pycom08g15040

EID1-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011042
Physical Location & Seq
Forward (+)
14530286 .. 14531309
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g15040.2

Sequence Viewer

Length: 975 bp
ATGTTTATCAGGAAAGTTATAGACGAGATCACGAGAAAACTGAAGAATCGTGACGAGAGCACGAGAGAACTGAAGAATCATGACGAGATCACGAGAAAACTGAAGAATCGTTGCATACACTCAGCAAGTTATCAATGCACGAAAGGGCTTTTAAATGCAGATGTGATATTCCTTGTATTCCGACAGTTGAATTGGAATCCTAAGTTGATTGCTACACTTTCCCTTGTTTGCAAATGGATTGATGATCTCGCCAAGCGTGTGCTGTGGAAGGAATTTTGCCGAACAAGAGCACCAAATATGATGCTTGACCTTCAATCTAGTGGGAGTCACTGTGTAGATGGGAACTGGAGGGTACTCGGGAAGCTGCTTATTTACTGTGGAGGATCTTTGAAGGGTGGCCTCTTTAACGGCATTCAAATCCCGGGTCACTTTGTTTATAGGACCAGGTTTTCTAAGACATCGGGGAAGAGCTTTCTTTTACCGCAATGCAGAAGAGATGTTTTGTATGTCTCTGACCCTTGTGAACATCTTGGCCAAGGGGAAGAGGGATATGTGGGTTTTTTTCGCGGAGTTTTCATGTCCTTCTCGATGTCCAAGGTTCGGGAGATGTTGATTAAGAAAAGGGCCCAACTTCATCCGACAGATGTGTGCCCTTACTCGCCAGCTGCAGATTGGGAGCTTTTGACGATTGCATCGAGTATTTTGTTTGCCTCAGTGGACATATGCTTGGGATCTGTAACCTGCTACCTTTATCTGATTCAGAAGAAGGACGAAAGGTTAGAGTGCCAGTTAAAATTAGGGGTAGGCAAACGGGTCGAGACGGGTCCATGCTGTTCGGGGATAGTAATGAGCAGGTTGACATATCTAAGAAAACGAGCACTCTCAGTCTCCCACTCGGACCAAAATTTGCAGCGCAGACGAGCTCCGTCCACCGATCGTGGTGTCTTGGAAGTAATGATGATGAATCATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

37.05

Weight (kDa)

9.48

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15440 AT5G39360
fragaria_vesca FvH4_6g47430 FvH4_6g47430 FvH4_6g47430 FvH4_6g47430
malus_domestica MD09G1061500.v1.1
prunus_persica Prupe.3G258700_v2.0.a1
pyrus_communis pycom08g15040
rosa_chinensis RchiOBHm_Chr2g0166511
rosa_laevigata RLG00000021624
rosa_multiflora Rmu_co8321839.1_g000001
rosa_roxburghii Rroxscaffold_2G00084820
rosa_rugosa Rorug02G0523700 Rorug02G0523800
rosa_samantha Rh2AG589600 Rh2BG601900 Rh2CG572600 Rh2DG612400
rosa_wichuraiana Rw2G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 749, 843
AccII CGCG 1 cut(s) 567
AciI CCGC 2 cut(s) 482, 567
AclWI GGATC 2 cut(s) 391, 739
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 2 cut(s) 272, 904
AcuI CTGAAG 3 cut(s) 62, 92, 122
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 600
AgsI TTSAA 4 cut(s) 190, 314, 391, 416
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 5 cut(s) 364, 471, 665, 679, 923
AluI AGCT 5 cut(s) 364, 471, 665, 679, 923
Alw21I GWGCWC 4 cut(s) 62, 292, 880, 925
Alw26I GTCTC 3 cut(s) 514, 812, 892
AlwI GGATC 2 cut(s) 391, 739
Ama87I CYCGRG 2 cut(s) 356, 421
AoxI GGCC 3 cut(s) 397, 532, 624
ApaI GGGCCC 1 cut(s) 628
ApeKI GCWGC 3 cut(s) 364, 665, 910
ApoI RAATTY 2 cut(s) 272, 904
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AspLEI GCGC 1 cut(s) 915
AspS9I GGNCC 5 cut(s) 441, 624, 625, 824, 898
AsuC2I CCSGG 2 cut(s) 422, 423
AvaI CYCGRG 2 cut(s) 356, 421
AvaII GGWCC 3 cut(s) 441, 824, 898
BaeGI GKGCMC 2 cut(s) 628, 653
BalI TGGCCA 1 cut(s) 534
BanII GRGCYC 2 cut(s) 628, 925
BauI CACGAG 3 cut(s) 31, 61, 91
Bbv12I GWGCWC 4 cut(s) 62, 292, 880, 925
BbvI GCAGC 3 cut(s) 351, 652, 922
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 424
BcgI CGANNNNNNTGC 2 cut(s) 796, 830
BciT130I CCWGG 1 cut(s) 445
BcnI CCSGG 2 cut(s) 422, 423
BcoDI GTCTC 3 cut(s) 514, 812, 892
BfaI CTAG 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 666
BfuAI ACCTGC 2 cut(s) 749, 843
BisI GCNGC 3 cut(s) 365, 666, 911
BlsI GCNGC 3 cut(s) 366, 667, 912
Bme1390I CCNGG 3 cut(s) 422, 423, 445
Bme18I GGWCC 3 cut(s) 441, 824, 898
BmeT110I CYCGRG 2 cut(s) 356, 421
BmgT120I GGNCC 5 cut(s) 441, 624, 625, 824, 898
BmiI GGNNCC 2 cut(s) 626, 825
BmrFI CCNGG 3 cut(s) 422, 423, 445
BmsI GCATC 2 cut(s) 291, 701
BpmI CTGGAG 1 cut(s) 367
BpuMI CCSGG 2 cut(s) 422, 423
BsaJI CCNNGG 3 cut(s) 421, 535, 594
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse1I ACTGG 2 cut(s) 350, 787
Bse3DI GCAATG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 3 cut(s) 421, 535, 594
BseGI GGATG 1 cut(s) 634
BseLI CCNNNNNNNGG 1 cut(s) 600
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 3 cut(s) 135, 726, 897
BseNI ACTGG 2 cut(s) 350, 787
BseSI GKGCMC 2 cut(s) 628, 653
BseXI GCAGC 3 cut(s) 351, 652, 922
Bsh1236I CGCG 1 cut(s) 567
Bsh1285I CGRYCG 1 cut(s) 937
BshFI GGCC 3 cut(s) 399, 534, 626
BsiEI CGRYCG 1 cut(s) 937
BsiHKAI GWGCWC 4 cut(s) 62, 292, 880, 925
BsiHKCI CYCGRG 2 cut(s) 356, 421
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 3 cut(s) 514, 812, 892
BsmBI CGTCTC 1 cut(s) 812
BsmI GAATGC 1 cut(s) 411
BsnI GGCC 3 cut(s) 399, 534, 626
BsoBI CYCGRG 2 cut(s) 356, 421
Bsp120I GGGCCC 1 cut(s) 624
Bsp1286I GDGCHC 6 cut(s) 62, 292, 628, 653, 880, 925
Bsp143I GATC 6 cut(s) 27, 87, 244, 383, 731, 934
BspACI CCGC 2 cut(s) 482, 567
BspANI GGCC 3 cut(s) 399, 534, 626
BspCNI CTCAG 3 cut(s) 134, 725, 896
BspFNI CGCG 1 cut(s) 567
BspHI TCATGA 2 cut(s) 79, 967
BspLI GGNNCC 2 cut(s) 626, 825
BspMAI CTGCAG 1 cut(s) 670
BspMI ACCTGC 2 cut(s) 749, 843
BspPI GGATC 2 cut(s) 391, 739
BspQI GCTCTTC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 491
BsrI ACTGG 2 cut(s) 350, 787
BssECI CCNNGG 3 cut(s) 421, 535, 594
BssMI GATC 6 cut(s) 27, 87, 244, 383, 731, 934
BssSI CACGAG 3 cut(s) 31, 61, 91
BssT1I CCWWGG 2 cut(s) 535, 594
Bst2BI CACGAG 3 cut(s) 31, 61, 91
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 3 cut(s) 186, 332, 377
Bst6I CTCTTC 3 cut(s) 461, 487, 537
BstC8I GCNNGC 1 cut(s) 663
BstDEI CTNAG 6 cut(s) 121, 201, 453, 712, 866, 883
BstF5I GGATG 1 cut(s) 634
BstFNI CGCG 1 cut(s) 567
BstHHI GCGC 1 cut(s) 915
BstKTI GATC 6 cut(s) 30, 90, 247, 386, 734, 937
BstMAI GTCTC 3 cut(s) 514, 812, 892
BstMBI GATC 6 cut(s) 27, 87, 244, 383, 731, 934
BstMCI CGRYCG 1 cut(s) 937
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 3 cut(s) 420, 421, 443
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 2 cut(s) 628, 653
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 3 cut(s) 351, 652, 922
BstX2I RGATCY 2 cut(s) 383, 731
BstYI RGATCY 2 cut(s) 383, 731
BsuRI GGCC 3 cut(s) 399, 534, 626
BtsCI GGATG 1 cut(s) 634
BtsIMutI CAGTG 2 cut(s) 328, 720
BveI ACCTGC 2 cut(s) 749, 843
Cac8I GCNNGC 1 cut(s) 663
CciI TCATGA 2 cut(s) 79, 967
CfoI GCGC 1 cut(s) 915
Cfr13I GGNCC 5 cut(s) 441, 624, 625, 824, 898
Cfr9I CCCGGG 1 cut(s) 421
CsiI ACCWGGT 1 cut(s) 443
Csp6I GTAC 1 cut(s) 353
CviAII CATG 4 cut(s) 80, 577, 828, 968
CviJI RGCY 9 cut(s) 148, 364, 399, 471, 534, 626, 665, 679, 923
CviKI_1 RGCY 9 cut(s) 148, 364, 399, 471, 534, 626, 665, 679, 923
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 6 cut(s) 121, 201, 453, 712, 866, 883
DpnI GATC 6 cut(s) 29, 89, 246, 385, 733, 936
DpnII GATC 6 cut(s) 27, 87, 244, 383, 731, 934
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 3 cut(s) 461, 487, 537
EarI CTCTTC 3 cut(s) 461, 487, 537
Ecl136II GAGCTC 1 cut(s) 923
Eco130I CCWWGG 2 cut(s) 535, 594
Eco24I GRGCYC 2 cut(s) 628, 925
Eco47I GGWCC 3 cut(s) 441, 824, 898
Eco53kI GAGCTC 1 cut(s) 923
Eco57I CTGAAG 3 cut(s) 62, 92, 122
Eco88I CYCGRG 2 cut(s) 356, 421
EcoICRI GAGCTC 1 cut(s) 923
EcoO109I RGGNCCY 1 cut(s) 624
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 2 cut(s) 535, 594
EcoT38I GRGCYC 2 cut(s) 628, 925
ErhI CCWWGG 2 cut(s) 535, 594
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 4 cut(s) 83, 580, 831, 971
FatI CATG 4 cut(s) 79, 576, 827, 967
FauNDI CATATG 1 cut(s) 722
Fnu4HI GCNGC 3 cut(s) 365, 666, 911
FokI GGATG 1 cut(s) 621
FriOI GRGCYC 2 cut(s) 628, 925
Fsp4HI GCNGC 3 cut(s) 365, 666, 911
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 914
GluI GCNGC 3 cut(s) 365, 666, 911
GsuI CTGGAG 1 cut(s) 367
HaeIII GGCC 3 cut(s) 399, 534, 626
HapII CCGG 1 cut(s) 422
HhaI GCGC 1 cut(s) 915
Hin1II CATG 4 cut(s) 83, 580, 831, 971
Hin6I GCGC 1 cut(s) 913
HinP1I GCGC 1 cut(s) 913
HincII GTYRAC 1 cut(s) 858
HindII GTYRAC 1 cut(s) 858
HinfI GANTC 7 cut(s) 46, 76, 106, 196, 325, 757, 964
HpaII CCGG 1 cut(s) 422
Hpy166II GTNNAC 4 cut(s) 524, 718, 858, 930
Hpy188I TCNGA 6 cut(s) 182, 514, 639, 756, 762, 898
Hpy8I GTNNAC 4 cut(s) 524, 718, 858, 930
HpyAV CCTTC 5 cut(s) 262, 320, 385, 592, 760
HpyCH4III ACNGT 3 cut(s) 186, 332, 377
HpyCH4V TGCA 8 cut(s) 114, 138, 158, 231, 489, 668, 692, 910
HpyF3I CTNAG 6 cut(s) 121, 201, 453, 712, 866, 883
Hsp92II CATG 4 cut(s) 83, 580, 831, 971
HspAI GCGC 1 cut(s) 913
Kzo9I GATC 6 cut(s) 27, 87, 244, 383, 731, 934
LguI GCTCTTC 1 cut(s) 461
LmnI GCTCC 2 cut(s) 676, 928
LpnPI CCDG 8 cut(s) 331, 430, 435, 457, 675, 754, 800, 838
Lsp1109I GCAGC 3 cut(s) 351, 652, 922
LweI GCATC 2 cut(s) 291, 701
MabI ACCWGGT 1 cut(s) 443
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 4 cut(s) 50, 326, 425, 736
MalI GATC 6 cut(s) 29, 89, 246, 385, 733, 936
MboI GATC 6 cut(s) 27, 87, 244, 383, 731, 934
MboII GAAGA 7 cut(s) 55, 85, 115, 478, 504, 554, 775
MflI RGATCY 2 cut(s) 383, 731
MhlI GDGCHC 6 cut(s) 62, 292, 628, 653, 880, 925
MlsI TGGCCA 1 cut(s) 534
MluCI AATT 4 cut(s) 190, 272, 794, 904
MluNI TGGCCA 1 cut(s) 534
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 2 cut(s) 205, 662
MnlI CCTC 5 cut(s) 342, 374, 410, 538, 721
Mox20I TGGCCA 1 cut(s) 534
MscI TGGCCA 1 cut(s) 534
MseI TTAA 4 cut(s) 152, 405, 615, 791
Msp20I TGGCCA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 3 cut(s) 422, 423, 445
Mva1269I GAATGC 1 cut(s) 411
MvaI CCWGG 1 cut(s) 445
MvnI CGCG 1 cut(s) 567
NciI CCSGG 2 cut(s) 422, 423
NdeI CATATG 1 cut(s) 722
NdeII GATC 6 cut(s) 27, 87, 244, 383, 731, 934
NlaIII CATG 4 cut(s) 83, 580, 831, 971
NlaIV GGNNCC 2 cut(s) 626, 825
NmuCI GTSAC 3 cut(s) 50, 326, 425
PagI TCATGA 2 cut(s) 79, 967
PciSI GCTCTTC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 692
PctI GAATGC 1 cut(s) 411
PfeI GAWTC 6 cut(s) 46, 76, 106, 196, 757, 964
PkrI GCNGC 3 cut(s) 366, 667, 912
Ple19I CGATCG 1 cut(s) 937
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 925
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 626, 825
PspOMI GGGCCC 1 cut(s) 624
PspPI GGNCC 5 cut(s) 441, 624, 625, 824, 898
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 2 cut(s) 383, 731
PvuI CGATCG 1 cut(s) 937
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SacI GAGCTC 1 cut(s) 925
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 4 cut(s) 152, 405, 615, 791
SatI GCNGC 3 cut(s) 365, 666, 911
Sau3AI GATC 6 cut(s) 27, 87, 244, 383, 731, 934
Sau96I GGNCC 5 cut(s) 441, 624, 625, 824, 898
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 3 cut(s) 422, 423, 445
SduI GDGCHC 6 cut(s) 62, 292, 628, 653, 880, 925
SexAI ACCWGGT 1 cut(s) 443
SfaNI GCATC 2 cut(s) 291, 701
SfcI CTRYAG 1 cut(s) 666
SinI GGWCC 3 cut(s) 441, 824, 898
SmaI CCCGGG 1 cut(s) 423
Sse9I AATT 4 cut(s) 190, 272, 794, 904
SsiI CCGC 2 cut(s) 482, 567
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 925
StyD4I CCNGG 3 cut(s) 420, 421, 443
StyI CCWWGG 2 cut(s) 535, 594
TaaI ACNGT 3 cut(s) 186, 332, 377
TaqI TCGA 3 cut(s) 587, 695, 816
TasI AATT 4 cut(s) 190, 272, 794, 904
TfiI GAWTC 6 cut(s) 46, 76, 106, 196, 757, 964
Tru1I TTAA 4 cut(s) 152, 405, 615, 791
Tru9I TTAA 4 cut(s) 152, 405, 615, 791
TscAI CASTG 2 cut(s) 335, 720
TseFI GTSAC 3 cut(s) 50, 326, 425
TseI GCWGC 3 cut(s) 364, 665, 910
Tsp45I GTSAC 3 cut(s) 50, 326, 425
TspDTI ATGAA 2 cut(s) 565, 623
TspGWI ACGGA 1 cut(s) 915
TspMI CCCGGG 1 cut(s) 421
TspRI CASTG 2 cut(s) 335, 720
VpaK11BI GGWCC 3 cut(s) 441, 824, 898
XapI RAATTY 2 cut(s) 272, 904
XcmI CCANNNNNNNNNTGG 1 cut(s) 669
XmaI CCCGGG 1 cut(s) 421
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.