Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016676

Physical Location & Seq

Genomic Coordinates Forward (+)

25236493 .. 25238960

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G271700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGATTTCTCTAGCTGATGTCTATCATGTTGTGGCAGCCACTGTCCCTCTATATGTTGCCATGATTTTAGCCTATGTTTCTGTGAAATGGTGGAAGCTCTTCACACCAGATCAATGTTCTGGCATAAACAAGTTTGTGGCAAAATTCTCAATTCCTCTCTTGTCGTTTCAAGTGATTTCTGGGAATAACCCCTACAAAATGAACCTCAAACTCATTCTCTCTGACTGCCTACAAAAACTAATTGCTTTTCTAGCATTGACAGCAATCACTAAATTCAGCTCCCATGGAGGCTTGAATTCGATCATAACCGGTCTCTCTCTGTCAACTATGCCTAACACATTAATCTTGGGAATTCCTCTGTTAAAGGCCATGTATGGGGATGAAGCAGCCATGCTCGTTACTCAGATAGTTGTGTTACAGAGCTTAATCTGGTACAATATGTTATTGTTTCTCTTTGAGTTCAGGGCTGCTAAGGCAGCTTCTGTGACACCTTCATCAGAATCCACTGCAGAGGAGATGGAAGCCCCTCAAGAAGCACAATCCAAAGAGGAAGCAGAGGATGAAACAAGAAGCAGAACTCCTAAGAAAATCAAATCTATTCTCTTAACAGTTGGGAGGAAGCTTATAGCCAACCCTAACACACATGCAACATTGTTGGGTCTAATTTGGGCAAGCATACACTACAAGTGGGGGGTGAAACTGCCAGATATTGTCACACAATCAATTGCAATACTGTCAAATGGAGGACTTGGTATGGCAATGTTCAGCTTAGGCCTTTTCATGGCATCGCGTGGCAGCATAATAGCATGCGGGACACGAACGGGGATGCTAGCCATGGGATTGAAGTTCATAGCTGGGCCTGCGCTAATGGCAGTGTCCTCCTTTGCAGTTGGACTAAGAGGCAGAATTCTCAGAGTGGCAATTGTGCAGGCGGCTCTTCCTCAAGGAATCGTTCCATTCGTTTTCGCGAAAGAATACAATGTACATCCAGACATTTTGAGCACCGGGGTTATATTTGGGATGCTCATTGCCTTGCCAATAGCATTGGCCTACTACTTCCTACTGGGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009914 GO:0009926 GO:0009966 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048229 GO:0048583 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0060918 GO:0060919 GO:0065007 GO:0065008 GO:0071944 GO:0080161 GO:0080162

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

358

Amino Acids

38.63

Weight (kDa)

9.4

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15100
fragaria_vesca	FvH4_6g49240
malus_domestica	MD09G1047300.v1.1
prunus_persica	Prupe.3G271700_v2.0.a1
pyrus_communis	pycom111g03810
rosa_chinensis	RchiOBHm_Chr2g0169101
rosa_laevigata	RLG00000021834
rosa_roxburghii	Rroxscaffold_2G00082450
rosa_rugosa	Rorug02G0536900
rosa_samantha	Rh2AG608800 Rh2BG621700 Rh2CG590400 Rh2DG632300
rosa_wichuraiana	Rw2G050480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	790, 968
AciI	CCGC	2 cut(s)	810, 932
AcsI	RAATTY	5 cut(s)	143, 272, 295, 351, 906
AfaI	GTAC	2 cut(s)	434, 984
AfiI	CCNNNNNNNGG	2 cut(s)	375, 781
AgeI	ACCGGT	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	170, 295, 844
AluBI	AGCT	8 cut(s)	14, 97, 279, 423, 479, 622, 768, 854
AluI	AGCT	8 cut(s)	14, 97, 279, 423, 479, 622, 768, 854
Alw21I	GWGCWC	1 cut(s)	1004
Alw26I	GTCTC	1 cut(s)	317
AlwNI	CAGNNNCTG	2 cut(s)	41, 482
AoxI	GGCC	4 cut(s)	366, 772, 857, 1047
ApeKI	GCWGC	5 cut(s)	35, 386, 467, 476, 795
ApoI	RAATTY	5 cut(s)	143, 272, 295, 351, 906
AseI	ATTAAT	1 cut(s)	341
AsiGI	ACCGGT	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	865
AspS9I	GGNCC	1 cut(s)	857
AsuC2I	CCSGG	1 cut(s)	1006
AsuHPI	GGTGA	1 cut(s)	706
AsuNHI	GCTAGC	1 cut(s)	829
Bbv12I	GWGCWC	1 cut(s)	1004
BbvI	GCAGC	5 cut(s)	47, 398, 454, 488, 807
BccI	CCATC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	1006
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	3 cut(s)	11, 251, 830
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	6 cut(s)	36, 387, 468, 477, 796, 933
BlsI	GCNGC	6 cut(s)	37, 388, 469, 478, 797, 934
Bme1390I	CCNGG	1 cut(s)	1006
BmgT120I	GGNCC	1 cut(s)	857
BmrFI	CCNGG	1 cut(s)	1006
BmrI	ACTGGG	1 cut(s)	1073
BmsI	GCATC	3 cut(s)	794, 816, 1011
BmtI	GCTAGC	1 cut(s)	833
BmuI	ACTGGG	1 cut(s)	1073
Bpu10I	CCTNAGC	2 cut(s)	471, 769
BpuEI	CTTGAG	2 cut(s)	513, 927
BpuMI	CCSGG	1 cut(s)	1006
BsaBI	GATNNNNATC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	283, 834, 1005
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 781
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	1068
Bse3DI	GCAATG	2 cut(s)	765, 1026
Bse8I	GATNNNNATC	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	283, 834, 1005
BseGI	GGATG	5 cut(s)	385, 565, 831, 985, 1026
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	375, 781
BseMI	GCAATG	2 cut(s)	765, 1026
BseMII	CTCAG	2 cut(s)	416, 925
BseNI	ACTGG	1 cut(s)	1068
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	5 cut(s)	47, 398, 454, 488, 807
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	947
Bsh1236I	CGCG	2 cut(s)	790, 968
BshFI	GGCC	4 cut(s)	368, 774, 859, 1049
BshTI	ACCGGT	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	1004
BsiSI	CCGG	2 cut(s)	309, 1005
BslFI	GGGAC	2 cut(s)	29, 826
BslI	CCNNNNNNNGG	2 cut(s)	375, 781
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	29, 826
BsnI	GGCC	4 cut(s)	368, 774, 859, 1049
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	1004
Bsp1407I	TGTACA	1 cut(s)	982
Bsp143I	GATC	2 cut(s)	109, 300
Bsp19I	CCATGG	2 cut(s)	283, 834
Bsp68I	TCGCGA	1 cut(s)	968
BspACI	CCGC	2 cut(s)	810, 932
BspANI	GGCC	4 cut(s)	368, 774, 859, 1049
BspCNI	CTCAG	2 cut(s)	415, 924
BspFNI	CGCG	2 cut(s)	790, 968
BspMAI	CTGCAG	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	833
BspQI	GCTCTTC	2 cut(s)	104, 942
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	765, 1026
BsrFI	RCCGGY	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	982
BsrI	ACTGG	1 cut(s)	1068
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	283, 834, 1005
BssMI	GATC	2 cut(s)	109, 300
BssT1I	CCWWGG	2 cut(s)	283, 834
Bst4CI	ACNGT	3 cut(s)	43, 610, 735
Bst6I	CTCTTC	2 cut(s)	104, 942
BstAUI	TGTACA	1 cut(s)	982
BstC8I	GCNNGC	5 cut(s)	673, 808, 831, 861, 930
BstDEI	CTNAG	6 cut(s)	402, 471, 582, 769, 896, 911
BstDSI	CCRYGG	2 cut(s)	283, 834
BstF5I	GGATG	5 cut(s)	385, 565, 831, 985, 1026
BstFNI	CGCG	2 cut(s)	790, 968
BstHHI	GCGC	1 cut(s)	865
BstKTI	GATC	2 cut(s)	112, 303
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	109, 300
BstMWI	GCNNNNNNNGC	6 cut(s)	251, 260, 473, 476, 860, 869
BstNSI	RCATGY	2 cut(s)	647, 810
BstSCI	CCNGG	1 cut(s)	1004
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	2 cut(s)	790, 968
BstV1I	GCAGC	5 cut(s)	47, 398, 454, 488, 807
BsuRI	GGCC	4 cut(s)	368, 774, 859, 1049
BtgI	CCRYGG	2 cut(s)	283, 834
BtgZI	GCGATG	1 cut(s)	771
BtsCI	GGATG	5 cut(s)	385, 565, 831, 985, 1026
BtsI	GCAGTG	2 cut(s)	504, 879
BtsIMutI	CAGTG	3 cut(s)	39, 504, 879
BtuMI	TCGCGA	1 cut(s)	968
Cac8I	GCNNGC	5 cut(s)	673, 808, 831, 861, 930
CaiI	CAGNNNCTG	2 cut(s)	41, 482
CfoI	GCGC	1 cut(s)	865
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	857
Csp6I	GTAC	2 cut(s)	433, 983
CspAI	ACCGGT	1 cut(s)	308
CviAII	CATG	9 cut(s)	26, 61, 284, 370, 391, 644, 781, 807, 835
CviQI	GTAC	2 cut(s)	433, 983
DdeI	CTNAG	6 cut(s)	402, 471, 582, 769, 896, 911
DpnI	GATC	2 cut(s)	111, 302
DpnII	GATC	2 cut(s)	109, 300
Eam1104I	CTCTTC	2 cut(s)	104, 942
EarI	CTCTTC	2 cut(s)	104, 942
Eco130I	CCWWGG	2 cut(s)	283, 834
Eco147I	AGGCCT	1 cut(s)	774
Eco31I	GGTCTC	1 cut(s)	317
EcoRI	GAATTC	3 cut(s)	295, 351, 906
EcoT14I	CCWWGG	2 cut(s)	283, 834
ErhI	CCWWGG	2 cut(s)	283, 834
FaeI	CATG	9 cut(s)	29, 64, 287, 373, 394, 647, 784, 810, 838
FaqI	GGGAC	2 cut(s)	29, 826
FatI	CATG	9 cut(s)	25, 60, 283, 369, 390, 643, 780, 806, 834
FauI	CCCGC	1 cut(s)	803
Fnu4HI	GCNGC	6 cut(s)	36, 387, 468, 477, 796, 933
FokI	GGATG	5 cut(s)	392, 572, 838, 972, 1033
Fsp4HI	GCNGC	6 cut(s)	36, 387, 468, 477, 796, 933
FspBI	CTAG	3 cut(s)	11, 251, 830
GlaI	GCGC	1 cut(s)	864
GluI	GCNGC	6 cut(s)	36, 387, 468, 477, 796, 933
GsaI	CCCAGC	1 cut(s)	858
HaeIII	GGCC	4 cut(s)	368, 774, 859, 1049
HapII	CCGG	2 cut(s)	309, 1005
HhaI	GCGC	1 cut(s)	865
Hin1II	CATG	9 cut(s)	29, 64, 287, 373, 394, 647, 784, 810, 838
Hin6I	GCGC	1 cut(s)	863
HinP1I	GCGC	1 cut(s)	863
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	2 cut(s)	500, 948
HpaII	CCGG	2 cut(s)	309, 1005
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	4 cut(s)	223, 405, 499, 914
Hpy188III	TCNNGA	3 cut(s)	530, 967, 989
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	3 cut(s)	43, 610, 735
HpyCH4V	TGCA	5 cut(s)	509, 647, 728, 887, 928
HpyF10VI	GCNNNNNNNGC	6 cut(s)	251, 260, 473, 476, 860, 869
HpyF3I	CTNAG	6 cut(s)	402, 471, 582, 769, 896, 911
Hsp92II	CATG	9 cut(s)	29, 64, 287, 373, 394, 647, 784, 810, 838
HspAI	GCGC	1 cut(s)	863
Kzo9I	GATC	2 cut(s)	109, 300
LguI	GCTCTTC	2 cut(s)	104, 942
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	5 cut(s)	47, 398, 454, 488, 807
LweI	GCATC	3 cut(s)	794, 816, 1011
MaeI	CTAG	3 cut(s)	11, 251, 830
MaeIII	GTNAC	4 cut(s)	397, 414, 484, 712
MalI	GATC	2 cut(s)	111, 302
MboI	GATC	2 cut(s)	109, 300
MboII	GAAGA	2 cut(s)	91, 929
MfeI	CAATTG	2 cut(s)	723, 921
MhlI	GDGCHC	1 cut(s)	1004
MmeI	TCCRAC	1 cut(s)	871
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	4 cut(s)	341, 362, 425, 605
MspI	CCGG	2 cut(s)	309, 1005
MspR9I	CCNGG	1 cut(s)	1006
MunI	CAATTG	2 cut(s)	723, 921
MvnI	CGCG	2 cut(s)	790, 968
MwoI	GCNNNNNNNGC	6 cut(s)	251, 260, 473, 476, 860, 869
NciI	CCSGG	1 cut(s)	1006
NcoI	CCATGG	2 cut(s)	283, 834
NdeII	GATC	2 cut(s)	109, 300
NheI	GCTAGC	1 cut(s)	829
NlaIII	CATG	9 cut(s)	29, 64, 287, 373, 394, 647, 784, 810, 838
NmuCI	GTSAC	2 cut(s)	484, 712
NruI	TCGCGA	1 cut(s)	968
NspI	RCATGY	2 cut(s)	647, 810
PaeI	GCATGC	1 cut(s)	810
PceI	AGGCCT	1 cut(s)	774
PciSI	GCTCTTC	2 cut(s)	104, 942
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	500, 948
PinAI	ACCGGT	1 cut(s)	308
PkrI	GCNGC	6 cut(s)	37, 388, 469, 478, 797, 934
PshBI	ATTAAT	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	854
PspPI	GGNCC	1 cut(s)	857
PstI	CTGCAG	1 cut(s)	511
PstNI	CAGNNNCTG	2 cut(s)	41, 482
RruI	TCGCGA	1 cut(s)	968
RsaI	GTAC	2 cut(s)	434, 984
RsaNI	GTAC	2 cut(s)	433, 983
SapI	GCTCTTC	2 cut(s)	104, 942
SaqAI	TTAA	4 cut(s)	341, 362, 425, 605
SatI	GCNGC	6 cut(s)	36, 387, 468, 477, 796, 933
Sau3AI	GATC	2 cut(s)	109, 300
Sau96I	GGNCC	1 cut(s)	857
ScrFI	CCNGG	1 cut(s)	1006
SduI	GDGCHC	1 cut(s)	1004
SfaNI	GCATC	3 cut(s)	794, 816, 1011
SfcI	CTRYAG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	528, 942
SmoI	CTYRAG	2 cut(s)	528, 942
SphI	GCATGC	1 cut(s)	810
SseBI	AGGCCT	1 cut(s)	774
SsiI	CCGC	2 cut(s)	810, 932
SspMI	CTAG	3 cut(s)	11, 251, 830
StuI	AGGCCT	1 cut(s)	774
StyD4I	CCNGG	1 cut(s)	1004
StyI	CCWWGG	2 cut(s)	283, 834
TaaI	ACNGT	3 cut(s)	43, 610, 735
TaqI	TCGA	1 cut(s)	299
TatI	WGTACW	1 cut(s)	982
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	2 cut(s)	500, 948
Tru1I	TTAA	4 cut(s)	341, 362, 425, 605
Tru9I	TTAA	4 cut(s)	341, 362, 425, 605
TscAI	CASTG	3 cut(s)	46, 511, 879
TseFI	GTSAC	2 cut(s)	484, 712
TseI	GCWGC	5 cut(s)	35, 386, 467, 476, 795
Tsp45I	GTSAC	2 cut(s)	484, 712
TspDTI	ATGAA	6 cut(s)	215, 396, 483, 576, 769, 838
TspRI	CASTG	3 cut(s)	46, 511, 879
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	5 cut(s)	143, 272, 295, 351, 906
XceI	RCATGY	2 cut(s)	647, 810
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	3 cut(s)	11, 251, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.