MD09G1061500.v1.1

EID1-like F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011042
Physical Location & Seq
Forward (+)
4200096 .. 4202558
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1061500.v1.1.491

Sequence Viewer

Length: 903 bp
ATGTCTGATGTACGGCGACTGATGAAGCTTCCTGTAGACAAAATGAATATTACAAAGCAGTATCGTTGCATACACTCAGCAAGTTGTCAATGCACGAAGGGGCATTTAAGTGAAGAAGCGATATTCCTTGTATTCCAACAGTTGAATTGGAATCCTAAGTTGATTGCTACACTTTCCCTTGTCTGCAAATGGTTTGATGATCTTGCCAAGCGTGTGCTGTGGAAGGAATTTTGCCGAACAAGAGCACCAAAGATGATGCTTGATCTTCAATCTAGTGGGAGTCACAGTGTAGATGGGAACTGGAGGGCACTCGGGAAGCTGCTTATTTACTGTACAGGATCTAAGAAGGGTGGCCTCTTTAACAGCATTCATATTCCGGGTCACTTTGTTTATAGGACCAGGTTTTCTAGGACATCAGGGAAGAGCTTTCTTTTACCGCAATGCAGAACAGATGTTTTGTATGTCTCTGACCCCTGTGAACATCTTGACCAAGGTGAAGAGGGAGATGTGGGTTTTTTTCGCGGAGTTTTCAAGTCCTTCTCAATGTCCAAGGTTCGGAAGATGTTGATTAAGAAGGAGGCCCAACTTCATCCGACTGAGGTGTGCCCTTACTGCAAGGCTAAATTATGGAGCATGTTGCAAGCCAAAATGATACCGCAGAGTGCCAGCTGCAGATTGGGAGCTTATGAGGATTGCGTTGAGTATTTTGTTTGCCTCAATGGACATATGCTTGGGATCTGTACCCTGCTACCTTTATCTGATTCAGAAGAAGCATCTGAGGTTTCCTGTTATAATGTTATTGCAAGCGTAGGTTGGGAAGGTCACATGTATCATGGGCTCTTAGTCGTCGTGTCTCTGGAAGCGGAAATCAACCATTCGATCCCACTGAAGTGTTGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.95

Weight (kDa)

8.69

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15440 AT5G39360
fragaria_vesca FvH4_6g47430 FvH4_6g47430 FvH4_6g47430 FvH4_6g47430
malus_domestica MD09G1061500.v1.1
prunus_persica Prupe.3G258700_v2.0.a1
pyrus_communis pycom08g15040
rosa_chinensis RchiOBHm_Chr2g0166511
rosa_laevigata RLG00000021624
rosa_multiflora Rmu_co8321839.1_g000001
rosa_roxburghii Rroxscaffold_2G00084820
rosa_rugosa Rorug02G0523700 Rorug02G0523800
rosa_samantha Rh2AG589600 Rh2BG601900 Rh2CG572600 Rh2DG612400
rosa_wichuraiana Rw2G049150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
AccI GTMKAC 1 cut(s) 36
AccII CGCG 1 cut(s) 522
AciI CCGC 4 cut(s) 437, 522, 656, 863
AclWI GGATC 3 cut(s) 346, 743, 874
AcsI RAATTY 1 cut(s) 227
AfaI GTAC 3 cut(s) 12, 334, 742
AfiI CCNNNNNNNGG 1 cut(s) 555
AflIII ACRYGT 1 cut(s) 825
AgsI TTSAA 3 cut(s) 145, 269, 532
AjnI CCWGG 1 cut(s) 398
AleI CACNNNNGTG 1 cut(s) 889
AluBI AGCT 6 cut(s) 28, 319, 426, 669, 683, 900
AluI AGCT 6 cut(s) 28, 319, 426, 669, 683, 900
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 2 cut(s) 469, 858
AlwI GGATC 3 cut(s) 346, 743, 874
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 2 cut(s) 352, 579
ApeKI GCWGC 3 cut(s) 319, 669, 897
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 396, 580
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 506
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 396
BaeGI GKGCMC 2 cut(s) 310, 608
BanII GRGCYC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 306, 656
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 400
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 2 cut(s) 469, 858
BfaI CTAG 2 cut(s) 273, 408
BfmI CTRYAG 2 cut(s) 33, 670
BisI GCNGC 3 cut(s) 320, 670, 898
BlsI GCNGC 3 cut(s) 321, 671, 899
Bme1390I CCNGG 2 cut(s) 378, 400
Bme18I GGWCC 1 cut(s) 396
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 396, 580
BmrFI CCNGG 2 cut(s) 378, 400
BmsI GCATC 2 cut(s) 246, 782
BpmI CTGGAG 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 490, 549
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 2 cut(s) 490, 549
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 3 cut(s) 90, 588, 768
BseNI ACTGG 1 cut(s) 305
BseSI GKGCMC 2 cut(s) 310, 608
BseXI GCAGC 2 cut(s) 306, 656
Bsh1236I CGCG 1 cut(s) 522
BshFI GGCC 2 cut(s) 354, 581
BsiHKAI GWGCWC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 555
BsmAI GTCTC 2 cut(s) 469, 858
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 2 cut(s) 354, 581
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 4 cut(s) 247, 310, 608, 840
Bsp1407I TGTACA 1 cut(s) 332
Bsp143I GATC 5 cut(s) 199, 262, 338, 735, 879
BspACI CCGC 4 cut(s) 437, 522, 656, 863
BspANI GGCC 2 cut(s) 354, 581
BspCNI CTCAG 3 cut(s) 89, 589, 769
BspFNI CGCG 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 674
BspPI GGATC 3 cut(s) 346, 743, 874
BspQI GCTCTTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 446
BsrGI TGTACA 1 cut(s) 332
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 490, 549
BssMI GATC 5 cut(s) 199, 262, 338, 735, 879
BssT1I CCWWGG 2 cut(s) 490, 549
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 3 cut(s) 141, 287, 332
Bst6I CTCTTC 2 cut(s) 416, 492
BstAUI TGTACA 1 cut(s) 332
BstC8I GCNNGC 3 cut(s) 642, 667, 805
BstDEI CTNAG 6 cut(s) 76, 156, 342, 597, 777, 841
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 1 cut(s) 522
BstKTI GATC 5 cut(s) 202, 265, 341, 738, 882
BstMAI GTCTC 2 cut(s) 469, 858
BstMBI GATC 5 cut(s) 199, 262, 338, 735, 879
BstMWI GCNNNNNNNGC 1 cut(s) 612
BstNI CCWGG 1 cut(s) 400
BstNSI RCATGY 2 cut(s) 637, 829
BstSCI CCNGG 2 cut(s) 376, 398
BstSFI CTRYAG 2 cut(s) 33, 670
BstSLI GKGCMC 2 cut(s) 310, 608
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 306, 656
BstX2I RGATCY 2 cut(s) 338, 735
BstYI RGATCY 2 cut(s) 338, 735
BsuRI GGCC 2 cut(s) 354, 581
BtsCI GGATG 1 cut(s) 589
BtsIMutI CAGTG 2 cut(s) 292, 884
Cac8I GCNNGC 3 cut(s) 642, 667, 805
Cfr13I GGNCC 2 cut(s) 396, 580
CsiI ACCWGGT 1 cut(s) 398
Csp6I GTAC 3 cut(s) 11, 333, 741
CviAII CATG 3 cut(s) 634, 826, 833
CviQI GTAC 3 cut(s) 11, 333, 741
DdeI CTNAG 6 cut(s) 76, 156, 342, 597, 777, 841
DpnI GATC 5 cut(s) 201, 264, 340, 737, 881
DpnII GATC 5 cut(s) 199, 262, 338, 735, 879
Eam1104I CTCTTC 2 cut(s) 416, 492
EarI CTCTTC 2 cut(s) 416, 492
Eco130I CCWWGG 2 cut(s) 490, 549
Eco24I GRGCYC 1 cut(s) 840
Eco47I GGWCC 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 2 cut(s) 490, 549
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 2 cut(s) 490, 549
FaeI CATG 3 cut(s) 637, 829, 836
FatI CATG 3 cut(s) 633, 825, 832
FauNDI CATATG 1 cut(s) 726
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 320, 670, 898
FokI GGATG 1 cut(s) 576
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 3 cut(s) 320, 670, 898
FspBI CTAG 2 cut(s) 273, 408
GluI GCNGC 3 cut(s) 320, 670, 898
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 2 cut(s) 354, 581
HapII CCGG 1 cut(s) 377
Hin1II CATG 3 cut(s) 637, 829, 836
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 3 cut(s) 151, 280, 761
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 2 cut(s) 37, 479
Hpy188I TCNGA 7 cut(s) 7, 469, 558, 594, 760, 766, 778
Hpy188III TCNNGA 3 cut(s) 313, 485, 857
Hpy8I GTNNAC 2 cut(s) 37, 479
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 6 cut(s) 91, 217, 340, 547, 568, 812
HpyCH4III ACNGT 3 cut(s) 141, 287, 332
HpyCH4V TGCA 9 cut(s) 69, 93, 186, 444, 615, 640, 672, 803, 897
HpyF10VI GCNNNNNNNGC 1 cut(s) 612
HpyF3I CTNAG 6 cut(s) 76, 156, 342, 597, 777, 841
Hsp92II CATG 3 cut(s) 637, 829, 836
Kzo9I GATC 5 cut(s) 199, 262, 338, 735, 879
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 2 cut(s) 630, 680
Lsp1109I GCAGC 2 cut(s) 306, 656
LweI GCATC 2 cut(s) 246, 782
MabI ACCWGGT 1 cut(s) 398
MaeI CTAG 2 cut(s) 273, 408
MaeIII GTNAC 3 cut(s) 281, 380, 821
MalI GATC 5 cut(s) 201, 264, 340, 737, 881
MboI GATC 5 cut(s) 199, 262, 338, 735, 879
MboII GAAGA 6 cut(s) 125, 257, 433, 509, 571, 779
MflI RGATCY 2 cut(s) 338, 735
MhlI GDGCHC 4 cut(s) 247, 310, 608, 840
MluCI AATT 3 cut(s) 145, 227, 623
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 2 cut(s) 160, 617
MnlI CCTC 8 cut(s) 297, 365, 493, 571, 592, 682, 725, 772
MseI TTAA 3 cut(s) 107, 360, 570
MslI CAYNNNNRTG 2 cut(s) 108, 889
MspA1I CMGCKG 2 cut(s) 669, 900
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 2 cut(s) 378, 400
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 400
MvnI CGCG 1 cut(s) 522
MwoI GCNNNNNNNGC 1 cut(s) 612
NciI CCSGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 726
NdeII GATC 5 cut(s) 199, 262, 338, 735, 879
NlaIII CATG 3 cut(s) 637, 829, 836
NmuCI GTSAC 3 cut(s) 281, 380, 821
NspI RCATGY 2 cut(s) 637, 829
OliI CACNNNNGTG 1 cut(s) 889
PciI ACATGT 1 cut(s) 825
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 151, 761
PkrI GCNGC 3 cut(s) 321, 671, 899
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
PscI ACATGT 1 cut(s) 825
PsiI TTATAA 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspPI GGNCC 2 cut(s) 396, 580
PstI CTGCAG 1 cut(s) 674
PsuI RGATCY 2 cut(s) 338, 735
PvuII CAGCTG 2 cut(s) 669, 900
RsaI GTAC 3 cut(s) 12, 334, 742
RsaNI GTAC 3 cut(s) 11, 333, 741
RseI CAYNNNNRTG 2 cut(s) 108, 889
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 3 cut(s) 107, 360, 570
SatI GCNGC 3 cut(s) 320, 670, 898
Sau3AI GATC 5 cut(s) 199, 262, 338, 735, 879
Sau96I GGNCC 2 cut(s) 396, 580
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 2 cut(s) 378, 400
SduI GDGCHC 4 cut(s) 247, 310, 608, 840
SexAI ACCWGGT 1 cut(s) 398
SfaNI GCATC 2 cut(s) 246, 782
SfcI CTRYAG 2 cut(s) 33, 670
SinI GGWCC 1 cut(s) 396
SmiMI CAYNNNNRTG 2 cut(s) 108, 889
Sse9I AATT 3 cut(s) 145, 227, 623
SsiI CCGC 4 cut(s) 437, 522, 656, 863
SspI AATATT 1 cut(s) 49
SspMI CTAG 2 cut(s) 273, 408
StyD4I CCNGG 2 cut(s) 376, 398
StyI CCWWGG 2 cut(s) 490, 549
TaaI ACNGT 3 cut(s) 141, 287, 332
TaqI TCGA 1 cut(s) 878
TasI AATT 3 cut(s) 145, 227, 623
TatI WGTACW 1 cut(s) 332
TfiI GAWTC 2 cut(s) 151, 761
Tru1I TTAA 3 cut(s) 107, 360, 570
Tru9I TTAA 3 cut(s) 107, 360, 570
TscAI CASTG 2 cut(s) 292, 891
TseFI GTSAC 3 cut(s) 281, 380, 821
TseI GCWGC 3 cut(s) 319, 669, 897
Tsp45I GTSAC 3 cut(s) 281, 380, 821
TspDTI ATGAA 4 cut(s) 38, 59, 359, 578
TspRI CASTG 2 cut(s) 292, 891
VpaK11BI GGWCC 1 cut(s) 396
XapI RAATTY 1 cut(s) 227
XceI RCATGY 2 cut(s) 637, 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 2 cut(s) 273, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.