Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013199

Physical Location & Seq

Genomic Coordinates Forward (+)

83100147 .. 83103457

Gene Structure 3311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG598700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGATGGTGCTGGGGAATCTTCTGATTCTGGGTCCGCAGTGTCTAGTGTGAAACCTATGGGAAATGGGTTTTCTGGTGAAGATGATAGGTGCCCCAAGCAAGTGTCGCCTATTAGAGGCAGTGGGTCGAGGAATACAAGCCCTTTGGGTTGTGTAAGGTCAAGAAACACTAGCCCTTCTAGGCAAAAGGTGGTTAAGACAAAGCCGAGAGGACTAGATGAGGAAACGGCTGCCACATTTGGTAAAGCGGTTCACCCTGATGTTCAAATGGAGGATAATATATGGGCAATGCTGCCTGAGGACTTGTTGAATGAGATATTAGCTAGGGTTCCACCATTTATGATATTCAGGCTCCGATGTGTTTGTAAGAGGTGGAATGCGATTCTACAAGATAAAAGCTTTATTAAGTTCCACTCACAAGTGCCATCTCATGGGCCTTGTCTTCTCACATTTTGGAAGAATTCTCAGACCCCGCAATGCTCGGTGTTCAGCTTGCCTCTGAAAACATGGTACAGAATACCATTCACATTTTTACCACAGTGGGCGTTCTGGTTGGTTGGCTCATCTGCCGGTCTAGTTTGCTTCTCGGGGCTTGATGGCTTAGTTTTTAAAACCTTAGTGTGTAACCCTCTCACACAAACTTGGAGGACTTTGCCTAGTATGCATTATAATCAGCAAAGGCAGCTGATAATGGTTGTTGACAGGAAGGATCGCTCATTTAAAGTTATAGCCACTAGTGATATCTATGGTGACAAATCCTTGCCCACTGAAGTATATGATTCAAAACTCAATAGTTGGTCAATTCACCAGATAATGCCTGCAGTTAATTTATGCTCCTCAAAGATGGCATATTGTGACTCAAGATTGTATTTGGAAACTCTTTCTCCGCTTGGTCTGATGATGTATCGGCTGGACACAGGTTACTGGGAACACATTCCAGCTAAGTTCCCCCGGTCGTTATTGGATGGTTATTTGGTTGCTGGCACCCAGAAGCGTCTGTTTCTAGTTGGAAGAATCGGTCTTTATAGTACTCTTCAGAGTATGAGAATTTGGGAACTGGATCATGCTAAATTTATGTGGGTGGAGATCAGCAGGATGCCTCCAAAGTACTTTCGTTCTTTGTTAAGGTTATCAGCTGAGAGATTTGAGTGCTCTGGACAGGATAACTTGATTTGCTTCACATCTTGGAACCAAGGGAAGGGCCTTCTTTATGATGTGGATAAGAAGATGTGGTCTTGGATTGCAGGTTGTGCTCTTCAGTCATACAACAGCCAGGTTTGTTTTTATGAGCCAAGATTCGATGCTTCCATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

438

Amino Acids

49.93

Weight (kDa)

9.09

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	95 - 133	8.3e-07	F-box-like
F-box	PF00646	96 - 135	8.6e-10	F-box domain
Beta-prop_KIB1-4	PF03478	164 - 394	9e-08	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15710 AT5G15710
fragaria_vesca	FvH4_6g46160
malus_domestica	MD09G1076600.v1.1
prunus_persica	Prupe.3G247500_v2.0.a1 Prupe.3G247500_v2.0.a1
pyrus_communis	pycom09g00380 pycom17g06740
rosa_chinensis	RchiOBHm_Chr2g0164611
rosa_laevigata	RLG00000021469
rosa_multiflora	Rmu_ssc0000076.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086460
rosa_rugosa	Rorug02G0509400
rosa_samantha	Rh2AG577000 Rh2BG588100 Rh2CG558900 Rh2DG598700
rosa_wichuraiana	Rw2G047910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
Acc36I	ACCTGC	1 cut(s)	1235
AccB1I	GGYRCC	2 cut(s)	90, 983
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	4 cut(s)	36, 248, 473, 887
AclWI	GGATC	2 cut(s)	717, 1068
AcsI	RAATTY	3 cut(s)	460, 1047, 1070
AcuI	CTGAAG	3 cut(s)	789, 1019, 1241
AfaI	GTAC	3 cut(s)	512, 1030, 1109
AfiI	CCNNNNNNNGG	3 cut(s)	116, 431, 1198
AgsI	TTSAA	3 cut(s)	266, 310, 783
AhlI	ACTAGT	1 cut(s)	734
AjnI	CCWGG	1 cut(s)	1272
AluBI	AGCT	6 cut(s)	323, 399, 492, 685, 941, 1136
AluI	AGCT	6 cut(s)	323, 399, 492, 685, 941, 1136
Alw21I	GWGCWC	2 cut(s)	1154, 1255
AlwI	GGATC	2 cut(s)	717, 1068
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	2 cut(s)	434, 1201
ApeKI	GCWGC	3 cut(s)	230, 292, 682
ApoI	RAATTY	3 cut(s)	460, 1047, 1070
Asp700I	GAANNNNTTC	1 cut(s)	933
AspS9I	GGNCC	3 cut(s)	33, 434, 1201
AsuC2I	CCSGG	1 cut(s)	952
AsuHPI	GGTGA	4 cut(s)	89, 245, 761, 797
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	33
AxyI	CCTNAGG	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	2 cut(s)	90, 983
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	2 cut(s)	1154, 1255
BbvI	GCAGC	3 cut(s)	217, 279, 694
BccI	CCATC	5 cut(s)	433, 590, 838, 959, 1316
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	1274
BcnI	CCSGG	1 cut(s)	952
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	9 cut(s)	45, 171, 180, 215, 324, 575, 657, 735, 1004
BfmI	CTRYAG	1 cut(s)	819
BfuAI	ACCTGC	1 cut(s)	1235
BisI	GCNGC	3 cut(s)	231, 293, 683
BlsI	GCNGC	3 cut(s)	232, 294, 684
BmcAI	AGTACT	2 cut(s)	1030, 1109
Bme1390I	CCNGG	2 cut(s)	952, 1274
Bme18I	GGWCC	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	3 cut(s)	33, 434, 1201
BmiI	GGNNCC	6 cut(s)	34, 92, 330, 353, 985, 1190
BmrFI	CCNGG	2 cut(s)	952, 1274
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	2 cut(s)	1086, 1291
BmuI	ACTGGG	1 cut(s)	934
BpiI	GAAGAC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	844
BpuMI	CCSGG	1 cut(s)	952
BsaJI	CCNNGG	2 cut(s)	950, 1192
BsaXI	ACNNNNNCTCC	2 cut(s)	868, 898
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 431, 1198
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	2 cut(s)	929, 1062
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	294, 482
BseBI	CCWGG	1 cut(s)	1274
BseDI	CCNNGG	2 cut(s)	950, 1192
BseGI	GGATG	3 cut(s)	10, 970, 1101
BseLI	CCNNNNNNNGG	3 cut(s)	116, 431, 1198
BseMI	GCAATG	2 cut(s)	294, 482
BseMII	CTCAG	3 cut(s)	288, 479, 1128
BseNI	ACTGG	2 cut(s)	929, 1062
BseRI	GAGGAG	1 cut(s)	826
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	217, 279, 694
BseYI	CCCAGC	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	956
BshFI	GGCC	2 cut(s)	436, 1203
BshNI	GGYRCC	2 cut(s)	90, 983
BsiEI	CGRYCG	1 cut(s)	956
BsiHKAI	GWGCWC	2 cut(s)	1154, 1255
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	570, 952
BslI	CCNNNNNNNGG	3 cut(s)	116, 431, 1198
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	436, 1203
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	3 cut(s)	95, 1154, 1255
Bsp143I	GATC	3 cut(s)	709, 1060, 1086
BspACI	CCGC	4 cut(s)	36, 248, 473, 887
BspANI	GGCC	2 cut(s)	436, 1203
BspCNI	CTCAG	3 cut(s)	289, 478, 1129
BspLI	GGNNCC	6 cut(s)	34, 92, 330, 353, 985, 1190
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	1 cut(s)	1235
BspPI	GGATC	2 cut(s)	717, 1068
BspQI	GCTCTTC	1 cut(s)	1260
BspT107I	GGYRCC	2 cut(s)	90, 983
BsrDI	GCAATG	2 cut(s)	294, 482
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	929, 1062
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	950, 1192
BssMI	GATC	3 cut(s)	709, 1060, 1086
BssT1I	CCWWGG	1 cut(s)	1192
Bst2UI	CCWGG	1 cut(s)	1274
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	1038, 1260
BstAPI	GCANNNNNTGC	1 cut(s)	1250
BstC8I	GCNNGC	3 cut(s)	494, 819, 982
BstDEI	CTNAG	6 cut(s)	297, 465, 601, 616, 942, 1137
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	10, 970, 1101
BstKTI	GATC	3 cut(s)	712, 1063, 1089
BstMBI	GATC	3 cut(s)	709, 1060, 1086
BstMCI	CGRYCG	1 cut(s)	956
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 661, 682, 1250
BstNI	CCWGG	1 cut(s)	1274
BstSCI	CCNGG	2 cut(s)	950, 1272
BstSFI	CTRYAG	1 cut(s)	819
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	217, 279, 694
BstV2I	GAAGAC	1 cut(s)	434
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	436, 1203
BtsCI	GGATG	3 cut(s)	10, 970, 1101
BtsI	GCAGTG	2 cut(s)	45, 127
BtsIMutI	CAGTG	4 cut(s)	45, 127, 545, 765
BveI	ACCTGC	1 cut(s)	1235
Cac8I	GCNNGC	3 cut(s)	494, 819, 982
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	3 cut(s)	33, 434, 1201
CseI	GACGC	1 cut(s)	983
Csp6I	GTAC	3 cut(s)	511, 1029, 1108
CviAII	CATG	3 cut(s)	431, 507, 1064
CviQI	GTAC	3 cut(s)	511, 1029, 1108
DdeI	CTNAG	6 cut(s)	297, 465, 601, 616, 942, 1137
DpnI	GATC	3 cut(s)	711, 1062, 1088
DpnII	GATC	3 cut(s)	709, 1060, 1086
DraI	TTTAAA	2 cut(s)	610, 721
Eam1104I	CTCTTC	2 cut(s)	1038, 1260
EarI	CTCTTC	2 cut(s)	1038, 1260
Eco130I	CCWWGG	1 cut(s)	1192
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	789, 1019, 1241
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	586
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	1201
EcoRI	GAATTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	1272
EcoRV	GATATC	1 cut(s)	742
EcoT14I	CCWWGG	1 cut(s)	1192
EcoT22I	ATGCAT	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	1192
FaeI	CATG	3 cut(s)	434, 510, 1067
FatI	CATG	3 cut(s)	430, 506, 1063
FauI	CCCGC	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	231, 293, 683
FokI	GGATG	3 cut(s)	17, 977, 1108
Fsp4HI	GCNGC	3 cut(s)	231, 293, 683
FspBI	CTAG	9 cut(s)	45, 171, 180, 215, 324, 575, 657, 735, 1004
GluI	GCNGC	3 cut(s)	231, 293, 683
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	436, 1203
HapII	CCGG	2 cut(s)	570, 952
HgaI	GACGC	1 cut(s)	983
Hin1II	CATG	3 cut(s)	434, 510, 1067
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	7 cut(s)	17, 26, 382, 779, 857, 1014, 1296
HpaII	CCGG	2 cut(s)	570, 952
HphI	GGTGA	4 cut(s)	89, 245, 761, 797
Hpy166II	GTNNAC	2 cut(s)	253, 700
Hpy188I	TCNGA	6 cut(s)	25, 356, 468, 501, 897, 1038
Hpy188III	TCNNGA	3 cut(s)	162, 861, 1155
Hpy8I	GTNNAC	2 cut(s)	253, 700
HpyAV	CCTTC	4 cut(s)	186, 700, 1192, 1214
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	3 cut(s)	664, 821, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 661, 682, 1250
HpyF3I	CTNAG	6 cut(s)	297, 465, 601, 616, 942, 1137
Hsp92II	CATG	3 cut(s)	434, 510, 1067
Kzo9I	GATC	3 cut(s)	709, 1060, 1086
LguI	GCTCTTC	1 cut(s)	1260
LmnI	GCTCC	2 cut(s)	357, 839
Lsp1109I	GCAGC	3 cut(s)	217, 279, 694
LweI	GCATC	2 cut(s)	1086, 1291
MaeI	CTAG	9 cut(s)	45, 171, 180, 215, 324, 575, 657, 735, 1004
MaeIII	GTNAC	4 cut(s)	623, 749, 854, 920
MalI	GATC	3 cut(s)	711, 1062, 1088
MboI	GATC	3 cut(s)	709, 1060, 1086
MboII	GAAGA	8 cut(s)	12, 92, 434, 469, 1023, 1025, 1237, 1247
MhlI	GDGCHC	3 cut(s)	95, 1154, 1255
MluCI	AATT	5 cut(s)	460, 801, 826, 1047, 1070
MlyI	GAGTC	1 cut(s)	851
MmeI	TCCRAC	1 cut(s)	988
Mph1103I	ATGCAT	1 cut(s)	666
MroXI	GAANNNNTTC	1 cut(s)	933
MseI	TTAA	6 cut(s)	195, 405, 609, 720, 825, 1124
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	685, 1136
MspI	CCGG	2 cut(s)	570, 952
MspR9I	CCNGG	2 cut(s)	952, 1274
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	1274
MwoI	GCNNNNNNNGC	4 cut(s)	106, 661, 682, 1250
NciI	CCSGG	1 cut(s)	952
NdeII	GATC	3 cut(s)	709, 1060, 1086
NlaIII	CATG	3 cut(s)	434, 510, 1067
NlaIV	GGNNCC	6 cut(s)	34, 92, 330, 353, 985, 1190
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	749, 854
NsiI	ATGCAT	1 cut(s)	666
PciSI	GCTCTTC	1 cut(s)	1260
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	6 cut(s)	17, 26, 382, 779, 1014, 1296
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	232, 294, 684
PleI	GAGTC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	851
PsiI	TTATAA	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	1272
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	1272
PspN4I	GGNNCC	6 cut(s)	34, 92, 330, 353, 985, 1190
PspPI	GGNCC	3 cut(s)	33, 434, 1201
PstI	CTGCAG	1 cut(s)	823
PvuII	CAGCTG	2 cut(s)	685, 1136
RsaI	GTAC	3 cut(s)	512, 1030, 1109
RsaNI	GTAC	3 cut(s)	511, 1029, 1108
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	1260
SaqAI	TTAA	6 cut(s)	195, 405, 609, 720, 825, 1124
SatI	GCNGC	3 cut(s)	231, 293, 683
Sau3AI	GATC	3 cut(s)	709, 1060, 1086
Sau96I	GGNCC	3 cut(s)	33, 434, 1201
ScaI	AGTACT	2 cut(s)	1030, 1109
SchI	GAGTC	1 cut(s)	851
ScrFI	CCNGG	2 cut(s)	952, 1274
SduI	GDGCHC	3 cut(s)	95, 1154, 1255
SfaNI	GCATC	2 cut(s)	1086, 1291
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	5 cut(s)	460, 801, 826, 1047, 1070
SsiI	CCGC	4 cut(s)	36, 248, 473, 887
SspMI	CTAG	9 cut(s)	45, 171, 180, 215, 324, 575, 657, 735, 1004
StyD4I	CCNGG	2 cut(s)	950, 1272
StyI	CCWWGG	1 cut(s)	1192
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	2 cut(s)	128, 1299
TaqII	GACCGA	1 cut(s)	1007
TasI	AATT	5 cut(s)	460, 801, 826, 1047, 1070
TatI	WGTACW	2 cut(s)	1028, 1107
TfiI	GAWTC	6 cut(s)	17, 26, 382, 779, 1014, 1296
Tru1I	TTAA	6 cut(s)	195, 405, 609, 720, 825, 1124
Tru9I	TTAA	6 cut(s)	195, 405, 609, 720, 825, 1124
TscAI	CASTG	4 cut(s)	45, 127, 545, 772
TseFI	GTSAC	2 cut(s)	749, 854
TseI	GCWGC	3 cut(s)	230, 292, 682
Tsp45I	GTSAC	2 cut(s)	749, 854
TspRI	CASTG	4 cut(s)	45, 127, 545, 772
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	33
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	3 cut(s)	460, 1047, 1070
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	9 cut(s)	45, 171, 180, 215, 324, 575, 657, 735, 1004
ZrmI	AGTACT	2 cut(s)	1030, 1109
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.