AT5G15440

EID1-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011042
Physical Location & Seq
Forward (+)
5012061 .. 5014281
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15440.1

Sequence Viewer

Length: 882 bp
ATGATTTTACCAAAGCAGTATTGTTGCACACACTCGCCGAGCTGCCAATGCACCAAAGGCCATTTAAACGAAGACGTGTTGTTATTAGTGTTCCAACATTTGAATTGGAATCCGAAATTAGTTGCAACACTTTCCTGTGTATGCAGATGGTTTGATGATTTCGCCAAACGGGTACTATGGAAAGAGTTTTGCAAGACTCGTGCCCCAAAAATGATGCTTGATTTGCAGTCTAGCGGTAGTCACTGCATTGACGGTAACTGGCGAGCCCTTGGGAAGCTTCTCATCTACTGCTCAGGATGTACACAAGGTGGTCTTTTCAATAGCTCTGTTCAAATCCCAGGCCACTTTGTTTATAGAACCCGGTTCTCAAGAACATTAGGAAGAAGCCTCCTTCCGCCTCAGTGTAGAACTGATGTACTCTATGTTTGTGATCCATGCGAGCATCTTGACCAAGGAGAAGAAGGCGACGTGGGTTTGTTCCGTGGGATTTTCAAGTCATTCCCAACATCGAAAGTTCGGAAAGTGATCATTAACAAGGCGGTTCCTTTTCATCCATCCGAGGTTTGCCCGTATTGTAAAGCTAAGCTATGGAGCATGCTACAAGCTAAGATAATACCTCAGAGTGCCTGCATTCGTTTGGAAGCTTATGAAGACTGCATTGAGTATTTTGTTTGCCTTAATGGACATTTGCTGGGTATCTGCACTCTCGCGCCTTTGTCTGATTCAGAGGATGCAATTCCAAGCGAAGATAACAATCACACAGAGAAGAAACAAGACAATGGCTTTCCTAGAGAGAACGTATTGAAAAGGAGAAATTCTTTGTTGGGTGGAAGTGAAAATGGACCTCCGCCGCAAAAACGACTGACCAATCCTAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.09

Weight (kDa)

8.57

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15440 AT5G39360
fragaria_vesca FvH4_6g47430 FvH4_6g47430 FvH4_6g47430 FvH4_6g47430
malus_domestica MD09G1061500.v1.1
prunus_persica Prupe.3G258700_v2.0.a1
pyrus_communis pycom08g15040
rosa_chinensis RchiOBHm_Chr2g0166511
rosa_laevigata RLG00000021624
rosa_multiflora Rmu_co8321839.1_g000001
rosa_roxburghii Rroxscaffold_2G00084820
rosa_rugosa Rorug02G0523700 Rorug02G0523800
rosa_samantha Rh2AG589600 Rh2BG601900 Rh2CG572600 Rh2DG612400
rosa_wichuraiana Rw2G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 710
AciI CCGC 5 cut(s) 234, 395, 539, 848, 851
AclWI GGATC 1 cut(s) 425
AcsI RAATTY 1 cut(s) 814
AdeI CACNNNGTG 1 cut(s) 308
AfaI GTAC 3 cut(s) 174, 301, 417
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 5 cut(s) 103, 319, 332, 493, 805
AjiI CACGTC 2 cut(s) 76, 469
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 7 cut(s) 42, 277, 324, 581, 586, 605, 644
AluI AGCT 7 cut(s) 42, 277, 324, 581, 586, 605, 644
AlwI GGATC 1 cut(s) 425
AoxI GGCC 2 cut(s) 58, 340
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 814
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 1 cut(s) 842
AsuC2I CCSGG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 842
BaeGI GKGCMC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 268
BauI CACGAG 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 78, 657
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 141, 562
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 525
BcnI CCSGG 1 cut(s) 361
BfaI CTAG 2 cut(s) 231, 789
BisI GCNGC 2 cut(s) 43, 851
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 2 cut(s) 44, 852
Bme1390I CCNGG 2 cut(s) 339, 361
Bme18I GGWCC 1 cut(s) 842
BmgBI CACGTC 2 cut(s) 76, 469
BmgT120I GGNCC 1 cut(s) 842
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 2 cut(s) 339, 361
BmsI GCATC 3 cut(s) 204, 451, 721
BpiI GAAGAC 2 cut(s) 78, 657
Bpu10I CCTNAGC 1 cut(s) 292
Bpu1102I GCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 361
BsaBI GATNNNNATC 1 cut(s) 753
BsaJI CCNNGG 5 cut(s) 268, 337, 451, 481, 558
Bse1I ACTGG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 5 cut(s) 268, 337, 451, 481, 558
BseGI GGATG 4 cut(s) 302, 550, 554, 736
BseJI GATNNNNATC 1 cut(s) 753
BseMII CTCAG 3 cut(s) 306, 413, 632
BseNI ACTGG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 685
Bsh1236I CGCG 1 cut(s) 710
BshFI GGCC 2 cut(s) 60, 342
BsiSI CCGG 1 cut(s) 361
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 2 cut(s) 60, 342
Bsp1286I GDGCHC 2 cut(s) 205, 268
Bsp1407I TGTACA 1 cut(s) 299
Bsp143I GATC 2 cut(s) 430, 525
Bsp1720I GCTNAGC 1 cut(s) 582
BspACI CCGC 5 cut(s) 234, 395, 539, 848, 851
BspANI GGCC 2 cut(s) 60, 342
BspCNI CTCAG 3 cut(s) 305, 412, 631
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 1 cut(s) 543
BspPI GGATC 1 cut(s) 425
BsrGI TGTACA 1 cut(s) 299
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 5 cut(s) 268, 337, 451, 481, 558
BssMI GATC 2 cut(s) 430, 525
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 2 cut(s) 268, 451
Bst2BI CACGAG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 299
BstC8I GCNNGC 4 cut(s) 264, 440, 596, 628
BstDEI CTNAG 5 cut(s) 292, 399, 582, 606, 618
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 4 cut(s) 302, 550, 554, 736
BstFNI CGCG 1 cut(s) 710
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 2 cut(s) 433, 528
BstMBI GATC 2 cut(s) 430, 525
BstMWI GCNNNNNNNGC 3 cut(s) 48, 57, 223
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 598
BstSCI CCNGG 2 cut(s) 337, 359
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 2 cut(s) 78, 657
BsuRI GGCC 2 cut(s) 60, 342
BtgI CCRYGG 1 cut(s) 481
BtrI CACGTC 2 cut(s) 76, 469
BtsCI GGATG 4 cut(s) 302, 550, 554, 736
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 241, 407
Cac8I GCNNGC 4 cut(s) 264, 440, 596, 628
CfoI GCGC 1 cut(s) 712
Cfr13I GGNCC 1 cut(s) 842
Csp6I GTAC 3 cut(s) 173, 300, 416
CviAII CATG 2 cut(s) 435, 595
CviQI GTAC 3 cut(s) 173, 300, 416
DdeI CTNAG 5 cut(s) 292, 399, 582, 606, 618
DpnI GATC 2 cut(s) 432, 527
DpnII GATC 2 cut(s) 430, 525
DraI TTTAAA 1 cut(s) 66
DraIII CACNNNGTG 1 cut(s) 308
EciI GGCGGA 2 cut(s) 384, 837
Eco130I CCWWGG 2 cut(s) 268, 451
Eco24I GRGCYC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 268, 451
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 268, 451
FaeI CATG 2 cut(s) 438, 598
FaiI YATR 8 cut(s) 142, 178, 354, 423, 436, 589, 596, 648
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 2 cut(s) 434, 594
FbaI TGATCA 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 43, 851
FokI GGATG 4 cut(s) 309, 537, 541, 743
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 2 cut(s) 43, 851
FspBI CTAG 2 cut(s) 231, 789
GlaI GCGC 1 cut(s) 711
GluI GCNGC 2 cut(s) 43, 851
GsaI CCCAGC 1 cut(s) 695
HaeIII GGCC 2 cut(s) 60, 342
HapII CCGG 1 cut(s) 361
HhaI GCGC 1 cut(s) 712
Hin1II CATG 2 cut(s) 438, 598
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HindIII AAGCTT 2 cut(s) 275, 642
HinfI GANTC 3 cut(s) 109, 196, 722
HpaII CCGG 1 cut(s) 361
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 6 cut(s) 114, 519, 559, 621, 721, 727
Hpy188III TCNNGA 3 cut(s) 294, 369, 446
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 1 cut(s) 470
HpyAV CCTTC 2 cut(s) 401, 455
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 3 cut(s) 75, 468, 798
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 57, 223
HpyF3I CTNAG 5 cut(s) 292, 399, 582, 606, 618
HpySE526I ACGT 3 cut(s) 75, 468, 798
Hsp92II CATG 2 cut(s) 438, 598
HspAI GCGC 1 cut(s) 710
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 2 cut(s) 430, 525
LmnI GCTCC 1 cut(s) 591
LpnPI CCDG 8 cut(s) 148, 244, 279, 324, 351, 374, 640, 677
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 3 cut(s) 204, 451, 721
MaeI CTAG 2 cut(s) 231, 789
MaeII ACGT 3 cut(s) 75, 468, 798
MaeIII GTNAC 2 cut(s) 239, 254
MalI GATC 2 cut(s) 432, 527
MboI GATC 2 cut(s) 430, 525
MboII GAAGA 6 cut(s) 83, 393, 470, 662, 758, 778
MhlI GDGCHC 2 cut(s) 205, 268
MluCI AATT 4 cut(s) 103, 116, 735, 814
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 6 cut(s) 398, 408, 553, 627, 721, 855
MseI TTAA 3 cut(s) 65, 531, 678
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 2 cut(s) 339, 361
Mva1269I GAATGC 1 cut(s) 630
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 3 cut(s) 48, 57, 223
NciI CCSGG 1 cut(s) 361
NdeII GATC 2 cut(s) 430, 525
NlaIII CATG 2 cut(s) 438, 598
NlaIV GGNNCC 1 cut(s) 543
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 598
PaeI GCATGC 1 cut(s) 598
PctI GAATGC 1 cut(s) 630
PfeI GAWTC 2 cut(s) 109, 722
PkrI GCNGC 2 cut(s) 44, 852
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 1 cut(s) 842
RsaI GTAC 3 cut(s) 174, 301, 417
RsaNI GTAC 3 cut(s) 173, 300, 416
SaqAI TTAA 3 cut(s) 65, 531, 678
SatI GCNGC 2 cut(s) 43, 851
Sau3AI GATC 2 cut(s) 430, 525
Sau96I GGNCC 1 cut(s) 842
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 339, 361
SduI GDGCHC 2 cut(s) 205, 268
SfaNI GCATC 3 cut(s) 204, 451, 721
SinI GGWCC 1 cut(s) 842
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SphI GCATGC 1 cut(s) 598
Sse9I AATT 4 cut(s) 103, 116, 735, 814
SsiI CCGC 5 cut(s) 234, 395, 539, 848, 851
SspMI CTAG 2 cut(s) 231, 789
StyD4I CCNGG 2 cut(s) 337, 359
StyI CCWWGG 2 cut(s) 268, 451
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 3 cut(s) 78, 471, 801
TaqI TCGA 1 cut(s) 509
TasI AATT 4 cut(s) 103, 116, 735, 814
TatI WGTACW 2 cut(s) 299, 415
TauI GCSGC 1 cut(s) 853
TfiI GAWTC 2 cut(s) 109, 722
Tru1I TTAA 3 cut(s) 65, 531, 678
Tru9I TTAA 3 cut(s) 65, 531, 678
TscAI CASTG 2 cut(s) 248, 407
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 539, 663
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 2 cut(s) 248, 407
VpaK11BI GGWCC 1 cut(s) 842
XapI RAATTY 1 cut(s) 814
XceI RCATGY 1 cut(s) 598
XspI CTAG 2 cut(s) 231, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.