Rmu_co8321839.1_g000001

EID1-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8321839.1
OG0011042
Physical Location & Seq
Reverse (-)
2 .. 423
422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8321839.1_g000001.1.cds

Sequence Viewer

Length: 422 bp
atgatgattgatttgcaatctagtgggagtcacagtgtagatggaaactggagggcacttggaaaactgcttatttactgttcaggaagtaagaagggcggcctctttaataccgttcatatccctggtcactttgtctataggaccaggttttctaggacatcggggaagagcttccttttgccacaatgcagaacagatgtattgtatgtctctgacccgtgtgaacatcttgaccaaggagaagagggagatgtgggtttcttccggggaattttcaagtcgttctcaatgtcaaaggtccggaagatgttgattaaaagagaggcccaatttcatccaacagaggtgtgcccttactgtaaggccaagttgtggagcatgttgcaagccaaaatgatacctcaaagtgccagctgcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.8

Weight (kDa)

9.36

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15440 AT5G39360
fragaria_vesca FvH4_6g47430 FvH4_6g47430 FvH4_6g47430 FvH4_6g47430
malus_domestica MD09G1061500.v1.1
prunus_persica Prupe.3G258700_v2.0.a1
pyrus_communis pycom08g15040
rosa_chinensis RchiOBHm_Chr2g0166511
rosa_laevigata RLG00000021624
rosa_multiflora Rmu_co8321839.1_g000001
rosa_roxburghii Rroxscaffold_2G00084820
rosa_rugosa Rorug02G0523700 Rorug02G0523800
rosa_samantha Rh2AG589600 Rh2BG601900 Rh2CG572600 Rh2DG612400
rosa_wichuraiana Rw2G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 375
AccIII TCCGGA 1 cut(s) 303
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 2 cut(s) 124, 146
AluBI AGCT 2 cut(s) 174, 417
AluI AGCT 2 cut(s) 174, 417
Alw26I GTCTC 1 cut(s) 217
Aor13HI TCCGGA 1 cut(s) 303
AoxI GGCC 3 cut(s) 100, 327, 366
ApeKI GCWGC 1 cut(s) 417
ApoI RAATTY 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 144, 301, 328
AsuC2I CCSGG 1 cut(s) 269
AvaII GGWCC 2 cut(s) 144, 301
BaeGI GKGCMC 2 cut(s) 58, 356
BbvI GCAGC 1 cut(s) 404
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 126, 148
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 2 cut(s) 21, 156
BfmI CTRYAG 2 cut(s) 139, 418
BisI GCNGC 2 cut(s) 100, 418
BlsI GCNGC 2 cut(s) 101, 419
Bme1390I CCNGG 3 cut(s) 126, 148, 269
Bme18I GGWCC 2 cut(s) 144, 301
BmgT120I GGNCC 3 cut(s) 144, 301, 328
BmrFI CCNGG 3 cut(s) 126, 148, 269
BpmI CTGGAG 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 124, 238, 268
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 303
BseBI CCWGG 2 cut(s) 126, 148
BseDI CCNNGG 3 cut(s) 124, 238, 268
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 53
BseSI GKGCMC 2 cut(s) 58, 356
BseXI GCAGC 1 cut(s) 404
BshFI GGCC 3 cut(s) 102, 329, 368
BsiSI CCGG 2 cut(s) 268, 304
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 217
BsnI GGCC 3 cut(s) 102, 329, 368
Bsp1286I GDGCHC 2 cut(s) 58, 356
Bsp13I TCCGGA 1 cut(s) 303
BspACI CCGC 1 cut(s) 99
BspANI GGCC 3 cut(s) 102, 329, 368
BspEI TCCGGA 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 124, 238, 268
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 2 cut(s) 126, 148
Bst4CI ACNGT 4 cut(s) 35, 80, 115, 362
Bst6I CTCTTC 2 cut(s) 164, 240
BstC8I GCNNGC 2 cut(s) 390, 415
BstF5I GGATG 1 cut(s) 337
BstMAI GTCTC 1 cut(s) 217
BstNI CCWGG 2 cut(s) 126, 148
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 124, 146, 267
BstSFI CTRYAG 2 cut(s) 139, 418
BstSLI GKGCMC 2 cut(s) 58, 356
BstV1I GCAGC 1 cut(s) 404
BsuRI GGCC 3 cut(s) 102, 329, 368
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 390, 415
Cfr13I GGNCC 3 cut(s) 144, 301, 328
CsiI ACCWGGT 1 cut(s) 146
CviAII CATG 1 cut(s) 382
CviJI RGCY 6 cut(s) 102, 174, 329, 368, 392, 417
CviKI_1 RGCY 6 cut(s) 102, 174, 329, 368, 392, 417
Eam1104I CTCTTC 2 cut(s) 164, 240
EarI CTCTTC 2 cut(s) 164, 240
Eco130I CCWWGG 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 144, 301
EcoRII CCWGG 2 cut(s) 124, 146
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 1 cut(s) 385
FaiI YATR 4 cut(s) 120, 141, 210, 383
FatI CATG 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 100, 418
FokI GGATG 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 100, 418
FspBI CTAG 2 cut(s) 21, 156
GluI GCNGC 2 cut(s) 100, 418
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 3 cut(s) 102, 329, 368
HapII CCGG 2 cut(s) 268, 304
Hin1II CATG 1 cut(s) 385
HinfI GANTC 1 cut(s) 28
HpaII CCGG 2 cut(s) 268, 304
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 3 cut(s) 84, 233, 304
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 4 cut(s) 35, 80, 115, 362
HpyCH4V TGCA 4 cut(s) 16, 192, 388, 420
Hsp92II CATG 1 cut(s) 385
Kpn2I TCCGGA 1 cut(s) 303
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 8 cut(s) 34, 69, 111, 133, 138, 160, 281, 317
Lsp1109I GCAGC 1 cut(s) 404
MabI ACCWGGT 1 cut(s) 146
MaeI CTAG 2 cut(s) 21, 156
MaeIII GTNAC 2 cut(s) 29, 128
MboII GAAGA 4 cut(s) 181, 256, 257, 319
MhlI GDGCHC 2 cut(s) 58, 356
MluCI AATT 2 cut(s) 273, 332
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 6 cut(s) 45, 113, 241, 319, 340, 414
MroI TCCGGA 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 2 cut(s) 108, 318
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 2 cut(s) 268, 304
MspR9I CCNGG 3 cut(s) 126, 148, 269
MvaI CCWGG 2 cut(s) 126, 148
NciI CCSGG 1 cut(s) 269
NlaIII CATG 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 29, 128
NspI RCATGY 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 375
PkrI GCNGC 2 cut(s) 101, 419
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 124, 146
PspGI CCWGG 2 cut(s) 124, 146
PspPI GGNCC 3 cut(s) 144, 301, 328
PstI CTGCAG 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 417
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 108, 318
SatI GCNGC 2 cut(s) 100, 418
Sau96I GGNCC 3 cut(s) 144, 301, 328
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 3 cut(s) 126, 148, 269
SduI GDGCHC 2 cut(s) 58, 356
SetI ASST 6 cut(s) 152, 176, 303, 351, 406, 419
SexAI ACCWGGT 1 cut(s) 146
SfcI CTRYAG 2 cut(s) 139, 418
SinI GGWCC 2 cut(s) 144, 301
Sse9I AATT 2 cut(s) 273, 332
SsiI CCGC 1 cut(s) 99
SspMI CTAG 2 cut(s) 21, 156
StyD4I CCNGG 3 cut(s) 124, 146, 267
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 4 cut(s) 35, 80, 115, 362
TasI AATT 2 cut(s) 273, 332
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 2 cut(s) 108, 318
Tru9I TTAA 2 cut(s) 108, 318
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 2 cut(s) 29, 128
TseI GCWGC 1 cut(s) 417
Tsp45I GTSAC 2 cut(s) 29, 128
TspDTI ATGAA 2 cut(s) 107, 326
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 375
VpaK11BI GGWCC 2 cut(s) 144, 301
XapI RAATTY 1 cut(s) 273
XceI RCATGY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 2 cut(s) 21, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.