(s) 12, 22, 61, 182, 183, 809, 861
AsuC2I CCSGG 2 cut(s) 390, 581
AsuHPI GGTGA 1 cut(s) 683
AvaI CYCGRG 3 cut(s) 65, 77, 540
AvaII GGWCC 4 cut(s) 12, 61, 809, 861
AxyI CCTNAGG 1 cut(s) 899
BaeGI GKGCMC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 385
BanII GRGCYC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 209
BccI CCATC 3 cut(s) 342, 478, 715
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 5 cut(s) 20, 59, 813, 828, 912
BciVI GTATCC 1 cut(s) 581
BclI TGATCA 1 cut(s) 936
BcnI CCSGG 2 cut(s) 390, 581
BfmI CTRYAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 252
BfuI GTATCC 1 cut(s) 581
BisI GCNGC 5 cut(s) 74, 195, 198, 220, 308
BlsI GCNGC 5 cut(s) 75, 196, 199, 221, 309
Bme1390I CCNGG 7 cut(s) 20, 59, 390, 581, 813, 828, 912
Bme18I GGWCC 4 cut(s) 12, 61, 809, 861
BmeRI GACNNNNNGTC 2 cut(s) 67, 859
BmeT110I CYCGRG 3 cut(s) 65, 77, 540
BmgT120I GGNCC 7 cut(s) 12, 22, 61, 182, 183, 809, 861
BmiI GGNNCC 6 cut(s) 14, 183, 184, 387, 810, 862
BmrFI CCNGG 7 cut(s) 20, 59, 390, 581, 813, 828, 912
BmsI GCATC 1 cut(s) 276
BplI GAGNNNNNCTC 2 cut(s) 534, 566
BpmI CTGGAG 1 cut(s) 933
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 600
BpuMI CCSGG 2 cut(s) 390, 581
Bsa29I ATCGAT 2 cut(s) 150, 327
BsaJI CCNNGG 5 cut(s) 78, 308, 389, 579, 910
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 911
Bse1I ACTGG 1 cut(s) 770
Bse21I CCTNAGG 1 cut(s) 899
Bse3DI GCAATG 1 cut(s) 739
BseBI CCWGG 5 cut(s) 20, 59, 813, 828, 912
BseCI ATCGAT 2 cut(s) 150, 327
BseDI CCNNGG 5 cut(s) 78, 308, 389, 579, 910
BseGI GGATG 4 cut(s) 353, 489, 685, 726
BseLI CCNNNNNNNGG 2 cut(s) 84, 911
BseMI GCAATG 1 cut(s) 739
BseMII CTCAG 5 cut(s) 200, 259, 287, 783, 913
BseNI ACTGG 1 cut(s) 770
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 186
BseX3I CGGCCG 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 525
Bsh1236I CGCG 2 cut(s) 194, 310
Bsh1285I CGRYCG 2 cut(s) 198, 331
BshFI GGCC 5 cut(s) 23, 162, 184, 197, 904
BshVI ATCGAT 2 cut(s) 150, 327
BsiEI CGRYCG 2 cut(s) 198, 331
BsiHKCI CYCGRG 3 cut(s) 65, 77, 540
BsiSI CCGG 2 cut(s) 389, 581
BslFI GGGAC 4 cut(s) 542, 562, 680, 866
BslI CCNNNNNNNGG 2 cut(s) 84, 911
BsmFI GGGAC 4 cut(s) 542, 562, 680, 866
BsnI GGCC 5 cut(s) 23, 162, 184, 197, 904
BsoBI CYCGRG 3 cut(s) 65, 77, 540
Bsp120I GGGCCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 9 cut(s) 91, 147, 151, 313, 328, 385, 766, 865, 936
BspACI CCGC 9 cut(s) 10, 74, 85, 194, 198, 219, 308, 310, 625
BspANI GGCC 5 cut(s) 23, 162, 184, 197, 904
BspCNI CTCAG 5 cut(s) 201, 258, 286, 784, 912
BspDI ATCGAT 2 cut(s) 150, 327
BspFNI CGCG 2 cut(s) 194, 310
BspLI GGNNCC 6 cut(s) 14, 183, 184, 387, 810, 862
BspPI GGATC 5 cut(s) 321, 380, 393, 761, 860
BsrBI CCGCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 739
BsrI ACTGG 1 cut(s) 770
BssECI CCNNGG 5 cut(s) 78, 308, 389, 579, 910
BssMI GATC 9 cut(s) 91, 147, 151, 313, 328, 385, 766, 865, 936
Bst2UI CCWGG 5 cut(s) 20, 59, 813, 828, 912
Bst4CI ACNGT 3 cut(s) 601, 637, 978
BstDEI CTNAG 5 cut(s) 209, 245, 273, 792, 899
BstDSI CCRYGG 1 cut(s) 308
BstF5I GGATG 4 cut(s) 353, 489, 685, 726
BstFNI CGCG 2 cut(s) 194, 310
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 9 cut(s) 94, 150, 154, 316, 331, 388, 769, 868, 939
BstMBI GATC 9 cut(s) 91, 147, 151, 313, 328, 385, 766, 865, 936
BstMCI CGRYCG 2 cut(s) 198, 331
BstMWI GCNNNNNNNGC 4 cut(s) 82, 485, 522, 743
BstNI CCWGG 5 cut(s) 20, 59, 813, 828, 912
BstSCI CCNGG 7 cut(s) 18, 57, 388, 579, 811, 826, 910
BstSFI CTRYAG 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 2 cut(s) 194, 310
BstX2I RGATCY 2 cut(s) 313, 385
BstYI RGATCY 2 cut(s) 313, 385
BstZI CGGCCG 1 cut(s) 195
Bsu15I ATCGAT 2 cut(s) 150, 327
Bsu36I CCTNAGG 1 cut(s) 899
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 5 cut(s) 23, 162, 184, 197, 904
BsuTUI ATCGAT 2 cut(s) 150, 327
BtgI CCRYGG 1 cut(s) 308
BtsCI GGATG 4 cut(s) 353, 489, 685, 726
BtsIMutI CAGTG 3 cut(s) 597, 777, 983
CaiI CAGNNNCTG 1 cut(s) 476
CciNI GCGGCCGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 251
Cfr13I GGNCC 7 cut(s) 12, 22, 61, 182, 183, 809, 861
Cfr42I CCGCGG 1 cut(s) 311
ClaI ATCGAT 2 cut(s) 150, 327
Csp6I GTAC 3 cut(s) 333, 556, 888
CviAII CATG 2 cut(s) 553, 870
CviQI GTAC 3 cut(s) 333, 556, 888
DdeI CTNAG 5 cut(s) 209, 245, 273, 792, 899
DpnI GATC 9 cut(s) 93, 149, 153, 315, 330, 387, 768, 867, 938
DpnII GATC 9 cut(s) 91, 147, 151, 313, 328, 385, 766, 865, 936
DriI GACNNNNNGTC 2 cut(s) 67, 859
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1105I GACNNNNNGTC 2 cut(s) 67, 859
EclXI CGGCCG 1 cut(s) 195
Eco147I AGGCCT 1 cut(s) 904
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 4 cut(s) 12, 61, 809, 861
Eco47III AGCGCT 1 cut(s) 250
Eco52I CGGCCG 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 26
Eco81I CCTNAGG 1 cut(s) 899
Eco88I CYCGRG 3 cut(s) 65, 77, 540
EcoO109I RGGNCCY 3 cut(s) 22, 182, 809
EcoRII CCWGG 5 cut(s) 18, 57, 811, 826, 910
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 2 cut(s) 556, 873
FaqI GGGAC 4 cut(s) 542, 562, 680, 866
FatI CATG 2 cut(s) 552, 869
FauI CCCGC 1 cut(s) 303
FauNDI CATATG 1 cut(s) 518
FbaI TGATCA 1 cut(s) 936
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 5 cut(s) 74, 195, 198, 220, 308
FokI GGATG 4 cut(s) 360, 496, 672, 733
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 5 cut(s) 74, 195, 198, 220, 308
GlaI GCGC 1 cut(s) 250
GluI GCNGC 5 cut(s) 74, 195, 198, 220, 308
GsaI CCCAGC 1 cut(s) 529
GsuI CTGGAG 1 cut(s) 933
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 5 cut(s) 23, 162, 184, 197, 904
HapII CCGG 2 cut(s) 389, 581
HhaI GCGC 1 cut(s) 251
Hin1II CATG 2 cut(s) 556, 873
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 727
HindII GTYRAC 1 cut(s) 727
HinfI GANTC 2 cut(s) 68, 788
HpaII CCGG 2 cut(s) 389, 581
HphI GGTGA 1 cut(s) 683
Hpy166II GTNNAC 2 cut(s) 55, 727
Hpy188I TCNGA 5 cut(s) 256, 285, 793, 865, 877
Hpy188III TCNNGA 2 cut(s) 275, 617
Hpy8I GTNNAC 2 cut(s) 55, 727
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 3 cut(s) 601, 637, 978
HpyCH4IV ACGT 3 cut(s) 48, 293, 662
HpyCH4V TGCA 7 cut(s) 289, 516, 707, 715, 746, 840, 981
HpyF10VI GCNNNNNNNGC 4 cut(s) 82, 485, 522, 743
HpyF3I CTNAG 5 cut(s) 209, 245, 273, 792, 899
HpySE526I ACGT 3 cut(s) 48, 293, 662
Hsp92II CATG 2 cut(s) 556, 873
HspAI GCGC 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 936
KspI CCGCGG 1 cut(s) 311
Kzo9I GATC 9 cut(s) 91, 147, 151, 313, 328, 385, 766, 865, 936
LmnI GCTCC 3 cut(s) 82, 742, 914
LweI GCATC 1 cut(s) 276
MaeII ACGT 3 cut(s) 48, 293, 662
MaeIII GTNAC 4 cut(s) 170, 268, 427, 644
MalI GATC 9 cut(s) 93, 149, 153, 315, 330, 387, 768, 867, 938
MbiI CCGCTC 1 cut(s) 85
MboI GATC 9 cut(s) 91, 147, 151, 313, 328, 385, 766, 865, 936
MboII GAAGA 1 cut(s) 157
MflI RGATCY 2 cut(s) 313, 385
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 4 cut(s) 100, 319, 378, 783
MlyI GAGTC 1 cut(s) 77
MseI TTAA 3 cut(s) 318, 699, 804
MslI CAYNNNNRTG 1 cut(s) 635
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 2 cut(s) 389, 581
MspR9I CCNGG 7 cut(s) 20, 59, 390, 581, 813, 828, 912
MvaI CCWGG 5 cut(s) 20, 59, 813, 828, 912
MvnI CGCG 2 cut(s) 194, 310
MwoI GCNNNNNNNGC 4 cut(s) 82, 485, 522, 743
NciI CCSGG 2 cut(s) 390, 581
NdeI CATATG 1 cut(s) 518
NdeII GATC 9 cut(s) 91, 147, 151, 313, 328, 385, 766, 865, 936
NlaIII CATG 2 cut(s) 556, 873
NlaIV GGNNCC 6 cut(s) 14, 183, 184, 387, 810, 862
NmuCI GTSAC 2 cut(s) 170, 644
NotI GCGGCCGC 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 635
PaeR7I CTCGAG 2 cut(s) 65, 540
PceI AGGCCT 1 cut(s) 904
PfeI GAWTC 1 cut(s) 788
PkrI GCNGC 5 cut(s) 75, 196, 199, 221, 309
Ple19I CGATCG 1 cut(s) 331
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 809
PsiI TTATAA 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 5 cut(s) 18, 57, 811, 826, 910
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 5 cut(s) 18, 57, 811, 826, 910
PspN4I GGNNCC 6 cut(s) 14, 183, 184, 387, 810, 862
PspOMI GGGCCC 1 cut(s) 182
PspPI GGNCC 7 cut(s) 12, 22, 61, 182, 183, 809, 861
PspPPI RGGWCCY 1 cut(s) 809
PspXI VCTCGAGB 2 cut(s) 65, 540
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 2 cut(s) 313, 385
PvuI CGATCG 1 cut(s) 331
RsaI GTAC 3 cut(s) 334, 557, 889
RsaNI GTAC 3 cut(s) 333, 556, 888
RseI CAYNNNNRTG 1 cut(s) 635
SacII CCGCGG 1 cut(s) 311
SalI GTCGAC 1 cut(s) 725
SaqAI TTAA 3 cut(s) 318, 699, 804
SatI GCNGC 5 cut(s) 74, 195, 198, 220, 308
Sau3AI GATC 9 cut(s) 91, 147, 151, 313, 328, 385, 766, 865, 936
Sau96I GGNCC 7 cut(s) 12, 22, 61, 182, 183, 809, 861
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 7 cut(s) 20, 59, 390, 581, 813, 828, 912
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 95
Sfr274I CTCGAG 2 cut(s) 65, 540
Sfr303I CCGCGG 1 cut(s) 311
SgrBI CCGCGG 1 cut(s) 311
SinI GGWCC 4 cut(s) 12, 61, 809, 861
SlaI CTCGAG 2 cut(s) 65, 540
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 3 cut(s) 65, 540, 615
SmoI CTYRAG 3 cut(s) 65, 540, 615
Sse9I AATT 4 cut(s) 100, 319, 378, 783
SseBI AGGCCT 1 cut(s) 904
SsiI CCGC 9 cut(s) 10, 74, 85, 194, 198, 219, 308, 310, 625
StuI AGGCCT 1 cut(s) 904
StyD4I CCNGG 7 cut(s) 18, 57, 388, 579, 811, 826, 910
TaaI ACNGT 3 cut(s) 601, 637, 978
TaiI ACGT 3 cut(s) 51, 296, 665
TaqI TCGA 6 cut(s) 66, 150, 327, 541, 726, 927
TasI AATT 4 cut(s) 100, 319, 378, 783
TatI WGTACW 1 cut(s) 555
TauI GCSGC 5 cut(s) 76, 197, 200, 222, 310
TfiI GAWTC 1 cut(s) 788
Tru1I TTAA 3 cut(s) 318, 699, 804
Tru9I TTAA 3 cut(s) 318, 699, 804
TscAI CASTG 3 cut(s) 604, 777, 983
TseFI GTSAC 2 cut(s) 170, 644
Tsp45I GTSAC 2 cut(s) 170, 644
TspDTI ATGAA 2 cut(s) 226, 313
TspRI CASTG 3 cut(s) 604, 777, 983
VpaK11BI GGWCC 4 cut(s) 12, 61, 809, 861
XhoI CTCGAG 2 cut(s) 65, 540
XmiI GTMKAC 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.