Prupe.3G258700_v2.0.a1

EID1-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011042
Physical Location & Seq
Reverse (-)
24559457 .. 24562111
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G258700.1

Sequence Viewer

Length: 747 bp
ATGATTCTTACAAAGCAGTATCGTTGCATACACTCAACAAGCTGTCAATGCACAAAAGGGCATCTAAGTGAAGATGCAATATTCCTAGTATTCCAGCAGTTGAATTGGAATCCTAAGTTAATTGCTACACTTTCTTGTGTCTGCAAATGGTTTGATGATCTCGCCAAGCGTGTACTGTGGAAGGAATTTTGCCGAACAAGAGCACCAAAGATGATGATTGATCTTCAATCTAGTGGGAGTCACAGTGTAGATGGGAACTGGAGGGCACTCGGGAAGCTGCTTATTTACTGTACAGGATCTAAGAAGGGTGGCCTCTTTAATACCATTCAAATCCCTGGTCACTTTGTTTATAGGACCAGGTTCTCTAGGACATCTGGGAAGAGCTTTCTCTTGCCACAATGCAGAACAGATGTTTTGTATGTGTCTGATCCCTGTGAACATCTTGACCAAGGTGAAGAGGGGGATGTTGGTTTTTTCCGCGGAGTCTTCAAGTCATTCTCAATGTCAAAGGTTCGGAAGATGTTGATTAAGAAGGAGGCCCAACTTCATCCAACAGAGGTGTGCCCTTACTGCAAAGCTAAGTTATGGAGCATGTTGCAAGCCAAAATGATACCGCAGAGTGCCAGCTGCAGATTGGGAGCTTATGAGGATTGCATTGAGTATTTTGTTTGCCTTAATGGACATATGCTTGGGATCTGTACCCTGCTACCTCTATCTGATTCAGAAGAGGCATCAGAGTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.19

Weight (kDa)

8.68

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15440 AT5G39360
fragaria_vesca FvH4_6g47430 FvH4_6g47430 FvH4_6g47430 FvH4_6g47430
malus_domestica MD09G1061500.v1.1
prunus_persica Prupe.3G258700_v2.0.a1
pyrus_communis pycom08g15040
rosa_chinensis RchiOBHm_Chr2g0166511
rosa_laevigata RLG00000021624
rosa_multiflora Rmu_co8321839.1_g000001
rosa_roxburghii Rroxscaffold_2G00084820
rosa_rugosa Rorug02G0523700 Rorug02G0523800
rosa_samantha Rh2AG589600 Rh2BG601900 Rh2CG572600 Rh2DG612400
rosa_wichuraiana Rw2G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 480
AciI CCGC 3 cut(s) 478, 480, 614
AclWI GGATC 3 cut(s) 304, 422, 701
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 3 cut(s) 174, 292, 700
AgsI TTSAA 4 cut(s) 103, 227, 329, 490
AjnI CCWGG 2 cut(s) 334, 356
AluBI AGCT 6 cut(s) 42, 277, 384, 578, 627, 641
AluI AGCT 6 cut(s) 42, 277, 384, 578, 627, 641
Alw21I GWGCWC 1 cut(s) 205
AlwI GGATC 3 cut(s) 304, 422, 701
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 310, 537
ApeKI GCWGC 2 cut(s) 277, 627
ApoI RAATTY 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspS9I GGNCC 2 cut(s) 354, 538
AsuHPI GGTGA 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 2 cut(s) 268, 566
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 264, 614
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 336, 358
BfaI CTAG 3 cut(s) 86, 231, 366
BfmI CTRYAG 1 cut(s) 628
BisI GCNGC 2 cut(s) 278, 628
BlsI GCNGC 2 cut(s) 279, 629
Bme1390I CCNGG 2 cut(s) 336, 358
Bme18I GGWCC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 354, 538
BmrFI CCNGG 2 cut(s) 336, 358
BmsI GCATC 3 cut(s) 64, 70, 740
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 280
BsaJI CCNNGG 3 cut(s) 334, 448, 478
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bse1I ACTGG 1 cut(s) 263
BseBI CCWGG 2 cut(s) 336, 358
BseDI CCNNGG 3 cut(s) 334, 448, 478
BseGI GGATG 2 cut(s) 469, 547
BseNI ACTGG 1 cut(s) 263
BseSI GKGCMC 2 cut(s) 268, 566
BseXI GCAGC 2 cut(s) 264, 614
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 2 cut(s) 312, 539
BsiHKAI GWGCWC 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 269
BsnI GGCC 2 cut(s) 312, 539
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 3 cut(s) 205, 268, 566
Bsp1407I TGTACA 1 cut(s) 290
Bsp143I GATC 5 cut(s) 157, 220, 296, 427, 693
BspACI CCGC 3 cut(s) 478, 480, 614
BspANI GGCC 2 cut(s) 312, 539
BspFNI CGCG 1 cut(s) 480
BspMAI CTGCAG 1 cut(s) 632
BspPI GGATC 3 cut(s) 304, 422, 701
BspQI GCTCTTC 1 cut(s) 374
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 3 cut(s) 334, 448, 478
BssMI GATC 5 cut(s) 157, 220, 296, 427, 693
BssT1I CCWWGG 1 cut(s) 448
Bst2UI CCWGG 2 cut(s) 336, 358
Bst4CI ACNGT 3 cut(s) 177, 245, 290
Bst6I CTCTTC 3 cut(s) 374, 450, 720
BstAUI TGTACA 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 600, 625
BstDEI CTNAG 4 cut(s) 65, 114, 300, 579
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 469, 547
BstFNI CGCG 1 cut(s) 480
BstKTI GATC 5 cut(s) 160, 223, 299, 430, 696
BstMBI GATC 5 cut(s) 157, 220, 296, 427, 693
BstMWI GCNNNNNNNGC 2 cut(s) 48, 570
BstNI CCWGG 2 cut(s) 336, 358
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 2 cut(s) 334, 356
BstSFI CTRYAG 1 cut(s) 628
BstSLI GKGCMC 2 cut(s) 268, 566
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 2 cut(s) 264, 614
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 2 cut(s) 296, 693
BstYI RGATCY 2 cut(s) 296, 693
BsuRI GGCC 2 cut(s) 312, 539
BtgI CCRYGG 1 cut(s) 478
BtsCI GGATG 2 cut(s) 469, 547
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 600, 625
Cfr13I GGNCC 2 cut(s) 354, 538
Cfr42I CCGCGG 1 cut(s) 481
CsiI ACCWGGT 1 cut(s) 356
Csp6I GTAC 3 cut(s) 173, 291, 699
CviAII CATG 1 cut(s) 592
CviJI RGCY 9 cut(s) 42, 277, 312, 384, 539, 578, 602, 627, 641
CviKI_1 RGCY 9 cut(s) 42, 277, 312, 384, 539, 578, 602, 627, 641
CviQI GTAC 3 cut(s) 173, 291, 699
DdeI CTNAG 4 cut(s) 65, 114, 300, 579
DpnI GATC 5 cut(s) 159, 222, 298, 429, 695
DpnII GATC 5 cut(s) 157, 220, 296, 427, 693
Eam1104I CTCTTC 3 cut(s) 374, 450, 720
EarI CTCTTC 3 cut(s) 374, 450, 720
Eco130I CCWWGG 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 334, 356
EcoT14I CCWWGG 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 1 cut(s) 595
FaiI YATR 8 cut(s) 29, 351, 420, 586, 593, 645, 684, 686
FatI CATG 1 cut(s) 591
FauNDI CATATG 1 cut(s) 684
Fnu4HI GCNGC 2 cut(s) 278, 628
FokI GGATG 2 cut(s) 476, 534
Fsp4HI GCNGC 2 cut(s) 278, 628
FspBI CTAG 3 cut(s) 86, 231, 366
GluI GCNGC 2 cut(s) 278, 628
GsuI CTGGAG 1 cut(s) 280
HaeIII GGCC 2 cut(s) 312, 539
Hin1II CATG 1 cut(s) 595
HinfI GANTC 5 cut(s) 4, 109, 238, 483, 719
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 2 cut(s) 173, 437
Hpy188I TCNGA 5 cut(s) 427, 516, 718, 724, 736
Hpy188III TCNNGA 2 cut(s) 271, 443
Hpy8I GTNNAC 2 cut(s) 173, 437
HpyAV CCTTC 3 cut(s) 175, 298, 526
HpyCH4III ACNGT 3 cut(s) 177, 245, 290
HpyCH4V TGCA 9 cut(s) 27, 51, 77, 144, 402, 573, 598, 630, 654
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 570
HpyF3I CTNAG 4 cut(s) 65, 114, 300, 579
Hsp92II CATG 1 cut(s) 595
KspI CCGCGG 1 cut(s) 481
Kzo9I GATC 5 cut(s) 157, 220, 296, 427, 693
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 2 cut(s) 588, 638
Lsp1109I GCAGC 2 cut(s) 264, 614
LweI GCATC 3 cut(s) 64, 70, 740
MabI ACCWGGT 1 cut(s) 356
MaeI CTAG 3 cut(s) 86, 231, 366
MaeIII GTNAC 2 cut(s) 239, 338
MalI GATC 5 cut(s) 159, 222, 298, 429, 695
MboI GATC 5 cut(s) 157, 220, 296, 427, 693
MboII GAAGA 7 cut(s) 83, 215, 391, 467, 478, 529, 737
MflI RGATCY 2 cut(s) 296, 693
MhlI GDGCHC 3 cut(s) 205, 268, 566
MluCI AATT 3 cut(s) 103, 120, 185
MlyI GAGTC 2 cut(s) 247, 492
MmeI TCCRAC 2 cut(s) 575, 720
MnlI CCTC 8 cut(s) 255, 323, 451, 529, 550, 640, 720, 721
MseI TTAA 4 cut(s) 119, 318, 528, 675
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 2 cut(s) 480, 627
MspR9I CCNGG 2 cut(s) 336, 358
MvaI CCWGG 2 cut(s) 336, 358
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 48, 570
NdeI CATATG 1 cut(s) 684
NdeII GATC 5 cut(s) 157, 220, 296, 427, 693
NlaIII CATG 1 cut(s) 595
NmuCI GTSAC 2 cut(s) 239, 338
NspI RCATGY 1 cut(s) 595
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 4, 109, 719
PkrI GCNGC 2 cut(s) 279, 629
PleI GAGTC 2 cut(s) 246, 491
PpsI GAGTC 2 cut(s) 246, 491
Psp6I CCWGG 2 cut(s) 334, 356
PspGI CCWGG 2 cut(s) 334, 356
PspPI GGNCC 2 cut(s) 354, 538
PstI CTGCAG 1 cut(s) 632
PsuI RGATCY 2 cut(s) 296, 693
PvuII CAGCTG 1 cut(s) 627
RsaI GTAC 3 cut(s) 174, 292, 700
RsaNI GTAC 3 cut(s) 173, 291, 699
RseI CAYNNNNRTG 1 cut(s) 66
SacII CCGCGG 1 cut(s) 481
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 4 cut(s) 119, 318, 528, 675
SatI GCNGC 2 cut(s) 278, 628
Sau3AI GATC 5 cut(s) 157, 220, 296, 427, 693
Sau96I GGNCC 2 cut(s) 354, 538
SchI GAGTC 2 cut(s) 247, 492
ScrFI CCNGG 2 cut(s) 336, 358
SduI GDGCHC 3 cut(s) 205, 268, 566
SexAI ACCWGGT 1 cut(s) 356
SfaNI GCATC 3 cut(s) 64, 70, 740
SfcI CTRYAG 1 cut(s) 628
Sfr303I CCGCGG 1 cut(s) 481
SgrBI CCGCGG 1 cut(s) 481
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 66
Sse9I AATT 3 cut(s) 103, 120, 185
SsiI CCGC 3 cut(s) 478, 480, 614
SspI AATATT 1 cut(s) 81
SspMI CTAG 3 cut(s) 86, 231, 366
StyD4I CCNGG 2 cut(s) 334, 356
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 177, 245, 290
TasI AATT 3 cut(s) 103, 120, 185
TatI WGTACW 2 cut(s) 172, 290
TfiI GAWTC 3 cut(s) 4, 109, 719
Tru1I TTAA 4 cut(s) 119, 318, 528, 675
Tru9I TTAA 4 cut(s) 119, 318, 528, 675
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 239, 338
TseI GCWGC 2 cut(s) 277, 627
Tsp45I GTSAC 2 cut(s) 239, 338
TspDTI ATGAA 1 cut(s) 536
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 354
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XspI CTAG 3 cut(s) 86, 231, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.