Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010699

Physical Location & Seq

Genomic Coordinates Forward (+)

67028210 .. 67029457

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0540000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGTGAGAACTCCTTGCTGTGATGAAAGGGGAATGAAGAAAGGTACATGGACTCCGGAGGAAGATAGGAAGCTCATAGCTTATGTTACTAGGTATGGCTGCTGGAATTGGCGCCAACTCCCCAAGTTTGCTGGGCTTTCAAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGCTGAATTACTTGAGGCCGAACATCAAGAGAGGAAACTACACCAGTGAAGAAGAGGAAATAATAATCAGACTTCACGAAAAGCTGGGGAACAAATGGTCTGCGATTGCGGCACAGCTTCAGGGAAGAACTGACAATGAGGTTAAGAATCACTGGCACACAAACCTCAAGAAACGCTTAATGATGAACAAGCACAAGGCCTCCTCAGTTTCAATCACACGCGATGATCATCATGAAGAAGTAGTACCCAAATCATCGGATCAGCCAAAGACTACTGCTCCTGCTGATTTCGCAAATGCAGAAACTACTGATCCTGCTGATTTCGCAAATGCAGAAACTACTGTTGATCAAATTCCCCCAATTGATTATCTTGATTACCCAGAACTGTGGTCGCCACAGCCTTCATCGAGTGAGGTCTCGTCCATGACCAGCGATACTGCGGTTGCAATTACTGCCGCAGATGGTTTGGTTGTGGAGGACAATGCTACTTCAGCTGCCATGGGAACAATTTATGGAGATTTCGGCGATAATTTCTGGACAGAACCATTTCTGGCTGATAATTCCTACAACCCAAGTGGTTTTTATACACCCTTGATGGAGCCTGAATTTCTGTATCCATCATTTGATGGAGATTTCTTGTACGGAGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009653 GO:0009826 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0015020 GO:0016020 GO:0016043 GO:0016049 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0032989 GO:0034097 GO:0034645 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0060560 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0071840 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

273

Amino Acids

30.88

Weight (kDa)

5.14

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.1e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	7.2e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	3e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15050 AT5G39990
fragaria_vesca	FvH4_6g49530
malus_domestica	MD09G1044100.v1.1 MD17G1046000.v1.1
prunus_persica	Prupe.3G273700_v2.0.a1
pyrus_communis	pycom111g03430 pycom111g03440 pycom17g04110
rosa_chinensis	RchiOBHm_Chr2g0169441
rosa_laevigata	RLG00000021864
rosa_multiflora	Rmu_sc0004665.1_g000013 Rmu_sc0006806.1_g000039
rosa_roxburghii	Rroxscaffold_2G00082120
rosa_rugosa	Rorug02G0540000
rosa_samantha	Rh2AG611400 Rh2BG625100 Rh2CG593400 Rh2DG635700
rosa_wichuraiana	Rw2G050740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccII	CGCG	1 cut(s)	390
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	3 cut(s)	278, 608, 624
AclWI	GGATC	2 cut(s)	435, 473
AcsI	RAATTY	2 cut(s)	519, 773
AcuI	CTGAAG	2 cut(s)	272, 642
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	3 cut(s)	46, 414, 809
AgsI	TTSAA	2 cut(s)	141, 381
AluBI	AGCT	5 cut(s)	73, 80, 253, 286, 662
AluI	AGCT	5 cut(s)	73, 80, 253, 286, 662
Alw26I	GTCTC	1 cut(s)	589
AlwI	GGATC	2 cut(s)	435, 473
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	185, 366
ApeKI	GCWGC	2 cut(s)	99, 662
ApoI	RAATTY	2 cut(s)	519, 773
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	594, 627
BanI	GGYRCC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	86, 649
BccI	CCATC	4 cut(s)	623, 757, 788, 793
BciVI	GTATCC	1 cut(s)	792
BclI	TGATCA	2 cut(s)	394, 514
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	115
BfuI	GTATCC	1 cut(s)	792
BisI	GCNGC	4 cut(s)	100, 279, 624, 663
BlsI	GCNGC	4 cut(s)	101, 280, 625, 664
BmiI	GGNNCC	2 cut(s)	113, 768
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	2 cut(s)	202, 320
BsaBI	GATNNNNATC	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	1 cut(s)	666
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	6 cut(s)	37, 67, 353, 383, 430, 460
Bse1I	ACTGG	2 cut(s)	213, 326
Bse8I	GATNNNNATC	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	666
BseJI	GATNNNNATC	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	155, 387
BseNI	ACTGG	2 cut(s)	213, 326
BseRI	GAGGAG	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	86, 649
BseYI	CCCAGC	2 cut(s)	131, 253
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	187, 368
BshNI	GGYRCC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	187, 368
Bso31I	GGTCTC	1 cut(s)	589
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	394, 427, 478, 514
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	3 cut(s)	278, 608, 624
BspANI	GGCC	2 cut(s)	187, 368
BspCNI	CTCAG	2 cut(s)	156, 386
BspEI	TCCGGA	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	113, 768
BspPI	GGATC	2 cut(s)	435, 473
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	213, 326
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	4 cut(s)	394, 427, 478, 514
BssNI	GRCGYC	1 cut(s)	112
BssT1I	CCWWGG	1 cut(s)	666
Bst4CI	ACNGT	2 cut(s)	511, 555
Bst6I	CTCTTC	2 cut(s)	146, 216
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	164, 373
BstDSI	CCRYGG	1 cut(s)	666
BstFNI	CGCG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	4 cut(s)	397, 430, 481, 517
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	4 cut(s)	394, 427, 478, 514
BstMWI	GCNNNNNNNGC	6 cut(s)	169, 278, 458, 491, 620, 659
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	86, 649
BstXI	CCANNNNNNTGG	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	792
BsuRI	GGCC	2 cut(s)	187, 368
BtgI	CCRYGG	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	220, 319
Cac8I	GCNNGC	1 cut(s)	161
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	1 cut(s)	114
Csp6I	GTAC	3 cut(s)	45, 413, 808
CspCI	CAANNNNNGTGG	2 cut(s)	724, 759
CviAII	CATG	5 cut(s)	48, 401, 592, 667, 819
CviQI	GTAC	3 cut(s)	45, 413, 808
DdeI	CTNAG	2 cut(s)	164, 373
DinI	GGCGCC	1 cut(s)	113
DpnI	GATC	4 cut(s)	396, 429, 480, 516
DpnII	GATC	4 cut(s)	394, 427, 478, 514
Eam1104I	CTCTTC	2 cut(s)	146, 216
EarI	CTCTTC	2 cut(s)	146, 216
Eco130I	CCWWGG	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	589
Eco57I	CTGAAG	2 cut(s)	272, 642
EcoT14I	CCWWGG	1 cut(s)	666
EgeI	GGCGCC	1 cut(s)	113
EheI	GGCGCC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	666
FaeI	CATG	5 cut(s)	51, 404, 595, 670, 822
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	5 cut(s)	47, 400, 591, 666, 818
FbaI	TGATCA	2 cut(s)	394, 514
Fnu4HI	GCNGC	4 cut(s)	100, 279, 624, 663
Fsp4HI	GCNGC	4 cut(s)	100, 279, 624, 663
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	100, 279, 624, 663
GsaI	CCCAGC	2 cut(s)	135, 257
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	187, 368
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	5 cut(s)	51, 404, 595, 670, 822
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	52, 316
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	239, 427
Hpy188III	TCNNGA	7 cut(s)	56, 196, 245, 337, 401, 539, 703
HpyAV	CCTTC	1 cut(s)	579
HpyCH4III	ACNGT	2 cut(s)	511, 555
HpyCH4V	TGCA	4 cut(s)	159, 467, 500, 614
HpyF10VI	GCNNNNNNNGC	6 cut(s)	169, 278, 458, 491, 620, 659
HpyF3I	CTNAG	2 cut(s)	164, 373
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	5 cut(s)	51, 404, 595, 670, 822
HspAI	GCGC	1 cut(s)	112
KasI	GGCGCC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	394, 514
Kzo9I	GATC	4 cut(s)	394, 427, 478, 514
LmnI	GCTCC	3 cut(s)	451, 766, 812
Lsp1109I	GCAGC	2 cut(s)	86, 649
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	396, 429, 480, 516
MboI	GATC	4 cut(s)	394, 427, 478, 514
MboII	GAAGA	7 cut(s)	49, 74, 163, 230, 233, 306, 416
MfeI	CAATTG	1 cut(s)	528
MluCI	AATT	9 cut(s)	106, 175, 519, 528, 615, 675, 697, 727, 773
Mly113I	GGCGCC	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	46
MroI	TCCGGA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	2 cut(s)	312, 347
MspA1I	CMGCKG	1 cut(s)	662
MspI	CCGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	6 cut(s)	169, 278, 458, 491, 620, 659
NarI	GGCGCC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	4 cut(s)	394, 427, 478, 514
NlaIII	CATG	5 cut(s)	51, 404, 595, 670, 822
NlaIV	GGNNCC	2 cut(s)	113, 768
PagI	TCATGA	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	368
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	4 cut(s)	101, 280, 625, 664
PleI	GAGTC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	46
PspFI	CCCAGC	2 cut(s)	131, 253
PspN4I	GGNNCC	2 cut(s)	113, 768
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	3 cut(s)	46, 414, 809
RsaNI	GTAC	3 cut(s)	45, 413, 808
SaqAI	TTAA	2 cut(s)	312, 347
SatI	GCNGC	4 cut(s)	100, 279, 624, 663
Sau3AI	GATC	4 cut(s)	394, 427, 478, 514
SchI	GAGTC	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	181, 335
SmoI	CTYRAG	2 cut(s)	181, 335
Sse9I	AATT	9 cut(s)	106, 175, 519, 528, 615, 675, 697, 727, 773
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	278, 608, 624
SspDI	GGCGCC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	2 cut(s)	511, 555
TaqI	TCGA	1 cut(s)	575
TasI	AATT	9 cut(s)	106, 175, 519, 528, 615, 675, 697, 727, 773
TauI	GCSGC	2 cut(s)	281, 626
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	2 cut(s)	312, 347
Tru9I	TTAA	2 cut(s)	312, 347
TscAI	CASTG	2 cut(s)	220, 326
TseI	GCWGC	2 cut(s)	99, 662
TspDTI	ATGAA	5 cut(s)	39, 50, 368, 417, 561
TspRI	CASTG	2 cut(s)	220, 326
XapI	RAATTY	2 cut(s)	519, 773
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.