Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013199

Physical Location & Seq

Genomic Coordinates Forward (+)

75688651 .. 75691043

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGATGGTGCTGGGGAATCTTGTGATTCTGGGTCTGCAGCGTCTAGTGTGAAACCTATGGGAAATGGGTTTTCTGGTGAAGATGATAGGTGCCCCAAGCAAGTGTCGCCTGTTAGAGGCAGTGGGTCGAGGAATACAAGCCCTTTGGGTTGTGTAAGGTCAAGAAACACTAGTCCTTCTAGGCAAAAGGTGGTTAAGACAAAGCCGAGAGGATTAGATGAGGAAACGGCTGCCACATTTGGTAAAGCGGTTCACCCTGATGTTCAAATGGAGGATAATATATGGGCAATGCTGCCTGAGGACCTGTTGAATGAGATATTAGCGAGGGTTCCGCCATTTATGATATTCAGGCTCCGATGTGTTTGTAAAAGGTGGAATGCGATTCTACAAGATAAAAGCTTTATTAAGTTCCACTCACAAGTGCCATCTCATGGGCCTTGTCTTCTCACATTTTGGAAGAATTCTCAGACCCCGCAATGCTCGGTGTTCAGCTTGCCTCTGAAAACATGGTACAGAATTCCATTCACATTTTTACCACAGTGGGCGTTCTGGTTGGTTGGCTCTTCTGCTGGTCTAGTTTGTTTCTCGGGGCTTGATGGCTTAGTTTTTAAAACCTTAGTTTGTAACCCTCTCACACAAACTTGGAGGACTTTGCCTAGTATGCATTATAATCAGCAAAGGCAGCTGATAATGGTTGTTGATAGGAAGGATCGCTCATTTAAAGTTATAGCCACTAGTGATATCTATGGTGACAAATCCTTGCCCACTGAAGTATATGATTCAAAACTCAATAGTTGGTCAATTCACCAGATAATGCCCGCAGTTAATTTATGCTCCTCAAAGATGGCATATTGTGACTCAAGATTGTATTTGGAAACTCTTTCTCCGCTTGGTCTGATGATGTATCGGCTGGACACAGGTTACTGGGAACACATTCCAGCCAAGTTCCCCCGGTCGTTATTGGATGGTTATTTGGTTGCTGGCACCCAGAAGCGTCTGTTTCTAGTTGGAAGAATCGGTCTTTATAGTACTCTTCAGAGTATGAGAATTTGGGAACTGGATCATGCTAAATTTATATGGGTGGAGATCAGCAGGATGCCGCCAAAGTACTTTCGTTCTTTGTTAAGGTTATCAGCTGAGAGATTTGAGTGCTCTGGACAGGATAACTTGATTTGCTTCACATCTTGGAACCAAGGGAAGGGCCTTCTTTATGACGTGGATAAGAAGATGTGGTCTTGGATTGCAGGCTGTGCTCTTCAGTCATACAACAGCCAGGCCAAGTGTGTTGATACAGCTTTCCTTAACCCTAAAAAGCTTCACACCGTGCAGGGGTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

447

Amino Acids

50.63

Weight (kDa)

9.25

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	95 - 133	8.5e-07	F-box-like
F-box	PF00646	96 - 135	8.8e-10	F-box domain
Beta-prop_KIB1-4	PF03478	164 - 394	1.4e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15710 AT5G15710
fragaria_vesca	FvH4_6g46160
malus_domestica	MD09G1076600.v1.1
prunus_persica	Prupe.3G247500_v2.0.a1 Prupe.3G247500_v2.0.a1
pyrus_communis	pycom09g00380 pycom17g06740
rosa_chinensis	RchiOBHm_Chr2g0164611
rosa_laevigata	RLG00000021469
rosa_multiflora	Rmu_ssc0000076.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086460
rosa_rugosa	Rorug02G0509400
rosa_samantha	Rh2AG577000 Rh2BG588100 Rh2CG558900 Rh2DG598700
rosa_wichuraiana	Rw2G047910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AccB1I	GGYRCC	2 cut(s)	90, 983
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	6 cut(s)	248, 332, 473, 819, 887, 1100
AclWI	GGATC	2 cut(s)	717, 1068
AcsI	RAATTY	4 cut(s)	460, 516, 1047, 1070
AcuI	CTGAAG	3 cut(s)	789, 1019, 1241
AdeI	CACNNNGTG	1 cut(s)	1324
AfaI	GTAC	4 cut(s)	512, 1030, 1109, 1334
AfiI	CCNNNNNNNGG	4 cut(s)	116, 431, 1198, 1329
AgsI	TTSAA	3 cut(s)	266, 310, 783
AhlI	ACTAGT	2 cut(s)	170, 734
AjiI	CACGTC	1 cut(s)	1216
AjnI	CCWGG	1 cut(s)	1272
AluBI	AGCT	6 cut(s)	399, 492, 685, 1136, 1295, 1315
AluI	AGCT	6 cut(s)	399, 492, 685, 1136, 1295, 1315
Alw21I	GWGCWC	2 cut(s)	1154, 1255
AlwI	GGATC	2 cut(s)	717, 1068
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	3 cut(s)	434, 1201, 1275
ApeKI	GCWGC	4 cut(s)	38, 230, 292, 682
ApoI	RAATTY	4 cut(s)	460, 516, 1047, 1070
Asp700I	GAANNNNTTC	1 cut(s)	933
AspS9I	GGNCC	3 cut(s)	301, 434, 1201
AsuC2I	CCSGG	1 cut(s)	952
AsuHPI	GGTGA	4 cut(s)	89, 245, 761, 797
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	95
BanI	GGYRCC	2 cut(s)	90, 983
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	2 cut(s)	1154, 1255
BbvI	GCAGC	4 cut(s)	50, 217, 279, 694
BccI	CCATC	4 cut(s)	433, 590, 838, 959
BceAI	ACGGC	1 cut(s)	243
BciT130I	CCWGG	1 cut(s)	1274
BcnI	CCSGG	1 cut(s)	952
BcuI	ACTAGT	2 cut(s)	170, 734
BfaI	CTAG	7 cut(s)	45, 171, 180, 575, 657, 735, 1004
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	5 cut(s)	39, 231, 293, 683, 1100
BlsI	GCNGC	5 cut(s)	40, 232, 294, 684, 1101
BmcAI	AGTACT	2 cut(s)	1030, 1109
Bme1390I	CCNGG	2 cut(s)	952, 1274
Bme18I	GGWCC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	1216
BmgT120I	GGNCC	3 cut(s)	301, 434, 1201
BmiI	GGNNCC	5 cut(s)	92, 330, 353, 985, 1190
BmrFI	CCNGG	2 cut(s)	952, 1274
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	1 cut(s)	1086
BmuI	ACTGGG	1 cut(s)	934
BpiI	GAAGAC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	844
BpuMI	CCSGG	1 cut(s)	952
BsaJI	CCNNGG	2 cut(s)	950, 1192
BsaXI	ACNNNNNCTCC	2 cut(s)	868, 898
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 431, 1198, 1329
Bse1I	ACTGG	2 cut(s)	929, 1062
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	294, 482
BseBI	CCWGG	1 cut(s)	1274
BseDI	CCNNGG	2 cut(s)	950, 1192
BseGI	GGATG	3 cut(s)	10, 970, 1101
BseLI	CCNNNNNNNGG	4 cut(s)	116, 431, 1198, 1329
BseMI	GCAATG	2 cut(s)	294, 482
BseMII	CTCAG	3 cut(s)	288, 479, 1128
BseNI	ACTGG	2 cut(s)	929, 1062
BseRI	GAGGAG	1 cut(s)	826
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	4 cut(s)	50, 217, 279, 694
BseYI	CCCAGC	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	956
BshFI	GGCC	3 cut(s)	436, 1203, 1277
BshNI	GGYRCC	2 cut(s)	90, 983
BsiEI	CGRYCG	1 cut(s)	956
BsiHKAI	GWGCWC	2 cut(s)	1154, 1255
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	952
BslI	CCNNNNNNNGG	4 cut(s)	116, 431, 1198, 1329
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	436, 1203, 1277
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	3 cut(s)	95, 1154, 1255
Bsp143I	GATC	3 cut(s)	709, 1060, 1086
BspACI	CCGC	6 cut(s)	248, 332, 473, 819, 887, 1100
BspANI	GGCC	3 cut(s)	436, 1203, 1277
BspCNI	CTCAG	3 cut(s)	289, 478, 1129
BspLI	GGNNCC	5 cut(s)	92, 330, 353, 985, 1190
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	2 cut(s)	717, 1068
BspQI	GCTCTTC	2 cut(s)	568, 1260
BspT107I	GGYRCC	2 cut(s)	90, 983
BsrDI	GCAATG	2 cut(s)	294, 482
BsrI	ACTGG	2 cut(s)	929, 1062
BssECI	CCNNGG	2 cut(s)	950, 1192
BssMI	GATC	3 cut(s)	709, 1060, 1086
BssT1I	CCWWGG	1 cut(s)	1192
Bst2UI	CCWGG	1 cut(s)	1274
Bst4CI	ACNGT	2 cut(s)	540, 1324
Bst6I	CTCTTC	3 cut(s)	568, 1038, 1260
BstAPI	GCANNNNNTGC	1 cut(s)	1250
BstC8I	GCNNGC	4 cut(s)	494, 819, 982, 1246
BstDEI	CTNAG	5 cut(s)	297, 465, 601, 616, 1137
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	10, 970, 1101
BstKTI	GATC	3 cut(s)	712, 1063, 1089
BstMBI	GATC	3 cut(s)	709, 1060, 1086
BstMCI	CGRYCG	1 cut(s)	956
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 661, 682, 1250
BstNI	CCWGG	1 cut(s)	1274
BstSCI	CCNGG	2 cut(s)	950, 1272
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	50, 217, 279, 694
BstV2I	GAAGAC	1 cut(s)	434
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	436, 1203, 1277
BtrI	CACGTC	1 cut(s)	1216
BtsCI	GGATG	3 cut(s)	10, 970, 1101
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	3 cut(s)	127, 545, 765
Cac8I	GCNNGC	4 cut(s)	494, 819, 982, 1246
Cfr13I	GGNCC	3 cut(s)	301, 434, 1201
CseI	GACGC	2 cut(s)	30, 983
Csp6I	GTAC	4 cut(s)	511, 1029, 1108, 1333
CviAII	CATG	3 cut(s)	431, 507, 1064
CviQI	GTAC	4 cut(s)	511, 1029, 1108, 1333
DdeI	CTNAG	5 cut(s)	297, 465, 601, 616, 1137
DpnI	GATC	3 cut(s)	711, 1062, 1088
DpnII	GATC	3 cut(s)	709, 1060, 1086
DraI	TTTAAA	2 cut(s)	610, 721
DraIII	CACNNNGTG	1 cut(s)	1324
Eam1104I	CTCTTC	3 cut(s)	568, 1038, 1260
EarI	CTCTTC	3 cut(s)	568, 1038, 1260
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	1192
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	301
Eco57I	CTGAAG	3 cut(s)	789, 1019, 1241
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	586
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	2 cut(s)	301, 1201
EcoRI	GAATTC	2 cut(s)	460, 516
EcoRII	CCWGG	1 cut(s)	1272
EcoRV	GATATC	1 cut(s)	742
EcoT14I	CCWWGG	1 cut(s)	1192
EcoT22I	ATGCAT	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	1192
FaeI	CATG	3 cut(s)	434, 510, 1067
FatI	CATG	3 cut(s)	430, 506, 1063
FauI	CCCGC	2 cut(s)	480, 826
Fnu4HI	GCNGC	5 cut(s)	39, 231, 293, 683, 1100
FokI	GGATG	3 cut(s)	17, 977, 1108
Fsp4HI	GCNGC	5 cut(s)	39, 231, 293, 683, 1100
FspBI	CTAG	7 cut(s)	45, 171, 180, 575, 657, 735, 1004
GluI	GCNGC	5 cut(s)	39, 231, 293, 683, 1100
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	436, 1203, 1277
HapII	CCGG	1 cut(s)	952
HgaI	GACGC	2 cut(s)	30, 983
Hin1II	CATG	3 cut(s)	434, 510, 1067
HindIII	AAGCTT	2 cut(s)	397, 1313
HinfI	GANTC	6 cut(s)	17, 26, 382, 779, 857, 1014
HpaII	CCGG	1 cut(s)	952
HphI	GGTGA	4 cut(s)	89, 245, 761, 797
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	5 cut(s)	356, 468, 501, 897, 1038
Hpy188III	TCNNGA	3 cut(s)	162, 861, 1155
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	4 cut(s)	186, 700, 1192, 1214
HpyCH4III	ACNGT	2 cut(s)	540, 1324
HpyCH4IV	ACGT	1 cut(s)	1215
HpyCH4V	TGCA	4 cut(s)	38, 664, 1244, 1327
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 661, 682, 1250
HpyF3I	CTNAG	5 cut(s)	297, 465, 601, 616, 1137
HpySE526I	ACGT	1 cut(s)	1215
Hsp92II	CATG	3 cut(s)	434, 510, 1067
Kzo9I	GATC	3 cut(s)	709, 1060, 1086
LguI	GCTCTTC	2 cut(s)	568, 1260
LmnI	GCTCC	2 cut(s)	357, 839
Lsp1109I	GCAGC	4 cut(s)	50, 217, 279, 694
LweI	GCATC	1 cut(s)	1086
MaeI	CTAG	7 cut(s)	45, 171, 180, 575, 657, 735, 1004
MaeII	ACGT	1 cut(s)	1215
MaeIII	GTNAC	4 cut(s)	623, 749, 854, 920
MalI	GATC	3 cut(s)	711, 1062, 1088
MboI	GATC	3 cut(s)	709, 1060, 1086
MboII	GAAGA	8 cut(s)	92, 434, 469, 555, 1023, 1025, 1237, 1247
MhlI	GDGCHC	3 cut(s)	95, 1154, 1255
MluCI	AATT	6 cut(s)	460, 516, 801, 826, 1047, 1070
MlyI	GAGTC	1 cut(s)	851
MmeI	TCCRAC	1 cut(s)	988
Mph1103I	ATGCAT	1 cut(s)	666
MroXI	GAANNNNTTC	1 cut(s)	933
MseI	TTAA	7 cut(s)	195, 405, 609, 720, 825, 1124, 1302
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	685, 1136
MspI	CCGG	1 cut(s)	952
MspR9I	CCNGG	2 cut(s)	952, 1274
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	1274
MwoI	GCNNNNNNNGC	4 cut(s)	106, 661, 682, 1250
NciI	CCSGG	1 cut(s)	952
NdeII	GATC	3 cut(s)	709, 1060, 1086
NlaIII	CATG	3 cut(s)	434, 510, 1067
NlaIV	GGNNCC	5 cut(s)	92, 330, 353, 985, 1190
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	749, 854
NsiI	ATGCAT	1 cut(s)	666
PciSI	GCTCTTC	2 cut(s)	568, 1260
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	5 cut(s)	17, 26, 382, 779, 1014
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	5 cut(s)	40, 232, 294, 684, 1101
PleI	GAGTC	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	851
PpuMI	RGGWCCY	1 cut(s)	301
PsiI	TTATAA	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	1272
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	1272
PspN4I	GGNNCC	5 cut(s)	92, 330, 353, 985, 1190
PspPI	GGNCC	3 cut(s)	301, 434, 1201
PspPPI	RGGWCCY	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	40
PvuII	CAGCTG	2 cut(s)	685, 1136
RsaI	GTAC	4 cut(s)	512, 1030, 1109, 1334
RsaNI	GTAC	4 cut(s)	511, 1029, 1108, 1333
RseI	CAYNNNNRTG	1 cut(s)	258
SapI	GCTCTTC	2 cut(s)	568, 1260
SaqAI	TTAA	7 cut(s)	195, 405, 609, 720, 825, 1124, 1302
SatI	GCNGC	5 cut(s)	39, 231, 293, 683, 1100
Sau3AI	GATC	3 cut(s)	709, 1060, 1086
Sau96I	GGNCC	3 cut(s)	301, 434, 1201
ScaI	AGTACT	2 cut(s)	1030, 1109
SchI	GAGTC	1 cut(s)	851
ScrFI	CCNGG	2 cut(s)	952, 1274
SduI	GDGCHC	3 cut(s)	95, 1154, 1255
SfaNI	GCATC	1 cut(s)	1086
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
SpeI	ACTAGT	2 cut(s)	170, 734
Sse9I	AATT	6 cut(s)	460, 516, 801, 826, 1047, 1070
SsiI	CCGC	6 cut(s)	248, 332, 473, 819, 887, 1100
SspMI	CTAG	7 cut(s)	45, 171, 180, 575, 657, 735, 1004
StyD4I	CCNGG	2 cut(s)	950, 1272
StyI	CCWWGG	1 cut(s)	1192
TaaI	ACNGT	2 cut(s)	540, 1324
TaiI	ACGT	1 cut(s)	1218
TaqI	TCGA	1 cut(s)	128
TaqII	GACCGA	1 cut(s)	1007
TasI	AATT	6 cut(s)	460, 516, 801, 826, 1047, 1070
TatI	WGTACW	2 cut(s)	1028, 1107
TauI	GCSGC	1 cut(s)	1102
TfiI	GAWTC	5 cut(s)	17, 26, 382, 779, 1014
Tru1I	TTAA	7 cut(s)	195, 405, 609, 720, 825, 1124, 1302
Tru9I	TTAA	7 cut(s)	195, 405, 609, 720, 825, 1124, 1302
TscAI	CASTG	3 cut(s)	127, 545, 772
TseFI	GTSAC	2 cut(s)	749, 854
TseI	GCWGC	4 cut(s)	38, 230, 292, 682
Tsp45I	GTSAC	2 cut(s)	749, 854
TspRI	CASTG	3 cut(s)	127, 545, 772
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	301
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	4 cut(s)	460, 516, 1047, 1070
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	7 cut(s)	45, 171, 180, 575, 657, 735, 1004
ZrmI	AGTACT	2 cut(s)	1030, 1109
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.