Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0016676

Physical Location & Seq

Genomic Coordinates Reverse (-)

2313833 .. 2315515

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03810.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATTTCTCTAACAGATGTCTACCATGTTGTGGCAGCCACTGTTCCTCTATATGTTGCCATGATTTTGGCCTACCTCTCTGTGAAATGGTGGAAGCTCTTCACGCCAGATCAATGCTCTGGAATTAACAAATTTGTTGCCAAATTCTCAATCCCTCTTCTGTCCTTTCAAATCATTTCTTCCAACGACCCTTACAAAATGAACCATAAACTCATCCTCGCGGACTGCCTCCAAAAACTGACTGCATTCCTGGCACTGGCAGCAGTCACTAAATTCAGTTCCTATGGCGGGTTGAATTCCATCATAACCGGCCTCTCTCTTTCGACGCTTCCTAACACGTTGATCCTCGGGATTCCGCTGCTGAAGGCCATGTACGGGGATGAGGCGGCCAAGCTTGTGACACAGATAGTTGTGTTGCAGAGCTTAATCTGGTACAATATGCTGCTGTTTCTGTTCGAGTTCAGGGCCGCTAAGGCGGCGTCTGTCACACCTTCATCGGAACCCACTGCAGATGAGACGGAGGACGAAACGAGAGCCAACAATACCAAGAAGATCAAATCTATTCTGTTAACAGTTGGGAGGAAGCTTATAACCAATCCAAACACTCATGCAACATTGTTGGGTCTGATTTGGGCAAGCATACACTACAGGTGGGAAGTGAAGCTGCCAGAAATCATTGCGCAATCAATCGCGATACTGTCGAATGGAGGACTTGGGATGGCAATGTTCGGCTTAGGCCTTTTTATGGCATCGCGCGGTAGCATAATAGCGTGTGGGACACGAAAGGCGATGATAGCCATGGGATTGAAGTTCATAGCCGGCCCTGCGATAATGGCGGTGTCCTCCTTTGCAGTTGGACTAAGGGGCAGAGTTCTCAGAGTGGCAGTAGTGCAGGCAACTCTTCCTCAAGGAATCGTTCCTTTCGTGTTTGCGAAAGAATACAATGTACATCCAGACATTTTGAGCACCGGGGTTATTTTTGGGATGCTCATTGCATTGCCAATAGCATTGGCCTACTACTTCCTTCTGGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

346

Amino Acids

37.45

Weight (kDa)

9.53

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15100
fragaria_vesca	FvH4_6g49240
malus_domestica	MD09G1047300.v1.1
prunus_persica	Prupe.3G271700_v2.0.a1
pyrus_communis	pycom111g03810
rosa_chinensis	RchiOBHm_Chr2g0169101
rosa_laevigata	RLG00000021834
rosa_roxburghii	Rroxscaffold_2G00082450
rosa_rugosa	Rorug02G0536900
rosa_samantha	Rh2AG608800 Rh2BG621700 Rh2CG590400 Rh2DG632300
rosa_wichuraiana	Rw2G050480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
Acc16I	TGCGCA	1 cut(s)	681
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	4 cut(s)	221, 692, 754, 756
AciI	CCGC	8 cut(s)	221, 288, 356, 386, 468, 476, 756, 836
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	4 cut(s)	131, 143, 272, 295
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	3 cut(s)	374, 434, 948
AfiI	CCNNNNNNNGG	5 cut(s)	31, 256, 288, 375, 745
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	3 cut(s)	170, 295, 808
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	5 cut(s)	97, 394, 423, 586, 664
AluI	AGCT	5 cut(s)	97, 394, 423, 586, 664
Alw21I	GWGCWC	1 cut(s)	968
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	8 cut(s)	69, 310, 366, 387, 465, 736, 820, 1011
ApeKI	GCWGC	5 cut(s)	35, 260, 358, 442, 664
ApoI	RAATTY	4 cut(s)	131, 143, 272, 295
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	2 cut(s)	682, 756
AspS9I	GGNCC	2 cut(s)	465, 821
AsuC2I	CCSGG	1 cut(s)	970
AvaI	CYCGRG	1 cut(s)	347
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
Bbv12I	GWGCWC	1 cut(s)	968
BbvI	GCAGC	5 cut(s)	47, 272, 345, 429, 651
BccI	CCATC	2 cut(s)	308, 712
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	970
BcoDI	GTCTC	1 cut(s)	509
BfmI	CTRYAG	2 cut(s)	507, 646
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	8 cut(s)	36, 261, 359, 387, 443, 468, 477, 665
BlsI	GCNGC	8 cut(s)	37, 262, 360, 388, 444, 469, 478, 666
Bme1390I	CCNGG	2 cut(s)	251, 970
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	465, 821
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	2 cut(s)	251, 970
BmsI	GCATC	2 cut(s)	758, 975
Bpu10I	CCTNAGC	2 cut(s)	471, 733
BpuEI	CTTGAG	1 cut(s)	891
BpuMI	CCSGG	1 cut(s)	970
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	346, 798, 969
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 256, 288, 375, 745
Bse118I	RCCGGY	2 cut(s)	308, 818
Bse1I	ACTGG	1 cut(s)	261
Bse3DI	GCAATG	4 cut(s)	675, 729, 990, 995
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	346, 798, 969
BseGI	GGATG	5 cut(s)	213, 385, 723, 949, 990
BseLI	CCNNNNNNNGG	5 cut(s)	31, 256, 288, 375, 745
BseMI	GCAATG	4 cut(s)	675, 729, 990, 995
BseMII	CTCAG	1 cut(s)	889
BseNI	ACTGG	1 cut(s)	261
BseXI	GCAGC	5 cut(s)	47, 272, 345, 429, 651
BsgI	GTGCAG	1 cut(s)	911
Bsh1236I	CGCG	4 cut(s)	221, 692, 754, 756
BshFI	GGCC	8 cut(s)	71, 312, 368, 389, 467, 738, 822, 1013
BsiHKAI	GWGCWC	1 cut(s)	968
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	309, 819, 969
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	5 cut(s)	31, 256, 288, 375, 745
BsmAI	GTCTC	1 cut(s)	509
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	790
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	8 cut(s)	71, 312, 368, 389, 467, 738, 822, 1013
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	968
Bsp1407I	TGTACA	1 cut(s)	946
Bsp143I	GATC	3 cut(s)	109, 342, 552
Bsp19I	CCATGG	1 cut(s)	798
Bsp68I	TCGCGA	1 cut(s)	692
BspACI	CCGC	8 cut(s)	221, 288, 356, 386, 468, 476, 756, 836
BspANI	GGCC	8 cut(s)	71, 312, 368, 389, 467, 738, 822, 1013
BspCNI	CTCAG	1 cut(s)	888
BspFNI	CGCG	4 cut(s)	221, 692, 754, 756
BspLI	GGNNCC	1 cut(s)	501
BspMAI	CTGCAG	1 cut(s)	511
BspPI	GGATC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	104
BsrDI	GCAATG	4 cut(s)	675, 729, 990, 995
BsrFI	RCCGGY	2 cut(s)	308, 818
BsrGI	TGTACA	1 cut(s)	946
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	2 cut(s)	308, 818
BssECI	CCNNGG	3 cut(s)	346, 798, 969
BssMI	GATC	3 cut(s)	109, 342, 552
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	798
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	43, 574, 699
Bst6I	CTCTTC	3 cut(s)	104, 162, 906
BstACI	GRCGYC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	946
BstC8I	GCNNGC	3 cut(s)	637, 820, 894
BstDEI	CTNAG	4 cut(s)	471, 733, 860, 875
BstDSI	CCRYGG	1 cut(s)	798
BstF5I	GGATG	5 cut(s)	213, 385, 723, 949, 990
BstFNI	CGCG	4 cut(s)	221, 692, 754, 756
BstHHI	GCGC	2 cut(s)	682, 756
BstKTI	GATC	3 cut(s)	112, 345, 555
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	3 cut(s)	109, 342, 552
BstMWI	GCNNNNNNNGC	8 cut(s)	103, 251, 260, 473, 476, 794, 824, 833
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	249, 968
BstSFI	CTRYAG	2 cut(s)	507, 646
BstUI	CGCG	4 cut(s)	221, 692, 754, 756
BstV1I	GCAGC	5 cut(s)	47, 272, 345, 429, 651
BstXI	CCANNNNNNTGG	1 cut(s)	67
BsuRI	GGCC	8 cut(s)	71, 312, 368, 389, 467, 738, 822, 1013
BtgI	CCRYGG	1 cut(s)	798
BtgZI	GCGATG	2 cut(s)	735, 803
BtsCI	GGATG	5 cut(s)	213, 385, 723, 949, 990
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	3 cut(s)	39, 254, 504
BtuMI	TCGCGA	1 cut(s)	692
Cac8I	GCNNGC	3 cut(s)	637, 820, 894
CaiI	CAGNNNCTG	1 cut(s)	41
CfoI	GCGC	2 cut(s)	682, 756
Cfr10I	RCCGGY	2 cut(s)	308, 818
Cfr13I	GGNCC	2 cut(s)	465, 821
CseI	GACGC	2 cut(s)	334, 468
Csp6I	GTAC	3 cut(s)	373, 433, 947
CviAII	CATG	5 cut(s)	26, 61, 370, 608, 799
CviQI	GTAC	3 cut(s)	373, 433, 947
DdeI	CTNAG	4 cut(s)	471, 733, 860, 875
DpnI	GATC	3 cut(s)	111, 344, 554
DpnII	GATC	3 cut(s)	109, 342, 552
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	3 cut(s)	104, 162, 906
EarI	CTCTTC	3 cut(s)	104, 162, 906
Eco130I	CCWWGG	1 cut(s)	798
Eco147I	AGGCCT	1 cut(s)	738
Eco57I	CTGAAG	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	798
ErhI	CCWWGG	1 cut(s)	798
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	5 cut(s)	29, 64, 373, 611, 802
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	5 cut(s)	25, 60, 369, 607, 798
FauI	CCCGC	1 cut(s)	281
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	8 cut(s)	36, 261, 359, 387, 443, 468, 477, 665
FokI	GGATG	5 cut(s)	200, 392, 730, 936, 997
Fsp4HI	GCNGC	8 cut(s)	36, 261, 359, 387, 443, 468, 477, 665
FspI	TGCGCA	1 cut(s)	681
GlaI	GCGC	2 cut(s)	681, 755
GluI	GCNGC	8 cut(s)	36, 261, 359, 387, 443, 468, 477, 665
HaeIII	GGCC	8 cut(s)	71, 312, 368, 389, 467, 738, 822, 1013
HapII	CCGG	3 cut(s)	309, 819, 969
HgaI	GACGC	2 cut(s)	334, 468
HhaI	GCGC	2 cut(s)	682, 756
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	5 cut(s)	29, 64, 373, 611, 802
Hin6I	GCGC	2 cut(s)	680, 754
HinP1I	GCGC	2 cut(s)	680, 754
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HindIII	AAGCTT	2 cut(s)	392, 584
HinfI	GANTC	2 cut(s)	352, 912
HpaI	GTTAAC	1 cut(s)	570
HpaII	CCGG	3 cut(s)	309, 819, 969
Hpy166II	GTNNAC	2 cut(s)	22, 570
Hpy188I	TCNGA	3 cut(s)	499, 627, 878
Hpy188III	TCNNGA	4 cut(s)	120, 349, 691, 953
Hpy8I	GTNNAC	2 cut(s)	22, 570
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	358, 501, 1034
HpyCH4III	ACNGT	3 cut(s)	43, 574, 699
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	7 cut(s)	245, 418, 509, 611, 851, 892, 995
HpyF10VI	GCNNNNNNNGC	8 cut(s)	103, 251, 260, 473, 476, 794, 824, 833
HpyF3I	CTNAG	4 cut(s)	471, 733, 860, 875
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	5 cut(s)	29, 64, 373, 611, 802
HspAI	GCGC	2 cut(s)	680, 754
KroI	GCCGGC	1 cut(s)	818
KroNI	GCCGGC	1 cut(s)	820
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	3 cut(s)	109, 342, 552
LguI	GCTCTTC	1 cut(s)	104
Lsp1109I	GCAGC	5 cut(s)	47, 272, 345, 429, 651
LweI	GCATC	2 cut(s)	758, 975
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	3 cut(s)	265, 397, 484
MalI	GATC	3 cut(s)	111, 344, 554
MboI	GATC	3 cut(s)	109, 342, 552
MboII	GAAGA	5 cut(s)	91, 149, 171, 562, 893
MhlI	GDGCHC	1 cut(s)	968
MluCI	AATT	5 cut(s)	123, 131, 143, 272, 295
MmeI	TCCRAC	2 cut(s)	207, 835
MroNI	GCCGGC	1 cut(s)	818
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	3 cut(s)	126, 425, 569
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	3 cut(s)	309, 819, 969
MspR9I	CCNGG	2 cut(s)	251, 970
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	251
MvnI	CGCG	4 cut(s)	221, 692, 754, 756
MwoI	GCNNNNNNNGC	8 cut(s)	103, 251, 260, 473, 476, 794, 824, 833
NaeI	GCCGGC	1 cut(s)	820
NciI	CCSGG	1 cut(s)	970
NcoI	CCATGG	1 cut(s)	798
NdeII	GATC	3 cut(s)	109, 342, 552
NgoMIV	GCCGGC	1 cut(s)	818
NlaIII	CATG	5 cut(s)	29, 64, 373, 611, 802
NlaIV	GGNNCC	1 cut(s)	501
NmuCI	GTSAC	3 cut(s)	265, 397, 484
NruI	TCGCGA	1 cut(s)	692
NsbI	TGCGCA	1 cut(s)	681
PceI	AGGCCT	1 cut(s)	738
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	921
PctI	GAATGC	1 cut(s)	245
PdiI	GCCGGC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	352, 912
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	8 cut(s)	37, 262, 360, 388, 444, 469, 478, 666
PsiI	TTATAA	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	501
PspPI	GGNCC	2 cut(s)	465, 821
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	692
RsaI	GTAC	3 cut(s)	374, 434, 948
RsaNI	GTAC	3 cut(s)	373, 433, 947
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	3 cut(s)	126, 425, 569
SatI	GCNGC	8 cut(s)	36, 261, 359, 387, 443, 468, 477, 665
Sau3AI	GATC	3 cut(s)	109, 342, 552
Sau96I	GGNCC	2 cut(s)	465, 821
ScrFI	CCNGG	2 cut(s)	251, 970
SduI	GDGCHC	1 cut(s)	968
SetI	ASST	9 cut(s)	78, 99, 341, 396, 425, 493, 588, 653, 666
SfaNI	GCATC	2 cut(s)	758, 975
SfcI	CTRYAG	2 cut(s)	507, 646
SmlI	CTYRAG	1 cut(s)	906
SmoI	CTYRAG	1 cut(s)	906
Sse9I	AATT	5 cut(s)	123, 131, 143, 272, 295
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	8 cut(s)	221, 288, 356, 386, 468, 476, 756, 836
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	2 cut(s)	249, 968
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	3 cut(s)	43, 574, 699
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	323, 456, 701
TasI	AATT	5 cut(s)	123, 131, 143, 272, 295
TatI	WGTACW	1 cut(s)	946
TauI	GCSGC	3 cut(s)	389, 470, 479
TfiI	GAWTC	2 cut(s)	352, 912
Tru1I	TTAA	3 cut(s)	126, 425, 569
Tru9I	TTAA	3 cut(s)	126, 425, 569
TscAI	CASTG	3 cut(s)	46, 261, 511
TseFI	GTSAC	3 cut(s)	265, 397, 484
TseI	GCWGC	5 cut(s)	35, 260, 358, 442, 664
Tsp45I	GTSAC	3 cut(s)	265, 397, 484
TspDTI	ATGAA	3 cut(s)	215, 483, 802
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	3 cut(s)	46, 261, 511
Van91I	CCANNNNNTGG	1 cut(s)	31
XapI	RAATTY	4 cut(s)	131, 143, 272, 295
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.