Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016676

Physical Location & Seq

Genomic Coordinates Forward (+)

78701477 .. 78703336

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATTTCCCTAATTGATGTCTACCATGTTGTGGCAGCAACTGTTCCTTTGTATGTTGCTATGGGTTTAGCGTATGTTTCTGTGAAATGGTGGAAGCTTTTCACACCAGAACAATGTTCTGGCATAAACAAGTTTGTCGCGAAATTCTCAATCCCATTGCTGTCATTTCAAGTGATTTCTGCCAATAACCCCTACAAAATGAACCTCAAGCTCATTCTCTCGGATGGTCTACAAAAGGCAATTGTTTTCTTGGCACTGACAGCAATCACTAAATTCAGCTCCCATGGTGGCTTGAATTCCATCATCACAGGTCTTTCTCTCTCCACCTTGCCCAACACATTGATCCTTGGAATTCCACTTTTGAAGGCCATGTATGGTGAAGAAGCAGGCGCGCTTGTTAGTCAGATAGTTGTCTTACAAAGCTTAGTTTGGTACAATCTGTTGCTGTTTCTGTTCGAGTTTGGAGCAGCAAAGGCAGCTTCTGTGACACCTTCATCAGAAGCAACTGCAGAGATGGAGGCCCCTAATGAAGCACAATCGAAAGACGAAGCAGAGGATGAAGAAAGAACCAGAAATCCCAAGAAAATGAAATCTATTCTATTGACAGTTGGGAGGAAGCTTTTCGCCAACCCCAACACTCATGCAACAATGTTGAGTCTAATTTGGGCTGGCATACACTTCAGATGGGGAGTGAAAATGCCAGAAATTGTTACGCAATCAATTTCGATACTGGCAAATGGAGGACTTGGTATGGCAACATTCAGCTTAGGCCTTTTCATGGCGTCGCGGCCTAGTATAATAGCTTGCGGAACACGAATGACAGCGGTAGCCATGGGACTTAAGTTCATTGCTGGACCTGCTGTAATGGCACTGTCTTCCTTTGCAATAGGACTAAGAGGCAGAGCTCTGAGAATAGCAATTGTGCAGGCAGCTCTTCCTCAAGGAATTGTTCCTTTTGTTTTTGCCAAGGAATATAATGTGCATCCAGAAATTCTAAGCACCGCAGTAATTTTTGGCATGCTCATTGCTTTGCCTATAGCATTGGCCTACTACTTCCTACTGGGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

357

Amino Acids

38.39

Weight (kDa)

9.41

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	9 - 351	5.3e-90	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15100
fragaria_vesca	FvH4_6g49240
malus_domestica	MD09G1047300.v1.1
prunus_persica	Prupe.3G271700_v2.0.a1
pyrus_communis	pycom111g03810
rosa_chinensis	RchiOBHm_Chr2g0169101
rosa_laevigata	RLG00000021834
rosa_roxburghii	Rroxscaffold_2G00082450
rosa_rugosa	Rorug02G0536900
rosa_samantha	Rh2AG608800 Rh2BG621700 Rh2CG590400 Rh2DG632300
rosa_wichuraiana	Rw2G050480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1069
Acc36I	ACCTGC	1 cut(s)	865
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccI	GTMKAC	2 cut(s)	21, 229
AccII	CGCG	3 cut(s)	140, 392, 787
AciI	CCGC	4 cut(s)	787, 807, 824, 1002
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	5 cut(s)	143, 272, 295, 351, 990
AcuI	CTGAAG	1 cut(s)	664
AcyI	GRCGYC	1 cut(s)	782
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	31, 778
AflII	CTTAAG	1 cut(s)	839
AgsI	TTSAA	3 cut(s)	170, 295, 364
AloI	GAACNNNNNNTCC	2 cut(s)	559, 591
Alw21I	GWGCWC	1 cut(s)	907
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	2 cut(s)	41, 482
AoxI	GGCC	5 cut(s)	366, 519, 769, 788, 1044
ApeKI	GCWGC	4 cut(s)	35, 467, 476, 929
ApoI	RAATTY	5 cut(s)	143, 272, 295, 351, 990
Asp700I	GAANNNNTTC	2 cut(s)	98, 620
AspLEI	GCGC	2 cut(s)	392, 394
AspS9I	GGNCC	2 cut(s)	520, 854
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	907
BbsI	GAAGAC	1 cut(s)	867
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	4 cut(s)	47, 479, 488, 941
BccI	CCATC	4 cut(s)	218, 308, 508, 678
BfaI	CTAG	1 cut(s)	792
BfmI	CTRYAG	2 cut(s)	507, 1035
BfrI	CTTAAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	865
BisI	GCNGC	5 cut(s)	36, 468, 477, 788, 930
BlsI	GCNGC	5 cut(s)	37, 469, 478, 789, 931
Bme18I	GGWCC	1 cut(s)	854
BmgT120I	GGNCC	2 cut(s)	520, 854
BmiI	GGNNCC	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	1070
BmsI	GCATC	1 cut(s)	991
BmuI	ACTGGG	1 cut(s)	1070
BpiI	GAAGAC	1 cut(s)	867
Bpu10I	CCTNAGC	1 cut(s)	766
BpuEI	CTTGAG	2 cut(s)	191, 924
BsaHI	GRCGYC	1 cut(s)	782
BsaJI	CCNNGG	4 cut(s)	283, 346, 831, 966
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 778
Bse1I	ACTGG	2 cut(s)	735, 1065
Bse3DI	GCAATG	3 cut(s)	155, 846, 1023
BseDI	CCNNGG	4 cut(s)	283, 346, 831, 966
BseGI	GGATG	3 cut(s)	229, 562, 982
BseLI	CCNNNNNNNGG	2 cut(s)	31, 778
BseMI	GCAATG	3 cut(s)	155, 846, 1023
BseMII	CTCAG	1 cut(s)	899
BseNI	ACTGG	2 cut(s)	735, 1065
BsePI	GCGCGC	1 cut(s)	390
BseXI	GCAGC	4 cut(s)	47, 479, 488, 941
BsgI	GTGCAG	1 cut(s)	944
Bsh1236I	CGCG	3 cut(s)	140, 392, 787
BshFI	GGCC	5 cut(s)	368, 521, 771, 790, 1046
BsiHKAI	GWGCWC	1 cut(s)	907
BslFI	GGGAC	1 cut(s)	849
BslI	CCNNNNNNNGG	2 cut(s)	31, 778
BsmFI	GGGAC	1 cut(s)	849
BsnI	GGCC	5 cut(s)	368, 521, 771, 790, 1046
Bsp1286I	GDGCHC	1 cut(s)	907
Bsp143I	GATC	1 cut(s)	342
Bsp19I	CCATGG	2 cut(s)	283, 831
Bsp68I	TCGCGA	1 cut(s)	140
BspACI	CCGC	4 cut(s)	787, 807, 824, 1002
BspANI	GGCC	5 cut(s)	368, 521, 771, 790, 1046
BspCNI	CTCAG	1 cut(s)	900
BspFNI	CGCG	3 cut(s)	140, 392, 787
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	865
BspPI	GGATC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	939
BspTI	CTTAAG	1 cut(s)	839
BsrDI	GCAATG	3 cut(s)	155, 846, 1023
BsrI	ACTGG	2 cut(s)	735, 1065
BssECI	CCNNGG	4 cut(s)	283, 346, 831, 966
BssHII	GCGCGC	1 cut(s)	390
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	782
BssT1I	CCWWGG	4 cut(s)	283, 346, 831, 966
Bst4CI	ACNGT	3 cut(s)	43, 607, 873
Bst6I	CTCTTC	1 cut(s)	939
BstACI	GRCGYC	1 cut(s)	782
BstAFI	CTTAAG	1 cut(s)	839
BstC8I	GCNNGC	6 cut(s)	388, 392, 670, 805, 927, 1019
BstDEI	CTNAG	5 cut(s)	424, 766, 893, 908, 995
BstDSI	CCRYGG	2 cut(s)	283, 831
BstF5I	GGATG	3 cut(s)	229, 562, 982
BstFNI	CGCG	3 cut(s)	140, 392, 787
BstHHI	GCGC	2 cut(s)	392, 394
BstKTI	GATC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 473, 476, 857, 866
BstNSI	RCATGY	1 cut(s)	1021
BstSFI	CTRYAG	2 cut(s)	507, 1035
BstUI	CGCG	3 cut(s)	140, 392, 787
BstV1I	GCAGC	4 cut(s)	47, 479, 488, 941
BstV2I	GAAGAC	1 cut(s)	867
BsuRI	GGCC	5 cut(s)	368, 521, 771, 790, 1046
BtgI	CCRYGG	2 cut(s)	283, 831
BtsCI	GGATG	3 cut(s)	229, 562, 982
BtsIMutI	CAGTG	2 cut(s)	254, 869
BtuMI	TCGCGA	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	6 cut(s)	388, 392, 670, 805, 927, 1019
CaiI	CAGNNNCTG	2 cut(s)	41, 482
CfoI	GCGC	2 cut(s)	392, 394
Cfr13I	GGNCC	2 cut(s)	520, 854
CseI	GACGC	1 cut(s)	771
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	7 cut(s)	26, 284, 370, 641, 778, 832, 1018
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	5 cut(s)	424, 766, 893, 908, 995
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
Ecl136II	GAGCTC	1 cut(s)	905
Eco130I	CCWWGG	4 cut(s)	283, 346, 831, 966
Eco147I	AGGCCT	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	907
Eco47I	GGWCC	1 cut(s)	854
Eco53kI	GAGCTC	1 cut(s)	905
Eco57I	CTGAAG	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	905
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRI	GAATTC	2 cut(s)	295, 351
EcoT14I	CCWWGG	4 cut(s)	283, 346, 831, 966
EcoT38I	GRGCYC	1 cut(s)	907
ErhI	CCWWGG	4 cut(s)	283, 346, 831, 966
FaeI	CATG	7 cut(s)	29, 287, 373, 644, 781, 835, 1021
FaqI	GGGAC	1 cut(s)	849
FatI	CATG	7 cut(s)	25, 283, 369, 640, 777, 831, 1017
FblI	GTMKAC	2 cut(s)	21, 229
Fnu4HI	GCNGC	5 cut(s)	36, 468, 477, 788, 930
FokI	GGATG	3 cut(s)	236, 569, 969
FriOI	GRGCYC	1 cut(s)	907
Fsp4HI	GCNGC	5 cut(s)	36, 468, 477, 788, 930
FspBI	CTAG	1 cut(s)	792
GlaI	GCGC	2 cut(s)	391, 393
GluI	GCNGC	5 cut(s)	36, 468, 477, 788, 930
HaeIII	GGCC	5 cut(s)	368, 521, 771, 790, 1046
HgaI	GACGC	1 cut(s)	771
HhaI	GCGC	2 cut(s)	392, 394
Hin1I	GRCGYC	1 cut(s)	782
Hin1II	CATG	7 cut(s)	29, 287, 373, 644, 781, 835, 1021
Hin6I	GCGC	2 cut(s)	390, 392
HinP1I	GCGC	2 cut(s)	390, 392
HindIII	AAGCTT	3 cut(s)	95, 421, 617
HinfI	GANTC	1 cut(s)	655
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	22, 230
Hpy188I	TCNGA	5 cut(s)	223, 405, 499, 683, 909
Hpy188III	TCNNGA	2 cut(s)	139, 986
Hpy8I	GTNNAC	2 cut(s)	22, 230
Hpy99I	CGWCG	1 cut(s)	787
HpyAV	CCTTC	2 cut(s)	358, 501
HpyCH4III	ACNGT	3 cut(s)	43, 607, 873
HpyCH4V	TGCA	5 cut(s)	509, 644, 884, 925, 982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 473, 476, 857, 866
HpyF3I	CTNAG	5 cut(s)	424, 766, 893, 908, 995
Hsp92I	GRCGYC	1 cut(s)	782
Hsp92II	CATG	7 cut(s)	29, 287, 373, 644, 781, 835, 1021
HspAI	GCGC	2 cut(s)	390, 392
Kzo9I	GATC	1 cut(s)	342
LguI	GCTCTTC	1 cut(s)	939
LmnI	GCTCC	2 cut(s)	284, 464
Lsp1109I	GCAGC	4 cut(s)	47, 479, 488, 941
LweI	GCATC	1 cut(s)	991
MaeI	CTAG	1 cut(s)	792
MaeIII	GTNAC	2 cut(s)	484, 709
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	4 cut(s)	392, 572, 867, 926
MfeI	CAATTG	2 cut(s)	240, 918
MhlI	GDGCHC	1 cut(s)	907
MlyI	GAGTC	1 cut(s)	664
MnlI	CCTC	7 cut(s)	215, 511, 547, 606, 734, 890, 948
MroXI	GAANNNNTTC	2 cut(s)	98, 620
MseI	TTAA	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	824
MspCI	CTTAAG	1 cut(s)	839
MunI	CAATTG	2 cut(s)	240, 918
MvnI	CGCG	3 cut(s)	140, 392, 787
MwoI	GCNNNNNNNGC	5 cut(s)	260, 473, 476, 857, 866
NcoI	CCATGG	2 cut(s)	283, 831
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	7 cut(s)	29, 287, 373, 644, 781, 835, 1021
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	484
NruI	TCGCGA	1 cut(s)	140
NspI	RCATGY	1 cut(s)	1021
PaeI	GCATGC	1 cut(s)	1021
PauI	GCGCGC	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	939
PdmI	GAANNNNTTC	2 cut(s)	98, 620
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	37, 469, 478, 789, 931
PleI	GAGTC	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	663
PsiI	TTATAA	1 cut(s)	1069
Psp124BI	GAGCTC	1 cut(s)	907
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	520, 854
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	2 cut(s)	41, 482
PteI	GCGCGC	1 cut(s)	390
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	907
SapI	GCTCTTC	1 cut(s)	939
SaqAI	TTAA	1 cut(s)	840
SatI	GCNGC	5 cut(s)	36, 468, 477, 788, 930
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	2 cut(s)	520, 854
SchI	GAGTC	1 cut(s)	664
SduI	GDGCHC	1 cut(s)	907
SfaNI	GCATC	1 cut(s)	991
SfcI	CTRYAG	2 cut(s)	507, 1035
SinI	GGWCC	1 cut(s)	854
SmlI	CTYRAG	3 cut(s)	206, 839, 939
SmoI	CTYRAG	3 cut(s)	206, 839, 939
SphI	GCATGC	1 cut(s)	1021
SseBI	AGGCCT	1 cut(s)	771
SsiI	CCGC	4 cut(s)	787, 807, 824, 1002
SspMI	CTAG	1 cut(s)	792
SstI	GAGCTC	1 cut(s)	907
StuI	AGGCCT	1 cut(s)	771
StyI	CCWWGG	4 cut(s)	283, 346, 831, 966
TaaI	ACNGT	3 cut(s)	43, 607, 873
TaqI	TCGA	3 cut(s)	456, 539, 725
TauI	GCSGC	1 cut(s)	790
Tru1I	TTAA	1 cut(s)	840
Tru9I	TTAA	1 cut(s)	840
TscAI	CASTG	2 cut(s)	261, 876
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	35, 467, 476, 929
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	7 cut(s)	215, 483, 543, 573, 602, 766, 835
TspRI	CASTG	2 cut(s)	261, 876
Van91I	CCANNNNNTGG	1 cut(s)	31
Vha464I	CTTAAG	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	854
XapI	RAATTY	5 cut(s)	143, 272, 295, 351, 990
XceI	RCATGY	1 cut(s)	1021
XmiI	GTMKAC	2 cut(s)	21, 229
XmnI	GAANNNNTTC	2 cut(s)	98, 620
XspI	CTAG	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.