Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013199

Physical Location & Seq

Genomic Coordinates Forward (+)

5122428 .. 5124947

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGAGCGTTTAGGATTTTGGGGATTGCTAATGGGTAGTGTGGAAAAGTCATTGGATTCTGGAAATTCGTTGGCTTGCTCTGCATCTGCTAAGAATGGAGACGAAGAGAGTAGTACTTCATCGAAGCAAGTTTCACCATTGAAGGGTTCTGGGTCGAGAAATACTAGTCCTTTAGGTCGAGTTGGGTCGAGAAACACGAGTCCTTCTAGGCAGAAAGTGGTGAAGACGAAGCCTCGTGGTCTAGAGGAAGAAACAGTTGCTTCATTTGGTAAACAAGTTGTTGCTGATGTGCAGATGGAAGATGGTATATGGGCAATGCTTCCAGAGGATTTGCTCAATGAGATTTTAGCTAGGGTTCCACCGTTTATGATATTTCGAATCCGGTCTGTTTGTAAAAAATGGAACTTGATTCTTCAGGATAATAGTTTTCTCAAGTTTCACTCAAATGTGTCATCTCATGGGCCTTGTCTTCTCACTTTCTGGAAGAACTCGCCGCAGATTCCGCAATGCTCAGTTTTTAGTTTGCCATTGAAGACATGGTACAAAATTCCATTCACGTTTTTGCCTCCATGGGCTTTTTGGTTGGTTGGTTCTTCAGGTGGTCTCGTTTGTTTTTCGGGTCTTGATGGTCTAACTTTCAGAACTTTAGTATGCAATCCTCTGATGCAGAGTTGGAGGACTCTACCGAGTATGCACTATAACCAACAAAGGCAATTGATTATGGTCGTGGATCGCTCAGACAAATCGTTCAAAGTCATAGCCACAAGTGATATATACGGGGATAAGTCACTTCCTACTGAAGTTTATGATTCCAAAACTGACAAATGGTCCTTACATCAGATAATGCCTGCGGTGAACTTATGCTCCTCGAAAATGGCTTATTGTGATTCCCGGTTATATCTAGAAACTCTTTCGCCTCTTGGTTTGATGATGTATCGGCTTGATTCAGGGCAATGGGAACACATTCCAGCTAAATTCCCGAGATCTTTGTTGGATGGTTACTTAGTTGCTGGAACTCAGAAGAGATTGTTTCTCGTGGGAAGGATTGGCCTCTACAGTACTCTCCAAAGCATGAGAATATGGGAGCTTGATCACACAAAGGTCTCTTGGGTAGAGATAAGTAGAATGCCACCAAAGTACTTCCGAGCACTTCTGAGACTTTCGGCTGAGAGGTTCGAGTGTTTTGGACAAGATAATTTGATCTGCTTTACGTCTTGGAATCAAGGAAAAGGTCTTCTATACAATGTGGATAAGAAAATTTGGTCTTGGATTTCCGGTTGTGCTCTTCAGTCATGCAACAGCCAAGTGTGCTTTTATGAGCCAAGATTTGATGCATCTGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

448

Amino Acids

50.73

Weight (kDa)

9.12

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	105 - 145	4.1e-08	F-box domain
Beta-prop_KIB1-4	PF03478	174 - 378	1.2e-07	KIB1-4 beta-propeller
b-prop_At3g26010-like	PF24750	193 - 303	6.4e-07	F-box protein At3g26010-like, beta-propeller
FBA_1	PF07734	202 - 424	6.6e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15710 AT5G15710
fragaria_vesca	FvH4_6g46160
malus_domestica	MD09G1076600.v1.1
prunus_persica	Prupe.3G247500_v2.0.a1 Prupe.3G247500_v2.0.a1
pyrus_communis	pycom09g00380 pycom17g06740
rosa_chinensis	RchiOBHm_Chr2g0164611
rosa_laevigata	RLG00000021469
rosa_multiflora	Rmu_ssc0000076.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086460
rosa_rugosa	Rorug02G0509400
rosa_samantha	Rh2AG577000 Rh2BG588100 Rh2CG558900 Rh2DG598700
rosa_wichuraiana	Rw2G047910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	494, 503, 851
AclWI	GGATC	1 cut(s)	738
AcsI	RAATTY	4 cut(s)	64, 546, 974, 1257
AcuI	CTGAAG	4 cut(s)	398, 579, 819, 1271
AfaI	GTAC	4 cut(s)	115, 542, 1060, 1139
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	142, 532, 751
AhdI	GACNNNNNGTC	1 cut(s)	826
AhlI	ACTAGT	1 cut(s)	164
AloI	GAACNNNNNNTCC	2 cut(s)	848, 880
AluBI	AGCT	3 cut(s)	350, 971, 1087
AluI	AGCT	3 cut(s)	350, 971, 1087
Alw21I	GWGCWC	2 cut(s)	1150, 1285
Alw26I	GTCTC	4 cut(s)	93, 608, 1108, 1150
AlwI	GGATC	1 cut(s)	738
Ama87I	CYCGRG	1 cut(s)	979
AoxI	GGCC	2 cut(s)	461, 1048
ApoI	RAATTY	4 cut(s)	64, 546, 974, 1257
Asp700I	GAANNNNTTC	1 cut(s)	963
AspS9I	GGNCC	2 cut(s)	461, 828
AsuC2I	CCSGG	1 cut(s)	892
AsuHPI	GGTGA	3 cut(s)	126, 232, 865
AsuII	TTCGAA	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	979
AvaII	GGWCC	1 cut(s)	828
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
BauI	CACGAG	3 cut(s)	196, 234, 1034
BbsI	GAAGAC	4 cut(s)	230, 461, 539, 1226
Bbv12I	GWGCWC	2 cut(s)	1150, 1285
BccI	CCATC	4 cut(s)	289, 296, 620, 989
BclI	TGATCA	1 cut(s)	1090
BcnI	CCSGG	1 cut(s)	892
BcoDI	GTCTC	4 cut(s)	93, 608, 1108, 1150
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	5 cut(s)	165, 207, 242, 351, 902
BfmI	CTRYAG	1 cut(s)	1054
BglII	AGATCT	1 cut(s)	983
BisI	GCNGC	1 cut(s)	494
BlsI	GCNGC	1 cut(s)	495
BmcAI	AGTACT	3 cut(s)	115, 1060, 1139
Bme1390I	CCNGG	1 cut(s)	892
Bme18I	GGWCC	1 cut(s)	828
BmeRI	GACNNNNNGTC	1 cut(s)	826
BmeT110I	CYCGRG	1 cut(s)	979
BmgT120I	GGNCC	2 cut(s)	461, 828
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	892
BmsI	GCATC	4 cut(s)	92, 654, 1321, 1343
BpiI	GAAGAC	4 cut(s)	230, 461, 539, 1226
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	892
BsaI	GGTCTC	2 cut(s)	608, 1108
BsaJI	CCNNGG	1 cut(s)	569
BsaWI	WCCGGW	2 cut(s)	381, 1274
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse3DI	GCAATG	3 cut(s)	321, 512, 959
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	1000
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	3 cut(s)	321, 512, 959
BseMII	CTCAG	5 cut(s)	525, 750, 1031, 1145, 1158
BseRI	GAGGAG	1 cut(s)	856
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	463, 1050
BsiHKAI	GWGCWC	2 cut(s)	1150, 1285
BsiHKCI	CYCGRG	1 cut(s)	979
BsiSI	CCGG	3 cut(s)	382, 892, 1275
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	4 cut(s)	93, 608, 1108, 1150
BsmBI	CGTCTC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	1131
BsnI	GGCC	2 cut(s)	463, 1050
Bso31I	GGTCTC	2 cut(s)	608, 1108
BsoBI	CYCGRG	1 cut(s)	979
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	1150, 1285
Bsp143I	GATC	4 cut(s)	730, 983, 1090, 1200
Bsp19I	CCATGG	1 cut(s)	569
BspACI	CCGC	3 cut(s)	494, 503, 851
BspANI	GGCC	2 cut(s)	463, 1050
BspCNI	CTCAG	5 cut(s)	524, 749, 1030, 1146, 1159
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	738
BspQI	GCTCTTC	1 cut(s)	1290
BspT104I	TTCGAA	1 cut(s)	376
BspTNI	GGTCTC	2 cut(s)	608, 1108
BsrDI	GCAATG	3 cut(s)	321, 512, 959
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	4 cut(s)	730, 983, 1090, 1200
BssSI	CACGAG	3 cut(s)	196, 234, 1034
BssT1I	CCWWGG	1 cut(s)	569
Bst2BI	CACGAG	3 cut(s)	196, 234, 1034
Bst4CI	ACNGT	3 cut(s)	256, 363, 1058
Bst6I	CTCTTC	3 cut(s)	99, 1016, 1290
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	76, 849
BstDEI	CTNAG	7 cut(s)	90, 511, 736, 1003, 1017, 1154, 1167
BstDSI	CCRYGG	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	1000
BstKTI	GATC	4 cut(s)	733, 986, 1093, 1203
BstMAI	GTCTC	4 cut(s)	93, 608, 1108, 1150
BstMBI	GATC	4 cut(s)	730, 983, 1090, 1200
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 502, 1308
BstSCI	CCNGG	1 cut(s)	890
BstSFI	CTRYAG	1 cut(s)	1054
BstV2I	GAAGAC	4 cut(s)	230, 461, 539, 1226
BstX2I	RGATCY	1 cut(s)	983
BstYI	RGATCY	1 cut(s)	983
BsuRI	GGCC	2 cut(s)	463, 1050
BtgI	CCRYGG	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	1000
Cac8I	GCNNGC	2 cut(s)	76, 849
Cfr13I	GGNCC	2 cut(s)	461, 828
Csp6I	GTAC	4 cut(s)	114, 541, 1059, 1138
CviAII	CATG	5 cut(s)	458, 537, 570, 1072, 1293
CviQI	GTAC	4 cut(s)	114, 541, 1059, 1138
DdeI	CTNAG	7 cut(s)	90, 511, 736, 1003, 1017, 1154, 1167
DpnI	GATC	4 cut(s)	732, 985, 1092, 1202
DpnII	GATC	4 cut(s)	730, 983, 1090, 1200
DriI	GACNNNNNGTC	1 cut(s)	826
Eam1104I	CTCTTC	3 cut(s)	99, 1016, 1290
Eam1105I	GACNNNNNGTC	1 cut(s)	826
EarI	CTCTTC	3 cut(s)	99, 1016, 1290
Eco130I	CCWWGG	1 cut(s)	569
Eco31I	GGTCTC	2 cut(s)	608, 1108
Eco47I	GGWCC	1 cut(s)	828
Eco57I	CTGAAG	4 cut(s)	398, 579, 819, 1271
Eco88I	CYCGRG	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	569
EcoT22I	ATGCAT	1 cut(s)	1336
ErhI	CCWWGG	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	5 cut(s)	461, 540, 573, 1075, 1296
FatI	CATG	5 cut(s)	457, 536, 569, 1071, 1292
FbaI	TGATCA	1 cut(s)	1090
Fnu4HI	GCNGC	1 cut(s)	494
FokI	GGATG	1 cut(s)	1007
Fsp4HI	GCNGC	1 cut(s)	494
FspBI	CTAG	5 cut(s)	165, 207, 242, 351, 902
GluI	GCNGC	1 cut(s)	494
HaeIII	GGCC	2 cut(s)	463, 1050
HapII	CCGG	3 cut(s)	382, 892, 1275
Hin1II	CATG	5 cut(s)	461, 540, 573, 1075, 1296
HpaII	CCGG	3 cut(s)	382, 892, 1275
HphI	GGTGA	3 cut(s)	126, 232, 865
Hpy166II	GTNNAC	2 cut(s)	272, 856
Hpy188I	TCNGA	8 cut(s)	641, 663, 739, 840, 1020, 1145, 1155, 1346
Hpy8I	GTNNAC	2 cut(s)	272, 856
HpyAV	CCTTC	3 cut(s)	136, 213, 1035
HpyCH4III	ACNGT	3 cut(s)	256, 363, 1058
HpyCH4IV	ACGT	2 cut(s)	557, 1211
HpyCH4V	TGCA	7 cut(s)	83, 292, 654, 667, 694, 1296, 1334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 502, 1308
HpyF3I	CTNAG	7 cut(s)	90, 511, 736, 1003, 1017, 1154, 1167
HpySE526I	ACGT	2 cut(s)	557, 1211
Hsp92II	CATG	5 cut(s)	461, 540, 573, 1075, 1296
Ksp22I	TGATCA	1 cut(s)	1090
Kzo9I	GATC	4 cut(s)	730, 983, 1090, 1200
LguI	GCTCTTC	1 cut(s)	1290
LmnI	GCTCC	3 cut(s)	4, 869, 1084
LweI	GCATC	4 cut(s)	92, 654, 1321, 1343
MaeI	CTAG	5 cut(s)	165, 207, 242, 351, 902
MaeII	ACGT	2 cut(s)	557, 1211
MaeIII	GTNAC	2 cut(s)	786, 998
MalI	GATC	4 cut(s)	732, 985, 1092, 1202
MboI	GATC	4 cut(s)	730, 983, 1090, 1200
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	1 cut(s)	983
MhlI	GDGCHC	2 cut(s)	1150, 1285
MluCI	AATT	6 cut(s)	64, 546, 713, 974, 1195, 1257
MlyI	GAGTC	2 cut(s)	208, 673
MmeI	TCCRAC	2 cut(s)	653, 972
Mph1103I	ATGCAT	1 cut(s)	1336
MroXI	GAANNNNTTC	1 cut(s)	963
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	3 cut(s)	382, 892, 1275
MspR9I	CCNGG	1 cut(s)	892
MunI	CAATTG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	1131
MwoI	GCNNNNNNNGC	3 cut(s)	80, 502, 1308
NciI	CCSGG	1 cut(s)	892
NcoI	CCATGG	1 cut(s)	569
NdeII	GATC	4 cut(s)	730, 983, 1090, 1200
NlaIII	CATG	5 cut(s)	461, 540, 573, 1075, 1296
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	786
NsiI	ATGCAT	1 cut(s)	1336
NspV	TTCGAA	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	1290
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PctI	GAATGC	1 cut(s)	1131
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	8 cut(s)	56, 378, 409, 499, 809, 887, 944, 1219
PkrI	GCNGC	1 cut(s)	495
PleI	GAGTC	2 cut(s)	207, 673
PpsI	GAGTC	2 cut(s)	207, 673
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	461, 828
PsuI	RGATCY	1 cut(s)	983
RsaI	GTAC	4 cut(s)	115, 542, 1060, 1139
RsaNI	GTAC	4 cut(s)	114, 541, 1059, 1138
RseI	CAYNNNNRTG	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	1290
SatI	GCNGC	1 cut(s)	494
Sau3AI	GATC	4 cut(s)	730, 983, 1090, 1200
Sau96I	GGNCC	2 cut(s)	461, 828
ScaI	AGTACT	3 cut(s)	115, 1060, 1139
SchI	GAGTC	2 cut(s)	208, 673
ScrFI	CCNGG	1 cut(s)	892
SduI	GDGCHC	2 cut(s)	1150, 1285
SfaNI	GCATC	4 cut(s)	92, 654, 1321, 1343
SfcI	CTRYAG	1 cut(s)	1054
SfuI	TTCGAA	1 cut(s)	376
SinI	GGWCC	1 cut(s)	828
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	6 cut(s)	64, 546, 713, 974, 1195, 1257
SsiI	CCGC	3 cut(s)	494, 503, 851
SspMI	CTAG	5 cut(s)	165, 207, 242, 351, 902
StyD4I	CCNGG	1 cut(s)	890
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	3 cut(s)	256, 363, 1058
TaiI	ACGT	2 cut(s)	560, 1214
TaqI	TCGA	7 cut(s)	122, 155, 178, 188, 376, 869, 1176
TasI	AATT	6 cut(s)	64, 546, 713, 974, 1195, 1257
TatI	WGTACW	3 cut(s)	113, 1058, 1137
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	8 cut(s)	56, 378, 409, 499, 809, 887, 944, 1219
TseFI	GTSAC	1 cut(s)	786
Tsp45I	GTSAC	1 cut(s)	786
TspDTI	ATGAA	2 cut(s)	108, 252
VpaK11BI	GGWCC	1 cut(s)	828
XapI	RAATTY	4 cut(s)	64, 546, 974, 1257
XbaI	TCTAGA	2 cut(s)	241, 901
XcmI	CCANNNNNNNNNTGG	2 cut(s)	534, 576
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	5 cut(s)	165, 207, 242, 351, 902
ZrmI	AGTACT	3 cut(s)	115, 1060, 1139
Zsp2I	ATGCAT	1 cut(s)	1336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.