Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013199

Physical Location & Seq

Genomic Coordinates Forward (+)

64019151 .. 64022220

Gene Structure 3070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0509400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATTAAAGTGTTGAACTTGTTTTTTGCAGAGCAGACTTTCATTGTGTTAGATAAGCAATTGGTGGTGGGAGAGTTCAAACACGGAGAGGCCCATGTGGAAGCCATGGTAGGTGATGTGAATTTATATATGAATGACCTGGATGATCCCCAAATGGGAGAGGTTGAAATAATGATAGCTGAACCCAAAAGTCGTGGTAAAGGACATGGGAAGGAATCTGTCTTGATGATGATGGCATTTGCAGTTGTGAATTTGGGGATTCACATCTTCCGTGTTAAAATTGGAGAATCAAATGGTGCATCTCTTAGCTTGTTCCAGAAATTGGGATTTGAGGAGACTTCTCGTAGTGAAATCTTCAAAGAGGTGACATTGGAGCTAAATGTAACAAAGGCCAAGCATGAGGAGCTGCTGCATTTGATGGGTAGCTTGACTTGTTTGAAACCTTTAAGCTGGGTTGTCACTGGTTATAGGCATCGTGTAAATGTTCAAGCTCCCGTTCGAATTGCGAAAAGCAACAGCTGGTTGGGTCAAGAGTTGGTTCACTGGTTCAACCAGCCAGTTTACGATAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

190

Amino Acids

21.52

Weight (kDa)

6.24

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	36 - 111	5e-10	Acetyltransferase (GNAT) domain
FR47	PF08445	49 - 114	1.1e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15710 AT5G15710
fragaria_vesca	FvH4_6g46160
malus_domestica	MD09G1076600.v1.1
prunus_persica	Prupe.3G247500_v2.0.a1 Prupe.3G247500_v2.0.a1
pyrus_communis	pycom09g00380 pycom17g06740
rosa_chinensis	RchiOBHm_Chr2g0164611
rosa_laevigata	RLG00000021469
rosa_multiflora	Rmu_ssc0000076.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086460
rosa_rugosa	Rorug02G0509400
rosa_samantha	Rh2AG577000 Rh2BG588100 Rh2CG558900 Rh2DG598700
rosa_wichuraiana	Rw2G047910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	322
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	121, 250
AfiI	CCNNNNNNNGG	2 cut(s)	155, 322
AgsI	TTSAA	7 cut(s)	16, 79, 167, 358, 439, 488, 550
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	8 cut(s)	179, 309, 376, 406, 426, 450, 491, 519
AluI	AGCT	8 cut(s)	179, 309, 376, 406, 426, 450, 491, 519
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	90, 390
ApeKI	GCWGC	2 cut(s)	406, 409
ApoI	RAATTY	2 cut(s)	121, 250
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	125, 376
AsuII	TTCGAA	1 cut(s)	499
BbvI	GCAGC	2 cut(s)	393, 396
BccI	CCATC	2 cut(s)	226, 412
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	329
BisI	GCNGC	2 cut(s)	407, 410
BlsI	GCNGC	2 cut(s)	408, 411
Bme1390I	CCNGG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	308, 481
Bpu14I	TTCGAA	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 322
Bse1I	ACTGG	3 cut(s)	466, 548, 557
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	155, 322
BseNI	ACTGG	3 cut(s)	466, 548, 557
BseRI	GAGGAG	2 cut(s)	347, 416
BseXI	GCAGC	2 cut(s)	393, 396
BseYI	CCCAGC	1 cut(s)	450
BshFI	GGCC	2 cut(s)	92, 392
BslI	CCNNNNNNNGG	2 cut(s)	155, 322
BsmAI	GTCTC	1 cut(s)	329
BsnI	GGCC	2 cut(s)	92, 392
Bsp119I	TTCGAA	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	2 cut(s)	92, 392
BspPI	GGATC	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	499
BsrI	ACTGG	3 cut(s)	466, 548, 557
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	305
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	393, 396
BsuRI	GGCC	2 cut(s)	92, 392
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	459, 541
Cfr13I	GGNCC	1 cut(s)	91
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviAII	CATG	4 cut(s)	95, 106, 206, 398
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	4 cut(s)	98, 109, 209, 401
FaiI	YATR	8 cut(s)	96, 107, 127, 129, 131, 207, 399, 468
FatI	CATG	4 cut(s)	94, 105, 205, 397
Fnu4HI	GCNGC	2 cut(s)	407, 410
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	407, 410
GluI	GCNGC	2 cut(s)	407, 410
GsaI	CCCAGC	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	92, 392
Hin1II	CATG	4 cut(s)	98, 109, 209, 401
HinfI	GANTC	3 cut(s)	215, 259, 287
HphI	GGTGA	2 cut(s)	125, 376
Hpy166II	GTNNAC	2 cut(s)	541, 562
Hpy188III	TCNNGA	3 cut(s)	223, 316, 530
Hpy8I	GTNNAC	2 cut(s)	541, 562
HpyAV	CCTTC	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	29, 242, 299, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	98, 109, 209, 401
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	3 cut(s)	373, 403, 496
LpnPI	CCDG	8 cut(s)	125, 152, 329, 436, 447, 505, 529, 566
Lsp1109I	GCAGC	2 cut(s)	393, 396
LweI	GCATC	2 cut(s)	308, 481
MaeIII	GTNAC	3 cut(s)	364, 382, 457
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	259, 346
MfeI	CAATTG	1 cut(s)	59
MluCI	AATT	6 cut(s)	59, 121, 250, 279, 320, 501
MnlI	CCTC	5 cut(s)	82, 154, 325, 355, 394
MseI	TTAA	3 cut(s)	6, 276, 446
MspA1I	CMGCKG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	98, 109, 209, 401
NmuCI	GTSAC	2 cut(s)	364, 457
NspV	TTCGAA	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	215, 259, 287
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	408, 411
Psp6I	CCWGG	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	450
PspGI	CCWGG	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	519
SaqAI	TTAA	3 cut(s)	6, 276, 446
SatI	GCNGC	2 cut(s)	407, 410
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	140
SfaNI	GCATC	2 cut(s)	308, 481
SfuI	TTCGAA	1 cut(s)	499
Sse9I	AATT	6 cut(s)	59, 121, 250, 279, 320, 501
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	1 cut(s)	499
TasI	AATT	6 cut(s)	59, 121, 250, 279, 320, 501
TfiI	GAWTC	3 cut(s)	215, 259, 287
Tru1I	TTAA	3 cut(s)	6, 276, 446
Tru9I	TTAA	3 cut(s)	6, 276, 446
TscAI	CASTG	2 cut(s)	466, 548
TseFI	GTSAC	2 cut(s)	364, 457
TseI	GCWGC	2 cut(s)	406, 409
Tsp45I	GTSAC	2 cut(s)	364, 457
TspDTI	ATGAA	2 cut(s)	31, 146
TspGWI	ACGGA	2 cut(s)	99, 260
TspRI	CASTG	2 cut(s)	466, 548
Van91I	CCANNNNNTGG	1 cut(s)	322
XapI	RAATTY	2 cut(s)	121, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.