FvH4_6g47430

EID1-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011042
Physical Location & Seq
Reverse (-)
35939589 .. 35942622
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47430.t1

Sequence Viewer

Length: 747 bp
ATGATTCTCACAAAGCAGTATCGATGTATACATTCTGCAAGCTGTCGATGCACAAAAGGGCATATAAGTGAAGATGCGATATTCTTAGTATTTCAAAATTTGAATTGGAATCCCAAGTTAATTGCAACACTTTCCTGTGTCTGCAAATGGTTTGATGATCTCGCCAAACGTGTACTGTGGAAGGAGTTTTGTAAAACAAGAGCACCAAAGATGATGATTGATTTGCAATCTAGTGGGAGTCACAGTGTAGATGGAAACTGGAGGGCACTTGGGAAGCTGCTTATTTATTGTTCAGGAAGTAAGAAGGGTGGGCTCTTTAACACTGTTCAAATCCCTGGTCACTTTGTCTATAGGACCCGGTTTTCTAGGACATCGGGGAAGAGCTTTCTTCTGCCACAATGTAGAACAGATGTATTGTATGTCTCTGACCCGTGTGAACATCTTGACCAAGGAGAAGAGGGAGATGTGGGGTTCTTCCGGGGAATTTTCAAGTCATTTTCAATGTCCAAGGTCCGGAAGATGTTGATCAAGAGGGGGGCCGAACTTCATCCAACAGAGGTGTGCCCTTATTGTAAGGCCAAGTTGTGGAGCATGTTGCAAGCCAAAATGATACCTCAAAGTGCCAGCTGCAGATTGGGTGCTTATGAGGATTGCATCGAGTATTTTGTTTGCCTCAATGGACATATGCTTGGGATCTGTACTCTGTTACCATTATCTGATTCAGAAGAGGTATCGGAGTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.14

Weight (kDa)

8.77

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15440 AT5G39360
fragaria_vesca FvH4_6g47430 FvH4_6g47430 FvH4_6g47430 FvH4_6g47430
malus_domestica MD09G1061500.v1.1
prunus_persica Prupe.3G258700_v2.0.a1
pyrus_communis pycom08g15040
rosa_chinensis RchiOBHm_Chr2g0166511
rosa_laevigata RLG00000021624
rosa_multiflora Rmu_co8321839.1_g000001
rosa_roxburghii Rroxscaffold_2G00084820
rosa_rugosa Rorug02G0523700 Rorug02G0523800
rosa_samantha Rh2AG589600 Rh2BG601900 Rh2CG572600 Rh2DG612400
rosa_wichuraiana Rw2G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 585
AccI GTMKAC 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 513
AclWI GGATC 1 cut(s) 701
AcsI RAATTY 2 cut(s) 97, 483
AfaI GTAC 2 cut(s) 174, 700
AfiI CCNNNNNNNGG 2 cut(s) 513, 585
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 5 cut(s) 95, 103, 329, 490, 501
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 4 cut(s) 42, 277, 384, 627
AluI AGCT 4 cut(s) 42, 277, 384, 627
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 1 cut(s) 701
Aor13HI TCCGGA 1 cut(s) 513
AoxI GGCC 2 cut(s) 537, 576
ApeKI GCWGC 2 cut(s) 277, 627
ApoI RAATTY 2 cut(s) 97, 483
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspS9I GGNCC 3 cut(s) 354, 511, 537
AsuC2I CCSGG 2 cut(s) 358, 479
AvaII GGWCC 2 cut(s) 354, 511
BaeGI GKGCMC 2 cut(s) 268, 566
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 264, 614
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 525
BcnI CCSGG 2 cut(s) 358, 479
BcoDI GTCTC 1 cut(s) 427
BfaI CTAG 2 cut(s) 231, 366
BfmI CTRYAG 2 cut(s) 349, 628
BisI GCNGC 2 cut(s) 278, 628
BlsI GCNGC 2 cut(s) 279, 629
Bme1390I CCNGG 3 cut(s) 336, 358, 479
Bme18I GGWCC 2 cut(s) 354, 511
BmgT120I GGNCC 3 cut(s) 354, 511, 537
BmiI GGNNCC 2 cut(s) 356, 538
BmrFI CCNGG 3 cut(s) 336, 358, 479
BmsI GCATC 3 cut(s) 38, 64, 663
BpmI CTGGAG 1 cut(s) 280
BpuMI CCSGG 2 cut(s) 358, 479
Bsa29I ATCGAT 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 524
BsaJI CCNNGG 4 cut(s) 334, 448, 478, 507
BsaWI WCCGGW 1 cut(s) 513
BsaXI ACNNNNNCTCC 3 cut(s) 229, 259, 728
Bsc4I CCNNNNNNNGG 2 cut(s) 513, 585
Bse1I ACTGG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 524
BseAI TCCGGA 1 cut(s) 513
BseBI CCWGG 1 cut(s) 336
BseCI ATCGAT 1 cut(s) 22
BseDI CCNNGG 4 cut(s) 334, 448, 478, 507
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 524
BseLI CCNNNNNNNGG 2 cut(s) 513, 585
BseNI ACTGG 1 cut(s) 263
BseSI GKGCMC 2 cut(s) 268, 566
BseXI GCAGC 2 cut(s) 264, 614
BshFI GGCC 2 cut(s) 539, 578
BshVI ATCGAT 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 3 cut(s) 358, 478, 514
BslI CCNNNNNNNGG 2 cut(s) 513, 585
BsmAI GTCTC 1 cut(s) 427
BsnI GGCC 2 cut(s) 539, 578
Bsp1286I GDGCHC 4 cut(s) 205, 268, 315, 566
Bsp13I TCCGGA 1 cut(s) 513
Bsp143I GATC 3 cut(s) 157, 525, 693
BspANI GGCC 2 cut(s) 539, 578
BspDI ATCGAT 1 cut(s) 22
BspEI TCCGGA 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 356, 538
BspMAI CTGCAG 1 cut(s) 632
BspPI GGATC 1 cut(s) 701
BspQI GCTCTTC 1 cut(s) 374
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 334, 448, 478, 507
BssMI GATC 3 cut(s) 157, 525, 693
BssNAI GTATAC 1 cut(s) 29
BssT1I CCWWGG 2 cut(s) 448, 507
Bst1107I GTATAC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 3 cut(s) 177, 245, 325
Bst6I CTCTTC 3 cut(s) 374, 450, 720
BstC8I GCNNGC 3 cut(s) 40, 600, 625
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 547
BstKTI GATC 3 cut(s) 160, 528, 696
BstMAI GTCTC 1 cut(s) 427
BstMBI GATC 3 cut(s) 157, 525, 693
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 3 cut(s) 334, 356, 477
BstSFI CTRYAG 2 cut(s) 349, 628
BstSLI GKGCMC 2 cut(s) 268, 566
BstV1I GCAGC 2 cut(s) 264, 614
BstX2I RGATCY 1 cut(s) 693
BstYI RGATCY 1 cut(s) 693
BstZ17I GTATAC 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 22
BsuRI GGCC 2 cut(s) 539, 578
BsuTUI ATCGAT 1 cut(s) 22
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 2 cut(s) 250, 321
Cac8I GCNNGC 3 cut(s) 40, 600, 625
Cfr13I GGNCC 3 cut(s) 354, 511, 537
ClaI ATCGAT 1 cut(s) 22
Csp6I GTAC 2 cut(s) 173, 699
CviAII CATG 1 cut(s) 592
CviJI RGCY 8 cut(s) 42, 277, 313, 384, 539, 578, 602, 627
CviKI_1 RGCY 8 cut(s) 42, 277, 313, 384, 539, 578, 602, 627
CviQI GTAC 2 cut(s) 173, 699
DdeI CTNAG 1 cut(s) 85
DpnI GATC 3 cut(s) 159, 527, 695
DpnII GATC 3 cut(s) 157, 525, 693
Eam1104I CTCTTC 3 cut(s) 374, 450, 720
EarI CTCTTC 3 cut(s) 374, 450, 720
Eco130I CCWWGG 2 cut(s) 448, 507
Eco24I GRGCYC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 354, 511
EcoO109I RGGNCCY 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 448, 507
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 2 cut(s) 448, 507
FaeI CATG 1 cut(s) 595
FaiI YATR 9 cut(s) 29, 63, 65, 351, 420, 593, 645, 684, 686
FatI CATG 1 cut(s) 591
FauNDI CATATG 1 cut(s) 684
FbaI TGATCA 1 cut(s) 525
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 278, 628
FokI GGATG 1 cut(s) 534
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 2 cut(s) 278, 628
FspBI CTAG 2 cut(s) 231, 366
GluI GCNGC 2 cut(s) 278, 628
GsuI CTGGAG 1 cut(s) 280
HaeIII GGCC 2 cut(s) 539, 578
HapII CCGG 3 cut(s) 358, 478, 514
Hin1II CATG 1 cut(s) 595
HinfI GANTC 4 cut(s) 4, 109, 238, 719
HpaII CCGG 3 cut(s) 358, 478, 514
Hpy166II GTNNAC 3 cut(s) 29, 173, 437
Hpy188I TCNGA 4 cut(s) 427, 718, 724, 736
Hpy188III TCNNGA 4 cut(s) 294, 443, 514, 529
Hpy8I GTNNAC 3 cut(s) 29, 173, 437
HpyAV CCTTC 2 cut(s) 175, 298
HpyCH4III ACNGT 3 cut(s) 177, 245, 325
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 8 cut(s) 38, 51, 125, 144, 226, 598, 630, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpyF3I CTNAG 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 595
Kpn2I TCCGGA 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 525
Kzo9I GATC 3 cut(s) 157, 525, 693
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 1 cut(s) 588
LpnPI CCDG 9 cut(s) 148, 244, 279, 321, 348, 371, 491, 527, 637
Lsp1109I GCAGC 2 cut(s) 264, 614
LweI GCATC 3 cut(s) 38, 64, 663
MaeI CTAG 2 cut(s) 231, 366
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 3 cut(s) 239, 338, 705
MalI GATC 3 cut(s) 159, 527, 695
MboI GATC 3 cut(s) 157, 525, 693
MboII GAAGA 7 cut(s) 83, 380, 391, 466, 467, 529, 737
MflI RGATCY 1 cut(s) 693
MhlI GDGCHC 4 cut(s) 205, 268, 315, 566
MluCI AATT 4 cut(s) 97, 103, 120, 483
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 2 cut(s) 575, 720
MnlI CCTC 8 cut(s) 255, 451, 525, 550, 624, 640, 683, 721
MroI TCCGGA 1 cut(s) 513
MseI TTAA 2 cut(s) 119, 318
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 3 cut(s) 358, 478, 514
MspR9I CCNGG 3 cut(s) 336, 358, 479
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 48
NciI CCSGG 2 cut(s) 358, 479
NdeI CATATG 1 cut(s) 684
NdeII GATC 3 cut(s) 157, 525, 693
NlaIII CATG 1 cut(s) 595
NlaIV GGNNCC 2 cut(s) 356, 538
NmuCI GTSAC 2 cut(s) 239, 338
NspI RCATGY 1 cut(s) 595
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 4, 109, 719
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 2 cut(s) 279, 629
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PpuMI RGGWCCY 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 356, 538
PspPI GGNCC 3 cut(s) 354, 511, 537
PspPPI RGGWCCY 1 cut(s) 354
PstI CTGCAG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 693
PvuII CAGCTG 1 cut(s) 627
RsaI GTAC 2 cut(s) 174, 700
RsaNI GTAC 2 cut(s) 173, 699
RseI CAYNNNNRTG 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 119, 318
SatI GCNGC 2 cut(s) 278, 628
Sau3AI GATC 3 cut(s) 157, 525, 693
Sau96I GGNCC 3 cut(s) 354, 511, 537
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 336, 358, 479
SduI GDGCHC 4 cut(s) 205, 268, 315, 566
SetI ASST 9 cut(s) 44, 172, 279, 386, 513, 561, 616, 629, 732
SfaNI GCATC 3 cut(s) 38, 64, 663
SfcI CTRYAG 2 cut(s) 349, 628
SinI GGWCC 2 cut(s) 354, 511
SmiMI CAYNNNNRTG 1 cut(s) 66
Sse9I AATT 4 cut(s) 97, 103, 120, 483
SspMI CTAG 2 cut(s) 231, 366
StyD4I CCNGG 3 cut(s) 334, 356, 477
StyI CCWWGG 2 cut(s) 448, 507
TaaI ACNGT 3 cut(s) 177, 245, 325
TaiI ACGT 1 cut(s) 172
TaqI TCGA 3 cut(s) 22, 46, 657
TasI AATT 4 cut(s) 97, 103, 120, 483
TatI WGTACW 2 cut(s) 172, 698
TfiI GAWTC 3 cut(s) 4, 109, 719
Tru1I TTAA 2 cut(s) 119, 318
Tru9I TTAA 2 cut(s) 119, 318
TscAI CASTG 2 cut(s) 250, 328
TseFI GTSAC 2 cut(s) 239, 338
TseI GCWGC 2 cut(s) 277, 627
Tsp45I GTSAC 2 cut(s) 239, 338
TspDTI ATGAA 1 cut(s) 536
TspRI CASTG 2 cut(s) 250, 328
Van91I CCANNNNNTGG 1 cut(s) 585
VpaK11BI GGWCC 2 cut(s) 354, 511
XapI RAATTY 2 cut(s) 97, 483
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 2 cut(s) 231, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.