RLG00000021624

EID1-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011042
Physical Location & Seq
Reverse (-)
76839484 .. 76840562
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021624

Sequence Viewer

Length: 543 bp
ATGATGATTGATTTGCAATCTAGTGGGAGTCACAGTGTAGATGGAAACTGGAGGGCACTTGGAAAACTGCTTATTTACTGTTCAGGAAGTAAGAAGGGCGGCCTCTTTAATACCGTTCATATCCCTGGTCACTTTGTCTATAGGACCCGGTTTTCTAGGACATCAGGGAAGAGCTTCCTTTTGCCACAATGCAGAACAGATGTATTATATGTCTCTGACCCGTGTGAACATCTTGACCAAGGAGAAGAGGGAGATGTGGGTTTCTTCCGGGGAATTTTCAAGTCATTCTCAATGTCAAAGGTCCGGAAGATGTTGATTAAAAGAGGGGCCCAATTTCATCCAACAGAGAAGAGGCATCGGAGTTGGAGTGAAAGTCGAAACAAAAAAGAGGTTCCTTGCCATTTTGCAAGCATAAAGTTGTCGAGGCTGGACATATTTGGGGGCTCGAGCCGAAATGAACCATTAACAATCACATCAAGTGTTCGAGCATTCTGCCCTGCTCTGATGTTGTTTTACAATGGAAGTGTTAGAAGCTGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.31

Weight (kDa)

9.77

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15440 AT5G39360
fragaria_vesca FvH4_6g47430 FvH4_6g47430 FvH4_6g47430 FvH4_6g47430
malus_domestica MD09G1061500.v1.1
prunus_persica Prupe.3G258700_v2.0.a1
pyrus_communis pycom08g15040
rosa_chinensis RchiOBHm_Chr2g0166511
rosa_laevigata RLG00000021624
rosa_multiflora Rmu_co8321839.1_g000001
rosa_roxburghii Rroxscaffold_2G00084820
rosa_rugosa Rorug02G0523700 Rorug02G0523800
rosa_samantha Rh2AG589600 Rh2BG601900 Rh2CG572600 Rh2DG612400
rosa_wichuraiana Rw2G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 303
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 273
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 2 cut(s) 174, 534
AluI AGCT 2 cut(s) 174, 534
Alw26I GTCTC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 445
Aor13HI TCCGGA 1 cut(s) 303
AoxI GGCC 2 cut(s) 100, 327
ApaI GGGCCC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 4 cut(s) 144, 301, 327, 328
AsuC2I CCSGG 2 cut(s) 148, 269
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 2 cut(s) 144, 301
BaeGI GKGCMC 2 cut(s) 58, 331
BanII GRGCYC 2 cut(s) 331, 446
BccI CCATC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 1 cut(s) 126
BcnI CCSGG 2 cut(s) 148, 269
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 21, 156
BfmI CTRYAG 1 cut(s) 139
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme1390I CCNGG 3 cut(s) 126, 148, 269
Bme18I GGWCC 2 cut(s) 144, 301
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 4 cut(s) 144, 301, 327, 328
BmiI GGNNCC 4 cut(s) 146, 328, 329, 393
BmrFI CCNGG 3 cut(s) 126, 148, 269
BmsI GCATC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 70
BpuMI CCSGG 2 cut(s) 148, 269
BsaJI CCNNGG 3 cut(s) 124, 238, 268
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 6 cut(s) 19, 49, 352, 358, 382, 388
Bse1I ACTGG 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 303
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 124, 238, 268
BseGI GGATG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 53
BseSI GKGCMC 2 cut(s) 58, 331
BshFI GGCC 2 cut(s) 102, 329
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 3 cut(s) 148, 268, 304
BsmAI GTCTC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 2 cut(s) 102, 329
BsoBI CYCGRG 1 cut(s) 445
Bsp120I GGGCCC 1 cut(s) 327
Bsp1286I GDGCHC 3 cut(s) 58, 331, 446
Bsp13I TCCGGA 1 cut(s) 303
BspACI CCGC 1 cut(s) 99
BspANI GGCC 2 cut(s) 102, 329
BspEI TCCGGA 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 146, 328, 329, 393
BspQI GCTCTTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 124, 238, 268
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 3 cut(s) 35, 80, 115
Bst6I CTCTTC 3 cut(s) 164, 240, 344
BstC8I GCNNGC 1 cut(s) 409
BstF5I GGATG 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 3 cut(s) 124, 146, 267
BstSFI CTRYAG 1 cut(s) 139
BstSLI GKGCMC 2 cut(s) 58, 331
BsuRI GGCC 2 cut(s) 102, 329
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 409
Cfr13I GGNCC 4 cut(s) 144, 301, 327, 328
CviJI RGCY 7 cut(s) 102, 174, 329, 427, 444, 450, 534
CviKI_1 RGCY 7 cut(s) 102, 174, 329, 427, 444, 450, 534
Eam1104I CTCTTC 3 cut(s) 164, 240, 344
EarI CTCTTC 3 cut(s) 164, 240, 344
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 2 cut(s) 331, 446
Eco47I GGWCC 2 cut(s) 144, 301
Eco88I CYCGRG 1 cut(s) 445
EcoO109I RGGNCCY 2 cut(s) 144, 327
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 2 cut(s) 331, 446
ErhI CCWWGG 1 cut(s) 238
FaiI YATR 6 cut(s) 120, 141, 208, 210, 413, 434
Fnu4HI GCNGC 1 cut(s) 100
FokI GGATG 1 cut(s) 324
FriOI GRGCYC 2 cut(s) 331, 446
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 2 cut(s) 21, 156
GluI GCNGC 1 cut(s) 100
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 2 cut(s) 102, 329
HapII CCGG 3 cut(s) 148, 268, 304
HinfI GANTC 1 cut(s) 28
HpaII CCGG 3 cut(s) 148, 268, 304
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 3 cut(s) 217, 360, 504
Hpy188III TCNNGA 3 cut(s) 84, 233, 304
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 3 cut(s) 35, 80, 115
HpyCH4V TGCA 3 cut(s) 16, 192, 407
Kpn2I TCCGGA 1 cut(s) 303
LguI GCTCTTC 1 cut(s) 164
LweI GCATC 1 cut(s) 364
MaeI CTAG 2 cut(s) 21, 156
MaeIII GTNAC 2 cut(s) 29, 128
MboII GAAGA 5 cut(s) 181, 256, 257, 319, 361
MhlI GDGCHC 3 cut(s) 58, 331, 446
MluCI AATT 2 cut(s) 273, 332
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 2 cut(s) 344, 365
MnlI CCTC 7 cut(s) 45, 113, 241, 317, 345, 382, 417
MroI TCCGGA 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 3 cut(s) 108, 318, 464
MspI CCGG 3 cut(s) 148, 268, 304
MspR9I CCNGG 3 cut(s) 126, 148, 269
Mva1269I GAATGC 1 cut(s) 488
MvaI CCWGG 1 cut(s) 126
NciI CCSGG 2 cut(s) 148, 269
NlaIV GGNNCC 4 cut(s) 146, 328, 329, 393
NmuCI GTSAC 2 cut(s) 29, 128
PaeR7I CTCGAG 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 164
PctI GAATGC 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PpuMI RGGWCCY 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 4 cut(s) 146, 328, 329, 393
PspOMI GGGCCC 1 cut(s) 327
PspPI GGNCC 4 cut(s) 144, 301, 327, 328
PspPPI RGGWCCY 1 cut(s) 144
PspXI VCTCGAGB 1 cut(s) 445
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 108, 318, 464
SatI GCNGC 1 cut(s) 100
Sau96I GGNCC 4 cut(s) 144, 301, 327, 328
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 3 cut(s) 126, 148, 269
SduI GDGCHC 3 cut(s) 58, 331, 446
SetI ASST 4 cut(s) 176, 303, 393, 536
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 445
SinI GGWCC 2 cut(s) 144, 301
SlaI CTCGAG 1 cut(s) 445
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 2 cut(s) 273, 332
SsiI CCGC 1 cut(s) 99
SspMI CTAG 2 cut(s) 21, 156
StyD4I CCNGG 3 cut(s) 124, 146, 267
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 3 cut(s) 35, 80, 115
TaqI TCGA 4 cut(s) 376, 422, 446, 484
TasI AATT 2 cut(s) 273, 332
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 3 cut(s) 108, 318, 464
Tru9I TTAA 3 cut(s) 108, 318, 464
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 2 cut(s) 29, 128
Tsp45I GTSAC 2 cut(s) 29, 128
TspDTI ATGAA 3 cut(s) 107, 326, 471
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 144, 301
XapI RAATTY 1 cut(s) 273
XhoI CTCGAG 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 21, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.