Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016676

Physical Location & Seq

Genomic Coordinates Reverse (-)

5281848 .. 5283987

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATTTCCCTAATTGATGTCTACCATGTTGTGGCAGCAACTGTTCCTTTGTATGTTGCTATGGGTTTAGCCTATGTTTCTGTGAAATGGTGGAAGCTTTTCACACCAGAACAATGTTCTGGCATAAACAAGTTTGTCGCGAAATTCTCAATCCCATTGCTGTCATTTCAAGTGATTTCTGCCAATAACCCCTACAAAATGAACCTCAAGCTCATTCTCTCGGATGGTCTACAAAAGGCAATTGTTTTCTTGGCACTGACAGCAATCACTAAATTCAGCTCCCATGGTGGCTTGAATTCCATCATCACAGGTCTTTCTCTCTCCACCTTGCCTAACACATTGATCCTTGGAATTCCACTTTTGAAGGCCATGTATGGTGAAGAAGCAGGCGCGCTTGTTAGTCAGATAGTTGTCTTACAAAGCTTAGTTTGGTACAATCTGTTGCTGTTTCTGTTCGAGTTTGGAGCAGCAAAGGCAGCTTCTGTGACACCTTCATCAGAAGCAACTGCAGAGGAGATGGAGGCCCCTAATGAAGCACAATCAAAAGACGAAGCAGAGGATGAAGAGAGAACCAGAAATCCCAAGAAAATGAAATCTATTCTATTGACAGTTGGGAGGAAGCTTTTCGCCAACCCCAACACTCATGCAACAATGTTGAGTCTAATTTGGGCTGGCATACACTTCAGATGGGGAGTGAAAATGCCAGAAATTGTTACGCAATCAATTTCGATAATGGCAAATGGAGGACTTGGTATGGCAACATTCAGCTTAGGCCTTTTTATGGCGTCGCGGCCTAGTATAATAGCTTGCGGAACACGAATGACAGCAGTAGCCATGGGACTTAAGTTCATTGCTGGACCTGCTGTAATGGCACTGTCTTCCTTTGCAATAGGACTAAGAGGCAGAGCTCTGAGAATAGCAATTGTGCAGGCAGCTCTTCCTCAAGGAATTGTTCCTTTTGTTTTCGCCAAGGAATATAATGTGCATCCAGAAATTCTGAGCACCGCAGTAATTTTTGGCATGCTCATTGCTTTGCCTATAGCATTGGCCTACTACTTCCTACTGGGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

357

Amino Acids

38.53

Weight (kDa)

9.32

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	9 - 352	1.2e-89	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15100
fragaria_vesca	FvH4_6g49240
malus_domestica	MD09G1047300.v1.1
prunus_persica	Prupe.3G271700_v2.0.a1
pyrus_communis	pycom111g03810
rosa_chinensis	RchiOBHm_Chr2g0169101
rosa_laevigata	RLG00000021834
rosa_roxburghii	Rroxscaffold_2G00082450
rosa_rugosa	Rorug02G0536900
rosa_samantha	Rh2AG608800 Rh2BG621700 Rh2CG590400 Rh2DG632300
rosa_wichuraiana	Rw2G050480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1072
Acc36I	ACCTGC	1 cut(s)	868
AccB7I	CCANNNNNTGG	1 cut(s)	31
AccI	GTMKAC	2 cut(s)	21, 229
AccII	CGCG	3 cut(s)	140, 392, 790
AciI	CCGC	3 cut(s)	790, 810, 1005
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	5 cut(s)	143, 272, 295, 351, 993
AcuI	CTGAAG	1 cut(s)	667
AcyI	GRCGYC	1 cut(s)	785
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	31, 781
AflII	CTTAAG	1 cut(s)	842
AgsI	TTSAA	3 cut(s)	170, 295, 364
AloI	GAACNNNNNNTCC	2 cut(s)	562, 594
Alw21I	GWGCWC	2 cut(s)	910, 1004
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	2 cut(s)	41, 482
AoxI	GGCC	5 cut(s)	366, 522, 772, 791, 1047
ApeKI	GCWGC	4 cut(s)	35, 467, 476, 932
ApoI	RAATTY	5 cut(s)	143, 272, 295, 351, 993
Asp700I	GAANNNNTTC	2 cut(s)	98, 623
AspLEI	GCGC	2 cut(s)	392, 394
AspS9I	GGNCC	2 cut(s)	523, 857
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	857
BanII	GRGCYC	1 cut(s)	910
BbsI	GAAGAC	1 cut(s)	870
Bbv12I	GWGCWC	2 cut(s)	910, 1004
BbvI	GCAGC	4 cut(s)	47, 479, 488, 944
BccI	CCATC	4 cut(s)	218, 308, 511, 681
BfaI	CTAG	1 cut(s)	795
BfmI	CTRYAG	2 cut(s)	507, 1038
BfrI	CTTAAG	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	868
BisI	GCNGC	5 cut(s)	36, 468, 477, 791, 933
BlsI	GCNGC	5 cut(s)	37, 469, 478, 792, 934
Bme18I	GGWCC	1 cut(s)	857
BmgT120I	GGNCC	2 cut(s)	523, 857
BmiI	GGNNCC	1 cut(s)	525
BmrI	ACTGGG	1 cut(s)	1073
BmsI	GCATC	1 cut(s)	994
BmuI	ACTGGG	1 cut(s)	1073
BpiI	GAAGAC	1 cut(s)	870
Bpu10I	CCTNAGC	1 cut(s)	769
BpuEI	CTTGAG	2 cut(s)	191, 927
BsaHI	GRCGYC	1 cut(s)	785
BsaJI	CCNNGG	4 cut(s)	283, 346, 834, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 781
Bse1I	ACTGG	1 cut(s)	1068
Bse3DI	GCAATG	3 cut(s)	155, 849, 1026
BseDI	CCNNGG	4 cut(s)	283, 346, 834, 969
BseGI	GGATG	3 cut(s)	229, 565, 985
BseLI	CCNNNNNNNGG	2 cut(s)	31, 781
BseMI	GCAATG	3 cut(s)	155, 849, 1026
BseMII	CTCAG	2 cut(s)	902, 989
BseNI	ACTGG	1 cut(s)	1068
BsePI	GCGCGC	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	4 cut(s)	47, 479, 488, 944
BsgI	GTGCAG	1 cut(s)	947
Bsh1236I	CGCG	3 cut(s)	140, 392, 790
BshFI	GGCC	5 cut(s)	368, 524, 774, 793, 1049
BsiHKAI	GWGCWC	2 cut(s)	910, 1004
BslFI	GGGAC	1 cut(s)	852
BslI	CCNNNNNNNGG	2 cut(s)	31, 781
BsmFI	GGGAC	1 cut(s)	852
BsnI	GGCC	5 cut(s)	368, 524, 774, 793, 1049
Bsp1286I	GDGCHC	2 cut(s)	910, 1004
Bsp143I	GATC	1 cut(s)	342
Bsp19I	CCATGG	2 cut(s)	283, 834
Bsp68I	TCGCGA	1 cut(s)	140
BspACI	CCGC	3 cut(s)	790, 810, 1005
BspANI	GGCC	5 cut(s)	368, 524, 774, 793, 1049
BspCNI	CTCAG	2 cut(s)	903, 990
BspFNI	CGCG	3 cut(s)	140, 392, 790
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	868
BspPI	GGATC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	942
BspTI	CTTAAG	1 cut(s)	842
BsrDI	GCAATG	3 cut(s)	155, 849, 1026
BsrI	ACTGG	1 cut(s)	1068
BssECI	CCNNGG	4 cut(s)	283, 346, 834, 969
BssHII	GCGCGC	1 cut(s)	390
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	785
BssT1I	CCWWGG	4 cut(s)	283, 346, 834, 969
Bst4CI	ACNGT	3 cut(s)	43, 610, 876
Bst6I	CTCTTC	2 cut(s)	558, 942
BstACI	GRCGYC	1 cut(s)	785
BstAFI	CTTAAG	1 cut(s)	842
BstC8I	GCNNGC	6 cut(s)	388, 392, 673, 808, 930, 1022
BstDEI	CTNAG	5 cut(s)	424, 769, 896, 911, 998
BstDSI	CCRYGG	2 cut(s)	283, 834
BstF5I	GGATG	3 cut(s)	229, 565, 985
BstFNI	CGCG	3 cut(s)	140, 392, 790
BstHHI	GCGC	2 cut(s)	392, 394
BstKTI	GATC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 473, 476, 860, 869
BstNSI	RCATGY	1 cut(s)	1024
BstSFI	CTRYAG	2 cut(s)	507, 1038
BstUI	CGCG	3 cut(s)	140, 392, 790
BstV1I	GCAGC	4 cut(s)	47, 479, 488, 944
BstV2I	GAAGAC	1 cut(s)	870
BsuRI	GGCC	5 cut(s)	368, 524, 774, 793, 1049
BtgI	CCRYGG	2 cut(s)	283, 834
BtsCI	GGATG	3 cut(s)	229, 565, 985
BtsIMutI	CAGTG	2 cut(s)	254, 872
BtuMI	TCGCGA	1 cut(s)	140
BveI	ACCTGC	1 cut(s)	868
Cac8I	GCNNGC	6 cut(s)	388, 392, 673, 808, 930, 1022
CaiI	CAGNNNCTG	2 cut(s)	41, 482
CfoI	GCGC	2 cut(s)	392, 394
Cfr13I	GGNCC	2 cut(s)	523, 857
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	6 cut(s)	26, 284, 370, 644, 835, 1021
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	5 cut(s)	424, 769, 896, 911, 998
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	558, 942
EarI	CTCTTC	2 cut(s)	558, 942
Ecl136II	GAGCTC	1 cut(s)	908
Eco130I	CCWWGG	4 cut(s)	283, 346, 834, 969
Eco147I	AGGCCT	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	857
Eco53kI	GAGCTC	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	908
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRI	GAATTC	2 cut(s)	295, 351
EcoT14I	CCWWGG	4 cut(s)	283, 346, 834, 969
EcoT38I	GRGCYC	1 cut(s)	910
ErhI	CCWWGG	4 cut(s)	283, 346, 834, 969
FaeI	CATG	6 cut(s)	29, 287, 373, 647, 838, 1024
FaqI	GGGAC	1 cut(s)	852
FatI	CATG	6 cut(s)	25, 283, 369, 643, 834, 1020
FblI	GTMKAC	2 cut(s)	21, 229
Fnu4HI	GCNGC	5 cut(s)	36, 468, 477, 791, 933
FokI	GGATG	3 cut(s)	236, 572, 972
FriOI	GRGCYC	1 cut(s)	910
Fsp4HI	GCNGC	5 cut(s)	36, 468, 477, 791, 933
FspBI	CTAG	1 cut(s)	795
GlaI	GCGC	2 cut(s)	391, 393
GluI	GCNGC	5 cut(s)	36, 468, 477, 791, 933
HaeIII	GGCC	5 cut(s)	368, 524, 774, 793, 1049
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	2 cut(s)	392, 394
Hin1I	GRCGYC	1 cut(s)	785
Hin1II	CATG	6 cut(s)	29, 287, 373, 647, 838, 1024
Hin6I	GCGC	2 cut(s)	390, 392
HinP1I	GCGC	2 cut(s)	390, 392
HindIII	AAGCTT	3 cut(s)	95, 421, 620
HinfI	GANTC	1 cut(s)	658
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	22, 230
Hpy188I	TCNGA	6 cut(s)	223, 405, 499, 686, 912, 999
Hpy188III	TCNNGA	2 cut(s)	139, 989
Hpy8I	GTNNAC	2 cut(s)	22, 230
Hpy99I	CGWCG	1 cut(s)	790
HpyAV	CCTTC	2 cut(s)	358, 501
HpyCH4III	ACNGT	3 cut(s)	43, 610, 876
HpyCH4V	TGCA	5 cut(s)	509, 647, 887, 928, 985
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 473, 476, 860, 869
HpyF3I	CTNAG	5 cut(s)	424, 769, 896, 911, 998
Hsp92I	GRCGYC	1 cut(s)	785
Hsp92II	CATG	6 cut(s)	29, 287, 373, 647, 838, 1024
HspAI	GCGC	2 cut(s)	390, 392
Kzo9I	GATC	1 cut(s)	342
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	2 cut(s)	284, 464
Lsp1109I	GCAGC	4 cut(s)	47, 479, 488, 944
LweI	GCATC	1 cut(s)	994
MaeI	CTAG	1 cut(s)	795
MaeIII	GTNAC	2 cut(s)	484, 712
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	4 cut(s)	392, 575, 870, 929
MfeI	CAATTG	2 cut(s)	240, 921
MhlI	GDGCHC	2 cut(s)	910, 1004
MlyI	GAGTC	1 cut(s)	667
MnlI	CCTC	8 cut(s)	215, 505, 514, 550, 609, 737, 893, 951
MroXI	GAANNNNTTC	2 cut(s)	98, 623
MseI	TTAA	1 cut(s)	843
MspCI	CTTAAG	1 cut(s)	842
MunI	CAATTG	2 cut(s)	240, 921
MvnI	CGCG	3 cut(s)	140, 392, 790
MwoI	GCNNNNNNNGC	5 cut(s)	260, 473, 476, 860, 869
NcoI	CCATGG	2 cut(s)	283, 834
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	6 cut(s)	29, 287, 373, 647, 838, 1024
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	484
NruI	TCGCGA	1 cut(s)	140
NspI	RCATGY	1 cut(s)	1024
PaeI	GCATGC	1 cut(s)	1024
PauI	GCGCGC	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	774
PciSI	GCTCTTC	1 cut(s)	942
PdmI	GAANNNNTTC	2 cut(s)	98, 623
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	37, 469, 478, 792, 934
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
PsiI	TTATAA	1 cut(s)	1072
Psp124BI	GAGCTC	1 cut(s)	910
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	2 cut(s)	523, 857
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	2 cut(s)	41, 482
PteI	GCGCGC	1 cut(s)	390
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	910
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	5 cut(s)	36, 468, 477, 791, 933
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	2 cut(s)	523, 857
SchI	GAGTC	1 cut(s)	667
SduI	GDGCHC	2 cut(s)	910, 1004
SfaNI	GCATC	1 cut(s)	994
SfcI	CTRYAG	2 cut(s)	507, 1038
SinI	GGWCC	1 cut(s)	857
SmlI	CTYRAG	3 cut(s)	206, 842, 942
SmoI	CTYRAG	3 cut(s)	206, 842, 942
SphI	GCATGC	1 cut(s)	1024
SseBI	AGGCCT	1 cut(s)	774
SsiI	CCGC	3 cut(s)	790, 810, 1005
SspMI	CTAG	1 cut(s)	795
SstI	GAGCTC	1 cut(s)	910
StuI	AGGCCT	1 cut(s)	774
StyI	CCWWGG	4 cut(s)	283, 346, 834, 969
TaaI	ACNGT	3 cut(s)	43, 610, 876
TaqI	TCGA	2 cut(s)	456, 728
TauI	GCSGC	1 cut(s)	793
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TscAI	CASTG	2 cut(s)	261, 879
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	4 cut(s)	35, 467, 476, 932
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	6 cut(s)	215, 483, 546, 576, 605, 838
TspRI	CASTG	2 cut(s)	261, 879
Van91I	CCANNNNNTGG	1 cut(s)	31
Vha464I	CTTAAG	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	5 cut(s)	143, 272, 295, 351, 993
XceI	RCATGY	1 cut(s)	1024
XmiI	GTMKAC	2 cut(s)	21, 229
XmnI	GAANNNNTTC	2 cut(s)	98, 623
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.