Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013199

Physical Location & Seq

Genomic Coordinates Forward (+)

79653154 .. 79656762

Gene Structure 3609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGATGGTGCTGGGGAGTCTTCTGATTCTGGGTCTGCAGTGTCTAGTGTGAAACCTATAGGAAATGGATTTTCTGGTGAAGATGATAGGTGCCCCAAGCAAGTGTCGCCTATTAGAGGCAGTGGGTCGAGGAATACAAGCCCTTTGGGTTGTGTAAGGTCAAGAAACACTAGCCCTTCTAGGCAAAAGGTGGTTAAGACAAAGCCGAGAGGATTAGATGAGGAAACGGCTGCCACATTTGGTAAAGCGGTTCACCCTGATGTTCAAATGGAGGATAATATATGGGCAATGCTGCCTGAGGACTTGTTGAATGAGATATTAGCTAGGGTTCCGCCATTTATGATATTCAGGCTCCGATGTGTTTGTAAGAGGTGGAATGCGATTCTACAAGATAAAAGCTTTATTAAGTTCCACTCTCAAGTGCCATCTCATGGGCCTTGTCTTCTCACATTTTGGAAGAATTCTCAGACCCCGCAATGCTCGGTGTTCAGCTTGCCTCTGAAAACATGGTACAGAATACCATTCACATTTTTACCACAGTGGGCGTTCTGGTTGGTTGGCTCATCTGCCGGTCTAGTTTGCTTCTCGGGGCTTGATGGCTTAGTTTTTAAAACCCTACAAAGGCAGCTGATAATGGTTGTTGATAGGAAGGATCGCTCATTTAAAGTTATAGCCACTAGTGATATCTATGGTGACAAATCCTTGCCCACTGAAGTATATGATTCAAAACTCAATAGTTGGTCAATTCACCAGATAATGCCCGCAGTTAATTTATGCTCCTCAAAGATGGCATATTGTGACTCAAGATTGTATTTGGAAACTCTTTCTCCGCTTGGTTTGATGATGTATCGGCTGGACACAGGTTACTGGGAACACATTCCAGCTAAGTTCCCCCGGTCGTTATTGGATGGTTATTTGGTTGCTGGCACCCAGAAGCGTCTGTTTCTAGTTGGAAGAATCGGTCTTTATAGTACTCTTCAGAGTATGAGAATTTGGGAACTGGATCATGCTAAATTTATATGGGTGGAGATCAGCAGGATGCCGCCAAAGTACTTTCGTTCTTTGTTAAGGTTATCAGCTGAGAGATTTGAGTGCTCTGGACAGGATAACTTGATTTGCTTCACATCTTGGAACCAAGGGAAGGGCCTTCTTTATGACGTGGATAAGAAGATGTGGTCTTGGATTGCAGGCTGTGCTCTTCAGTCATACAACAGCCAGGTTTGTTTTTATGAGCCAAGATTCGATGCTTCCATCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

419

Amino Acids

47.62

Weight (kDa)

9.07

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	95 - 133	7.9e-07	F-box-like
F-box	PF00646	96 - 135	8.1e-10	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15710 AT5G15710
fragaria_vesca	FvH4_6g46160
malus_domestica	MD09G1076600.v1.1
prunus_persica	Prupe.3G247500_v2.0.a1 Prupe.3G247500_v2.0.a1
pyrus_communis	pycom09g00380 pycom17g06740
rosa_chinensis	RchiOBHm_Chr2g0164611
rosa_laevigata	RLG00000021469
rosa_multiflora	Rmu_ssc0000076.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086460
rosa_rugosa	Rorug02G0509400
rosa_samantha	Rh2AG577000 Rh2BG588100 Rh2CG558900 Rh2DG598700
rosa_wichuraiana	Rw2G047910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	90, 926
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	6 cut(s)	248, 332, 473, 762, 830, 1043
AclWI	GGATC	2 cut(s)	660, 1011
AcsI	RAATTY	3 cut(s)	460, 990, 1013
AcuI	CTGAAG	3 cut(s)	732, 962, 1184
AfaI	GTAC	3 cut(s)	512, 973, 1052
AfiI	CCNNNNNNNGG	4 cut(s)	116, 431, 621, 1141
AgsI	TTSAA	3 cut(s)	266, 310, 726
AhlI	ACTAGT	1 cut(s)	677
AjiI	CACGTC	1 cut(s)	1159
AjnI	CCWGG	1 cut(s)	1215
AluBI	AGCT	6 cut(s)	323, 399, 492, 628, 884, 1079
AluI	AGCT	6 cut(s)	323, 399, 492, 628, 884, 1079
Alw21I	GWGCWC	2 cut(s)	1097, 1198
AlwI	GGATC	2 cut(s)	660, 1011
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	2 cut(s)	434, 1144
ApeKI	GCWGC	3 cut(s)	230, 292, 625
ApoI	RAATTY	3 cut(s)	460, 990, 1013
Asp700I	GAANNNNTTC	1 cut(s)	876
AspS9I	GGNCC	2 cut(s)	434, 1144
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	4 cut(s)	89, 245, 704, 740
AvaI	CYCGRG	1 cut(s)	586
AxyI	CCTNAGG	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	2 cut(s)	90, 926
BbsI	GAAGAC	2 cut(s)	12, 434
Bbv12I	GWGCWC	2 cut(s)	1097, 1198
BbvI	GCAGC	3 cut(s)	217, 279, 637
BccI	CCATC	5 cut(s)	433, 590, 781, 902, 1259
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	1217
BcnI	CCSGG	1 cut(s)	895
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	7 cut(s)	45, 171, 180, 324, 575, 678, 947
BfmI	CTRYAG	2 cut(s)	36, 57
BisI	GCNGC	4 cut(s)	231, 293, 626, 1043
BlsI	GCNGC	4 cut(s)	232, 294, 627, 1044
BmcAI	AGTACT	2 cut(s)	973, 1052
Bme1390I	CCNGG	2 cut(s)	895, 1217
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	1159
BmgT120I	GGNCC	2 cut(s)	434, 1144
BmiI	GGNNCC	5 cut(s)	92, 330, 353, 928, 1133
BmrFI	CCNGG	2 cut(s)	895, 1217
BmrI	ACTGGG	1 cut(s)	877
BmsI	GCATC	2 cut(s)	1029, 1234
BmuI	ACTGGG	1 cut(s)	877
BpiI	GAAGAC	2 cut(s)	12, 434
BpuEI	CTTGAG	2 cut(s)	402, 787
BpuMI	CCSGG	1 cut(s)	895
BsaJI	CCNNGG	2 cut(s)	893, 1135
BsaXI	ACNNNNNCTCC	2 cut(s)	811, 841
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 431, 621, 1141
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	2 cut(s)	872, 1005
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	294, 482
BseBI	CCWGG	1 cut(s)	1217
BseDI	CCNNGG	2 cut(s)	893, 1135
BseGI	GGATG	3 cut(s)	10, 913, 1044
BseLI	CCNNNNNNNGG	4 cut(s)	116, 431, 621, 1141
BseMI	GCAATG	2 cut(s)	294, 482
BseMII	CTCAG	3 cut(s)	288, 479, 1071
BseNI	ACTGG	2 cut(s)	872, 1005
BseRI	GAGGAG	1 cut(s)	769
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	217, 279, 637
BseYI	CCCAGC	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	899
BshFI	GGCC	2 cut(s)	436, 1146
BshNI	GGYRCC	2 cut(s)	90, 926
BsiEI	CGRYCG	1 cut(s)	899
BsiHKAI	GWGCWC	2 cut(s)	1097, 1198
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	570, 895
BslI	CCNNNNNNNGG	4 cut(s)	116, 431, 621, 1141
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	436, 1146
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	3 cut(s)	95, 1097, 1198
Bsp143I	GATC	3 cut(s)	652, 1003, 1029
BspACI	CCGC	6 cut(s)	248, 332, 473, 762, 830, 1043
BspANI	GGCC	2 cut(s)	436, 1146
BspCNI	CTCAG	3 cut(s)	289, 478, 1072
BspLI	GGNNCC	5 cut(s)	92, 330, 353, 928, 1133
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	2 cut(s)	660, 1011
BspQI	GCTCTTC	1 cut(s)	1203
BspT107I	GGYRCC	2 cut(s)	90, 926
BsrDI	GCAATG	2 cut(s)	294, 482
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	872, 1005
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	2 cut(s)	893, 1135
BssMI	GATC	3 cut(s)	652, 1003, 1029
BssT1I	CCWWGG	1 cut(s)	1135
Bst2UI	CCWGG	1 cut(s)	1217
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	981, 1203
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstC8I	GCNNGC	4 cut(s)	494, 762, 925, 1189
BstDEI	CTNAG	5 cut(s)	297, 465, 601, 885, 1080
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	10, 913, 1044
BstKTI	GATC	3 cut(s)	655, 1006, 1032
BstMBI	GATC	3 cut(s)	652, 1003, 1029
BstMCI	CGRYCG	1 cut(s)	899
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 1193
BstNI	CCWGG	1 cut(s)	1217
BstSCI	CCNGG	2 cut(s)	893, 1215
BstSFI	CTRYAG	2 cut(s)	36, 57
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	217, 279, 637
BstV2I	GAAGAC	2 cut(s)	12, 434
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	436, 1146
BtrI	CACGTC	1 cut(s)	1159
BtsCI	GGATG	3 cut(s)	10, 913, 1044
BtsI	GCAGTG	2 cut(s)	45, 127
BtsIMutI	CAGTG	4 cut(s)	45, 127, 545, 708
Cac8I	GCNNGC	4 cut(s)	494, 762, 925, 1189
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	434, 1144
CseI	GACGC	1 cut(s)	926
Csp6I	GTAC	3 cut(s)	511, 972, 1051
CviAII	CATG	3 cut(s)	431, 507, 1007
CviQI	GTAC	3 cut(s)	511, 972, 1051
DdeI	CTNAG	5 cut(s)	297, 465, 601, 885, 1080
DpnI	GATC	3 cut(s)	654, 1005, 1031
DpnII	GATC	3 cut(s)	652, 1003, 1029
DraI	TTTAAA	2 cut(s)	610, 664
Eam1104I	CTCTTC	2 cut(s)	981, 1203
EarI	CTCTTC	2 cut(s)	981, 1203
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	1135
Eco32I	GATATC	1 cut(s)	685
Eco57I	CTGAAG	3 cut(s)	732, 962, 1184
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	586
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	1144
EcoRI	GAATTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	1215
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	1135
ErhI	CCWWGG	1 cut(s)	1135
FaeI	CATG	3 cut(s)	434, 510, 1010
FatI	CATG	3 cut(s)	430, 506, 1006
FauI	CCCGC	2 cut(s)	480, 769
Fnu4HI	GCNGC	4 cut(s)	231, 293, 626, 1043
FokI	GGATG	3 cut(s)	17, 920, 1051
Fsp4HI	GCNGC	4 cut(s)	231, 293, 626, 1043
FspBI	CTAG	7 cut(s)	45, 171, 180, 324, 575, 678, 947
GluI	GCNGC	4 cut(s)	231, 293, 626, 1043
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	436, 1146
HapII	CCGG	2 cut(s)	570, 895
HgaI	GACGC	1 cut(s)	926
Hin1II	CATG	3 cut(s)	434, 510, 1010
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	7 cut(s)	17, 26, 382, 722, 800, 957, 1239
HpaII	CCGG	2 cut(s)	570, 895
HphI	GGTGA	4 cut(s)	89, 245, 704, 740
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	5 cut(s)	25, 356, 468, 501, 981
Hpy188III	TCNNGA	3 cut(s)	162, 804, 1098
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	4 cut(s)	186, 643, 1135, 1157
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4IV	ACGT	1 cut(s)	1158
HpyCH4V	TGCA	2 cut(s)	38, 1187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 1193
HpyF3I	CTNAG	5 cut(s)	297, 465, 601, 885, 1080
HpySE526I	ACGT	1 cut(s)	1158
Hsp92II	CATG	3 cut(s)	434, 510, 1010
Kzo9I	GATC	3 cut(s)	652, 1003, 1029
LguI	GCTCTTC	1 cut(s)	1203
LmnI	GCTCC	2 cut(s)	357, 782
Lsp1109I	GCAGC	3 cut(s)	217, 279, 637
LweI	GCATC	2 cut(s)	1029, 1234
MaeI	CTAG	7 cut(s)	45, 171, 180, 324, 575, 678, 947
MaeII	ACGT	1 cut(s)	1158
MaeIII	GTNAC	3 cut(s)	692, 797, 863
MalI	GATC	3 cut(s)	654, 1005, 1031
MboI	GATC	3 cut(s)	652, 1003, 1029
MboII	GAAGA	8 cut(s)	12, 92, 434, 469, 966, 968, 1180, 1190
MhlI	GDGCHC	3 cut(s)	95, 1097, 1198
MluCI	AATT	5 cut(s)	460, 744, 769, 990, 1013
MlyI	GAGTC	2 cut(s)	26, 794
MmeI	TCCRAC	1 cut(s)	931
MnlI	CCTC	9 cut(s)	110, 123, 203, 214, 265, 292, 363, 507, 790
MroXI	GAANNNNTTC	1 cut(s)	876
MseI	TTAA	6 cut(s)	195, 405, 609, 663, 768, 1067
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	628, 1079
MspI	CCGG	2 cut(s)	570, 895
MspR9I	CCNGG	2 cut(s)	895, 1217
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	1217
MwoI	GCNNNNNNNGC	2 cut(s)	106, 1193
NciI	CCSGG	1 cut(s)	895
NdeII	GATC	3 cut(s)	652, 1003, 1029
NlaIII	CATG	3 cut(s)	434, 510, 1010
NlaIV	GGNNCC	5 cut(s)	92, 330, 353, 928, 1133
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	692, 797
PciSI	GCTCTTC	1 cut(s)	1203
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	876
PfeI	GAWTC	5 cut(s)	26, 382, 722, 957, 1239
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	4 cut(s)	232, 294, 627, 1044
PleI	GAGTC	2 cut(s)	25, 794
PpsI	GAGTC	2 cut(s)	25, 794
Psp6I	CCWGG	1 cut(s)	1215
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	1215
PspN4I	GGNNCC	5 cut(s)	92, 330, 353, 928, 1133
PspPI	GGNCC	2 cut(s)	434, 1144
PstI	CTGCAG	1 cut(s)	40
PvuII	CAGCTG	2 cut(s)	628, 1079
RsaI	GTAC	3 cut(s)	512, 973, 1052
RsaNI	GTAC	3 cut(s)	511, 972, 1051
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	1203
SaqAI	TTAA	6 cut(s)	195, 405, 609, 663, 768, 1067
SatI	GCNGC	4 cut(s)	231, 293, 626, 1043
Sau3AI	GATC	3 cut(s)	652, 1003, 1029
Sau96I	GGNCC	2 cut(s)	434, 1144
ScaI	AGTACT	2 cut(s)	973, 1052
SchI	GAGTC	2 cut(s)	26, 794
ScrFI	CCNGG	2 cut(s)	895, 1217
SduI	GDGCHC	3 cut(s)	95, 1097, 1198
SfaNI	GCATC	2 cut(s)	1029, 1234
SfcI	CTRYAG	2 cut(s)	36, 57
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	417, 802
SmoI	CTYRAG	2 cut(s)	417, 802
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	5 cut(s)	460, 744, 769, 990, 1013
SsiI	CCGC	6 cut(s)	248, 332, 473, 762, 830, 1043
SspMI	CTAG	7 cut(s)	45, 171, 180, 324, 575, 678, 947
StyD4I	CCNGG	2 cut(s)	893, 1215
StyI	CCWWGG	1 cut(s)	1135
TaaI	ACNGT	1 cut(s)	540
TaiI	ACGT	1 cut(s)	1161
TaqI	TCGA	2 cut(s)	128, 1242
TaqII	GACCGA	1 cut(s)	950
TasI	AATT	5 cut(s)	460, 744, 769, 990, 1013
TatI	WGTACW	2 cut(s)	971, 1050
TauI	GCSGC	1 cut(s)	1045
TfiI	GAWTC	5 cut(s)	26, 382, 722, 957, 1239
Tru1I	TTAA	6 cut(s)	195, 405, 609, 663, 768, 1067
Tru9I	TTAA	6 cut(s)	195, 405, 609, 663, 768, 1067
TscAI	CASTG	4 cut(s)	45, 127, 545, 715
TseFI	GTSAC	2 cut(s)	692, 797
TseI	GCWGC	3 cut(s)	230, 292, 625
Tsp45I	GTSAC	2 cut(s)	692, 797
TspRI	CASTG	4 cut(s)	45, 127, 545, 715
Van91I	CCANNNNNTGG	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	3 cut(s)	460, 990, 1013
XmnI	GAANNNNTTC	1 cut(s)	876
XspI	CTAG	7 cut(s)	45, 171, 180, 324, 575, 678, 947
ZrmI	AGTACT	2 cut(s)	973, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.