Rw2G049150

EID1-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011042
Physical Location & Seq
Reverse (-)
76627053 .. 76629401
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049150.1

Sequence Viewer

Length: 771 bp
ATGGTCCTTAAAGTGGGTGGACAAATGATTCTCACGAAGCAGTATCGATGTATACATTCTGCAAGCTGTCAATGCACAAAAGGGCATCTAAGTGAAGATGCTATATTCCTTGTATTTCAACAATTGAATTGGAATCCTAAGTTAATAGCAACACTTTCCTGTGTCTGCAAATGGTTTGATGATCTTGCCAAACGTGTACTGTGGAAGGAGTTTTGTAAAACAAGAGCACCAAAGATGATGATTGATTTGCAATCTAGTGGGAGTCACAGTGTAGATCGAAACTGGAGGGCACTTGGAAAACTGCTTATTTACTGTTCAGGAAGTAAGAAGGGCGGCCTCTTTAATACCGTTCATATCCCTGGTCACTTTGTCTATAGGACCAGGTTTTCTAGGACATCGGGGAAGAGCTTCCTTTTGCCACAATGCAGAACAGATGTATTGTATGTCTCTGACCCGTGTGAACATCTTGACCAAGGAGAAGAGGGAGATGTGGGTTTCTTCCGGGGAATTTTCAAGTCGTTCTCAATGTCAAAGGTCCGGAAGATGTTGATTAAAAGAGAGGCCCAATTTCATCCAACAGAGGTGTGCCCTTACTGTAAGGCCAAGTTGTGGAGCATGTTGCAAGCCAAAATGATACCTCAAAGTGCCAGCTGCAGATTGGGCGCTTATGAGGATTGCATTGAGTATTTTGTTTGCCTCAATGGACATTTGCTCGGTATCTGTACTCTGTTACCTTTATCTGATTCAGAAGAGGCATCGGAGTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

29.1

Weight (kDa)

8.85

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15440 AT5G39360
fragaria_vesca FvH4_6g47430 FvH4_6g47430 FvH4_6g47430 FvH4_6g47430
malus_domestica MD09G1061500.v1.1
prunus_persica Prupe.3G258700_v2.0.a1
pyrus_communis pycom08g15040
rosa_chinensis RchiOBHm_Chr2g0166511
rosa_laevigata RLG00000021624
rosa_multiflora Rmu_co8321839.1_g000001
rosa_roxburghii Rroxscaffold_2G00084820
rosa_rugosa Rorug02G0523700 Rorug02G0523800
rosa_samantha Rh2AG589600 Rh2BG601900 Rh2CG572600 Rh2DG612400
rosa_wichuraiana Rw2G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 609
AccI GTMKAC 1 cut(s) 52
AccIII TCCGGA 1 cut(s) 537
AciI CCGC 1 cut(s) 333
AcsI RAATTY 1 cut(s) 507
AfaI GTAC 2 cut(s) 198, 724
AfiI CCNNNNNNNGG 2 cut(s) 13, 609
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 3 cut(s) 119, 127, 514
AjnI CCWGG 2 cut(s) 358, 380
AluBI AGCT 3 cut(s) 66, 408, 651
AluI AGCT 3 cut(s) 66, 408, 651
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 451
Aor13HI TCCGGA 1 cut(s) 537
AoxI GGCC 3 cut(s) 334, 561, 600
ApeKI GCWGC 1 cut(s) 651
ApoI RAATTY 1 cut(s) 507
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 665
AspS9I GGNCC 4 cut(s) 4, 378, 535, 562
AsuC2I CCSGG 1 cut(s) 503
AvaII GGWCC 3 cut(s) 4, 378, 535
BaeGI GKGCMC 2 cut(s) 292, 590
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 638
BciT130I CCWGG 2 cut(s) 360, 382
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 2 cut(s) 255, 390
BfmI CTRYAG 2 cut(s) 373, 652
BfoI RGCGCY 1 cut(s) 666
BisI GCNGC 2 cut(s) 334, 652
BlsI GCNGC 2 cut(s) 335, 653
Bme1390I CCNGG 3 cut(s) 360, 382, 503
Bme18I GGWCC 3 cut(s) 4, 378, 535
BmgT120I GGNCC 4 cut(s) 4, 378, 535, 562
BmrFI CCNGG 3 cut(s) 360, 382, 503
BmsI GCATC 3 cut(s) 88, 94, 764
BpmI CTGGAG 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 503
Bsa29I ATCGAT 1 cut(s) 46
BsaJI CCNNGG 3 cut(s) 358, 472, 502
BsaWI WCCGGW 1 cut(s) 537
BsaXI ACNNNNNCTCC 3 cut(s) 253, 283, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 609
Bse1I ACTGG 1 cut(s) 287
BseAI TCCGGA 1 cut(s) 537
BseBI CCWGG 2 cut(s) 360, 382
BseCI ATCGAT 1 cut(s) 46
BseDI CCNNGG 3 cut(s) 358, 472, 502
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 13, 609
BseNI ACTGG 1 cut(s) 287
BseSI GKGCMC 2 cut(s) 292, 590
BseXI GCAGC 1 cut(s) 638
BshFI GGCC 3 cut(s) 336, 563, 602
BshVI ATCGAT 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 2 cut(s) 502, 538
BslI CCNNNNNNNGG 2 cut(s) 13, 609
BsmAI GTCTC 1 cut(s) 451
BsnI GGCC 3 cut(s) 336, 563, 602
Bsp1286I GDGCHC 3 cut(s) 229, 292, 590
Bsp13I TCCGGA 1 cut(s) 537
Bsp143I GATC 2 cut(s) 181, 274
BspACI CCGC 1 cut(s) 333
BspANI GGCC 3 cut(s) 336, 563, 602
BspDI ATCGAT 1 cut(s) 46
BspEI TCCGGA 1 cut(s) 537
BspMAI CTGCAG 1 cut(s) 656
BspQI GCTCTTC 1 cut(s) 398
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 358, 472, 502
BssMI GATC 2 cut(s) 181, 274
BssNAI GTATAC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 472
Bst1107I GTATAC 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 360, 382
Bst4CI ACNGT 5 cut(s) 201, 269, 314, 349, 596
Bst6I CTCTTC 3 cut(s) 398, 474, 744
BstC8I GCNNGC 3 cut(s) 64, 624, 649
BstDEI CTNAG 2 cut(s) 89, 138
BstF5I GGATG 1 cut(s) 571
BstH2I RGCGCY 1 cut(s) 666
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 2 cut(s) 184, 277
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 2 cut(s) 181, 274
BstMWI GCNNNNNNNGC 2 cut(s) 72, 660
BstNI CCWGG 2 cut(s) 360, 382
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 3 cut(s) 358, 380, 501
BstSFI CTRYAG 2 cut(s) 373, 652
BstSLI GKGCMC 2 cut(s) 292, 590
BstV1I GCAGC 1 cut(s) 638
BstZ17I GTATAC 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 46
BsuRI GGCC 3 cut(s) 336, 563, 602
BsuTUI ATCGAT 1 cut(s) 46
BtsCI GGATG 1 cut(s) 571
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 3 cut(s) 64, 624, 649
CfoI GCGC 1 cut(s) 665
Cfr13I GGNCC 4 cut(s) 4, 378, 535, 562
ClaI ATCGAT 1 cut(s) 46
CsiI ACCWGGT 1 cut(s) 380
Csp6I GTAC 2 cut(s) 197, 723
CviAII CATG 1 cut(s) 616
CviJI RGCY 7 cut(s) 66, 336, 408, 563, 602, 626, 651
CviKI_1 RGCY 7 cut(s) 66, 336, 408, 563, 602, 626, 651
CviQI GTAC 2 cut(s) 197, 723
DdeI CTNAG 2 cut(s) 89, 138
DpnI GATC 2 cut(s) 183, 276
DpnII GATC 2 cut(s) 181, 274
Eam1104I CTCTTC 3 cut(s) 398, 474, 744
EarI CTCTTC 3 cut(s) 398, 474, 744
Eco130I CCWWGG 1 cut(s) 472
Eco47I GGWCC 3 cut(s) 4, 378, 535
EcoRII CCWGG 2 cut(s) 358, 380
EcoT14I CCWWGG 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 1 cut(s) 619
FaiI YATR 7 cut(s) 53, 104, 354, 375, 444, 617, 669
FatI CATG 1 cut(s) 615
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 334, 652
FokI GGATG 1 cut(s) 558
Fsp4HI GCNGC 2 cut(s) 334, 652
FspBI CTAG 2 cut(s) 255, 390
GlaI GCGC 1 cut(s) 664
GluI GCNGC 2 cut(s) 334, 652
GsuI CTGGAG 1 cut(s) 304
HaeII RGCGCY 1 cut(s) 666
HaeIII GGCC 3 cut(s) 336, 563, 602
HapII CCGG 2 cut(s) 502, 538
HhaI GCGC 1 cut(s) 665
Hin1II CATG 1 cut(s) 619
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HinfI GANTC 4 cut(s) 28, 133, 262, 743
HpaII CCGG 2 cut(s) 502, 538
Hpy166II GTNNAC 4 cut(s) 20, 53, 197, 461
Hpy188I TCNGA 4 cut(s) 451, 742, 748, 760
Hpy188III TCNNGA 4 cut(s) 34, 318, 467, 538
Hpy8I GTNNAC 4 cut(s) 20, 53, 197, 461
HpyAV CCTTC 2 cut(s) 199, 322
HpyCH4III ACNGT 5 cut(s) 201, 269, 314, 349, 596
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 8 cut(s) 62, 75, 168, 250, 426, 622, 654, 678
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 660
HpyF3I CTNAG 2 cut(s) 89, 138
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 1 cut(s) 619
HspAI GCGC 1 cut(s) 663
Kpn2I TCCGGA 1 cut(s) 537
Kzo9I GATC 2 cut(s) 181, 274
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 1 cut(s) 612
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 3 cut(s) 88, 94, 764
MabI ACCWGGT 1 cut(s) 380
MaeI CTAG 2 cut(s) 255, 390
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 3 cut(s) 263, 362, 729
MalI GATC 2 cut(s) 183, 276
MboI GATC 2 cut(s) 181, 274
MboII GAAGA 6 cut(s) 107, 415, 490, 491, 553, 761
MfeI CAATTG 1 cut(s) 122
MhlI GDGCHC 3 cut(s) 229, 292, 590
MluCI AATT 4 cut(s) 122, 127, 507, 566
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 2 cut(s) 599, 744
MnlI CCTC 9 cut(s) 279, 347, 475, 553, 574, 648, 664, 707, 745
MroI TCCGGA 1 cut(s) 537
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 4 cut(s) 9, 143, 342, 552
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 651
MspI CCGG 2 cut(s) 502, 538
MspR9I CCNGG 3 cut(s) 360, 382, 503
MunI CAATTG 1 cut(s) 122
MvaI CCWGG 2 cut(s) 360, 382
MwoI GCNNNNNNNGC 2 cut(s) 72, 660
NciI CCSGG 1 cut(s) 503
NdeII GATC 2 cut(s) 181, 274
NlaIII CATG 1 cut(s) 619
NmuCI GTSAC 2 cut(s) 263, 362
NspI RCATGY 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 3 cut(s) 28, 133, 743
PflMI CCANNNNNTGG 1 cut(s) 609
PkrI GCNGC 2 cut(s) 335, 653
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 358, 380
PspGI CCWGG 2 cut(s) 358, 380
PspPI GGNCC 4 cut(s) 4, 378, 535, 562
PstI CTGCAG 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 651
RsaI GTAC 2 cut(s) 198, 724
RsaNI GTAC 2 cut(s) 197, 723
RseI CAYNNNNRTG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 4 cut(s) 9, 143, 342, 552
SatI GCNGC 2 cut(s) 334, 652
Sau3AI GATC 2 cut(s) 181, 274
Sau96I GGNCC 4 cut(s) 4, 378, 535, 562
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 360, 382, 503
SduI GDGCHC 3 cut(s) 229, 292, 590
SetI ASST 9 cut(s) 68, 196, 386, 410, 537, 585, 640, 653, 736
SexAI ACCWGGT 1 cut(s) 380
SfaNI GCATC 3 cut(s) 88, 94, 764
SfcI CTRYAG 2 cut(s) 373, 652
SinI GGWCC 3 cut(s) 4, 378, 535
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 4 cut(s) 122, 127, 507, 566
SsiI CCGC 1 cut(s) 333
SspMI CTAG 2 cut(s) 255, 390
StyD4I CCNGG 3 cut(s) 358, 380, 501
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 5 cut(s) 201, 269, 314, 349, 596
TaiI ACGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 46, 277
TasI AATT 4 cut(s) 122, 127, 507, 566
TatI WGTACW 2 cut(s) 196, 722
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 3 cut(s) 28, 133, 743
Tru1I TTAA 4 cut(s) 9, 143, 342, 552
Tru9I TTAA 4 cut(s) 9, 143, 342, 552
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 2 cut(s) 263, 362
TseI GCWGC 1 cut(s) 651
Tsp45I GTSAC 2 cut(s) 263, 362
TspDTI ATGAA 2 cut(s) 341, 560
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 609
VpaK11BI GGWCC 3 cut(s) 4, 378, 535
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 2 cut(s) 255, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.