AT5G15100

May act as a component of the auxin efflux carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016676
Physical Location & Seq
Reverse (-)
4892016 .. 4894113
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15100.1

Sequence Viewer

Length: 1104 bp
ATGATCTCCTGGCTCGATATCTACCATGTTGTTTCAGCAACTGTTCCTCTCTATGTCTCAATGACATTAGGTTTCCTCTCTGCAAGACATCTAAAGCTCTTCTCACCCGAACAATGCGCAGGCATCAACAAATTCGTGGCCAAATTCTCCATCCCTTTGCTTTCTTTTCAAATAATCTCTGAAAACAACCCCTTCAAGATGAGCCCTAAACTCATTCTCTCTGATATTCTCCAGAAATTCTTAGTCGTTGTTGTATTAGCCATGGTTTTAAGATTCTGGCATCCAACAGGAGGAAGAGGAGGAAAATTGGGTTGGGTCATAACCGGATTATCTATATCGGTGTTGCCAAATACTCTCATTCTTGGAATGCCAATCTTGAGTGCCATCTATGGAGATGAAGCTGCGAGCATCTTGGAGCAGATTGTTGTCTTGCAAAGCTTGATTTGGTACACCATCTTGCTCTTTTTGTTCGAGCTTAACGCCGCAAGGGCGTTACCATCTTCTGGAGCTTCCCTAGAACATACAGGCAATGACCAGGAAGAGGCTAATATAGAGGACGAGCCAAAAGAAGAAGAGGACGAAGAAGAAGTAGCAATAGTGAGAACAAGATCTGTTGGAACTATGAAGATTCTATTGAAGGCTTGGAGAAAGCTTATAATCAATCCAAATACATACGCAACATTGATCGGAATCATTTGGGCTACTTTACATTTCAGATTGGGATGGAATTTGCCTGAGATGATTGATAAATCAATACATTTATTATCTGATGGAGGCTTAGGAATGGCCATGTTCAGCTTAGGTCTGTTCATGGCATCACAAAGTAGTATCATAGCATGTGGTACAAAAATGGCGATTATAACAATGCTGCTCAAGTTCGTATTAGGACCTGCTCTTATGATTGCTTCTGCGTATTGCATCAGATTAAAAAGTACTCTCTTCAAAGTAGCAATATTACAGGCAGCATTGCCTCAAGGAGTAGTGCCATTTGTTTTTGCAAAAGAGTATAATCTTCACCCGGAGATCATTAGTACTGGGGTGATATTTGGAATGCTAATTGCCTTACCAACAACTTTGGCATATTATTTTCTATTGGACCTATGA

Protein Analysis

367

Amino Acids

40.5

Weight (kDa)

6.39

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 9 - 362 7.1e-82 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016676)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15100
fragaria_vesca FvH4_6g49240
malus_domestica MD09G1047300.v1.1
prunus_persica Prupe.3G271700_v2.0.a1
pyrus_communis pycom111g03810
rosa_chinensis RchiOBHm_Chr2g0169101
rosa_laevigata RLG00000021834
rosa_roxburghii Rroxscaffold_2G00082450
rosa_rugosa Rorug02G0536900
rosa_samantha Rh2AG608800 Rh2BG621700 Rh2CG590400 Rh2DG632300
rosa_wichuraiana Rw2G050480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 656, 860
Acc16I TGCGCA 1 cut(s) 118
Acc36I ACCTGC 1 cut(s) 898
AccB7I CCANNNNNTGG 1 cut(s) 503
AciI CCGC 1 cut(s) 483
AcoI YGGCCR 2 cut(s) 138, 786
AcsI RAATTY 4 cut(s) 131, 143, 236, 727
AfaI GTAC 4 cut(s) 449, 844, 934, 1033
AfiI CCNNNNNNNGG 3 cut(s) 290, 503, 541
AgsI TTSAA 4 cut(s) 170, 196, 637, 943
AjnI CCWGG 2 cut(s) 8, 534
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 7 cut(s) 97, 401, 438, 475, 509, 652, 798
AluI AGCT 7 cut(s) 97, 401, 438, 475, 509, 652, 798
Alw26I GTCTC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 2 cut(s) 138, 786
ApeKI GCWGC 3 cut(s) 401, 868, 962
ApoI RAATTY 4 cut(s) 131, 143, 236, 727
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 887, 1096
AsuC2I CCSGG 1 cut(s) 1019
AsuHPI GGTGA 3 cut(s) 96, 1007, 1051
AvaII GGWCC 2 cut(s) 887, 1096
BalI TGGCCA 2 cut(s) 140, 788
BanII GRGCYC 1 cut(s) 206
BbvI GCAGC 3 cut(s) 388, 855, 974
BccI CCATC 6 cut(s) 158, 392, 461, 505, 717, 764
BciT130I CCWGG 2 cut(s) 10, 536
BcnI CCSGG 1 cut(s) 1019
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 898
BglI GCCNNNNNGGC 1 cut(s) 488
BglII AGATCT 1 cut(s) 608
BisI GCNGC 4 cut(s) 402, 483, 869, 963
BlsI GCNGC 4 cut(s) 403, 484, 870, 964
BmcAI AGTACT 2 cut(s) 934, 1033
Bme1390I CCNGG 3 cut(s) 10, 536, 1019
Bme18I GGWCC 2 cut(s) 887, 1096
BmgT120I GGNCC 2 cut(s) 887, 1096
BmrFI CCNGG 3 cut(s) 10, 536, 1019
BmrI ACTGGG 1 cut(s) 1044
BmsI GCATC 5 cut(s) 132, 289, 417, 824, 927
BmuI ACTGGG 1 cut(s) 1044
BpmI CTGGAG 2 cut(s) 215, 525
Bpu10I CCTNAGC 2 cut(s) 778, 799
BpuEI CTTGAG 3 cut(s) 397, 857, 957
BpuMI CCSGG 1 cut(s) 1019
BsaBI GATNNNNATC 1 cut(s) 689
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 503, 541
Bse1I ACTGG 1 cut(s) 1039
Bse3DI GCAATG 2 cut(s) 535, 965
Bse8I GATNNNNATC 1 cut(s) 689
BseBI CCWGG 2 cut(s) 10, 536
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 3 cut(s) 150, 280, 728
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 3 cut(s) 290, 503, 541
BseMI GCAATG 2 cut(s) 535, 965
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 1 cut(s) 1039
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 3 cut(s) 388, 855, 974
BshFI GGCC 2 cut(s) 140, 788
BsiSI CCGG 2 cut(s) 324, 1019
BslI CCNNNNNNNGG 3 cut(s) 290, 503, 541
BsmAI GTCTC 1 cut(s) 61
BsmI GAATGC 2 cut(s) 372, 1056
BsnI GGCC 2 cut(s) 140, 788
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 4 cut(s) 3, 608, 684, 1023
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 483
BspANI GGCC 2 cut(s) 140, 788
BspCNI CTCAG 1 cut(s) 727
BspMI ACCTGC 1 cut(s) 898
BspQI GCTCTTC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 535, 965
BsrI ACTGG 1 cut(s) 1039
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 4 cut(s) 3, 608, 684, 1023
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 2 cut(s) 10, 536
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 5 cut(s) 104, 289, 534, 567, 944
BstC8I GCNNGC 2 cut(s) 121, 406
BstDEI CTNAG 4 cut(s) 241, 735, 778, 799
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 150, 280, 728
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 4 cut(s) 6, 611, 687, 1026
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 4 cut(s) 3, 608, 684, 1023
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 2 cut(s) 10, 536
BstNSI RCATGY 1 cut(s) 840
BstSCI CCNGG 3 cut(s) 8, 534, 1017
BstV1I GCAGC 3 cut(s) 388, 855, 974
BstX2I RGATCY 1 cut(s) 608
BstYI RGATCY 1 cut(s) 608
BsuRI GGCC 2 cut(s) 140, 788
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 3 cut(s) 150, 280, 728
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 2 cut(s) 121, 406
CaiI CAGNNNCTG 1 cut(s) 41
CfoI GCGC 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 887, 1096
Csp6I GTAC 4 cut(s) 448, 843, 933, 1032
CviAII CATG 5 cut(s) 26, 262, 790, 811, 837
CviQI GTAC 4 cut(s) 448, 843, 933, 1032
DdeI CTNAG 4 cut(s) 241, 735, 778, 799
DpnI GATC 4 cut(s) 5, 610, 686, 1025
DpnII GATC 4 cut(s) 3, 608, 684, 1023
EaeI YGGCCR 2 cut(s) 138, 786
Eam1104I CTCTTC 5 cut(s) 104, 289, 534, 567, 944
EarI CTCTTC 5 cut(s) 104, 289, 534, 567, 944
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 887, 1096
EcoO109I RGGNCCY 1 cut(s) 887
EcoRII CCWGG 2 cut(s) 8, 534
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 5 cut(s) 29, 265, 793, 814, 840
FatI CATG 5 cut(s) 25, 261, 789, 810, 836
Fnu4HI GCNGC 4 cut(s) 402, 483, 869, 963
FokI GGATG 3 cut(s) 137, 267, 735
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 402, 483, 869, 963
FspBI CTAG 1 cut(s) 515
FspI TGCGCA 1 cut(s) 118
GlaI GCGC 1 cut(s) 118
GluI GCNGC 4 cut(s) 402, 483, 869, 963
GsuI CTGGAG 2 cut(s) 215, 525
HaeIII GGCC 2 cut(s) 140, 788
HapII CCGG 2 cut(s) 324, 1019
HhaI GCGC 1 cut(s) 119
Hin1II CATG 5 cut(s) 29, 265, 793, 814, 840
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HindIII AAGCTT 2 cut(s) 436, 650
HinfI GANTC 3 cut(s) 273, 628, 690
HpaII CCGG 2 cut(s) 324, 1019
HphI GGTGA 3 cut(s) 96, 1007, 1051
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 6 cut(s) 181, 223, 689, 716, 769, 923
Hpy188III TCNNGA 4 cut(s) 196, 232, 376, 504
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 2 cut(s) 202, 631
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 83, 433, 918, 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 4 cut(s) 241, 735, 778, 799
Hsp92II CATG 5 cut(s) 29, 265, 793, 814, 840
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 4 cut(s) 3, 608, 684, 1023
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 415, 506
Lsp1109I GCAGC 3 cut(s) 388, 855, 974
LweI GCATC 5 cut(s) 132, 289, 417, 824, 927
MaeI CTAG 1 cut(s) 515
MaeIII GTNAC 1 cut(s) 492
MalI GATC 4 cut(s) 5, 610, 686, 1025
MboI GATC 4 cut(s) 3, 608, 684, 1023
MflI RGATCY 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 206
MlsI TGGCCA 2 cut(s) 140, 788
MluCI AATT 6 cut(s) 131, 143, 236, 305, 727, 1056
MluNI TGGCCA 2 cut(s) 140, 788
MmeI TCCRAC 2 cut(s) 308, 595
Mox20I TGGCCA 2 cut(s) 140, 788
MscI TGGCCA 2 cut(s) 140, 788
MseI TTAA 3 cut(s) 269, 477, 926
Msp20I TGGCCA 2 cut(s) 140, 788
MspI CCGG 2 cut(s) 324, 1019
MspR9I CCNGG 3 cut(s) 10, 536, 1019
Mva1269I GAATGC 2 cut(s) 372, 1056
MvaI CCWGG 2 cut(s) 10, 536
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 1019
NcoI CCATGG 1 cut(s) 261
NdeII GATC 4 cut(s) 3, 608, 684, 1023
NlaIII CATG 5 cut(s) 29, 265, 793, 814, 840
NsbI TGCGCA 1 cut(s) 118
NspI RCATGY 1 cut(s) 840
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 2 cut(s) 372, 1056
PfeI GAWTC 3 cut(s) 273, 628, 690
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 4 cut(s) 403, 484, 870, 964
PpuMI RGGWCCY 1 cut(s) 887
PsiI TTATAA 2 cut(s) 656, 860
Psp5II RGGWCCY 1 cut(s) 887
Psp6I CCWGG 2 cut(s) 8, 534
PspGI CCWGG 2 cut(s) 8, 534
PspPI GGNCC 2 cut(s) 887, 1096
PspPPI RGGWCCY 1 cut(s) 887
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 608
RsaI GTAC 4 cut(s) 449, 844, 934, 1033
RsaNI GTAC 4 cut(s) 448, 843, 933, 1032
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 269, 477, 926
SatI GCNGC 4 cut(s) 402, 483, 869, 963
Sau3AI GATC 4 cut(s) 3, 608, 684, 1023
Sau96I GGNCC 2 cut(s) 887, 1096
ScaI AGTACT 2 cut(s) 934, 1033
ScrFI CCNGG 3 cut(s) 10, 536, 1019
SduI GDGCHC 1 cut(s) 206
SfaNI GCATC 5 cut(s) 132, 289, 417, 824, 927
SinI GGWCC 2 cut(s) 887, 1096
SmlI CTYRAG 3 cut(s) 376, 872, 972
SmoI CTYRAG 3 cut(s) 376, 872, 972
Sse9I AATT 6 cut(s) 131, 143, 236, 305, 727, 1056
SsiI CCGC 1 cut(s) 483
SspI AATATT 1 cut(s) 954
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 3 cut(s) 8, 534, 1017
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 2 cut(s) 15, 471
TasI AATT 6 cut(s) 131, 143, 236, 305, 727, 1056
TatI WGTACW 2 cut(s) 932, 1031
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 3 cut(s) 273, 628, 690
Tru1I TTAA 3 cut(s) 269, 477, 926
Tru9I TTAA 3 cut(s) 269, 477, 926
TseI GCWGC 3 cut(s) 401, 868, 962
TspDTI ATGAA 3 cut(s) 411, 638, 799
Van91I CCANNNNNTGG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 887, 1096
XapI RAATTY 4 cut(s) 131, 143, 236, 727
XceI RCATGY 1 cut(s) 840
XspI CTAG 1 cut(s) 515
ZrmI AGTACT 2 cut(s) 934, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.