Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000076.1

Orthogroup ID

OG0013199

Physical Location & Seq

Genomic Coordinates Forward (+)

30400 .. 34216

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000076.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

atggatggtgctggggagtcttctgattctgggtctgcagtgtctagtgtgaaacctataggaaatgggttttctggtgaagatgataggtgccccaagcaagtgtcgcctattagaggcagtgggtcgaggaatacaagccctttgggttgtgtaaggtcaagaaacactagcccttctaggcaaaaggtggttaagacaaagccgagaggattagatgaggaaacggctgccacatttggtaaagcggttcaccctgatgttcaaatggaggataatatatgggcaatgctgcctgaggacttgttgaatgagatattagctagggttccgccatttatgatattcaggctccgatgtgtttgtaagaggtggaatgcgattctacaagataaaagctttattaagttccactctcaagtgccatctcatgggccttgtcttctcacattttggaagaattctcagaccccgcaatgctcggtgttcagcttgcctctgaaaacatggtacagaataccattcacatttttaccacagtgggcgttctggttggttggctcatctgccggtctagtttgcttctcggggcttgatggcttagtttttaaaaccctagtgtgtaaccctctcacacaaacttggaggactttgcctagtatgcattataatcagcaaaggcagctgataatggttgttgataggaaggatcgctcatttaaagttatagccactagtgatatctatggtgacaaatccttgcccactgaagtatatgattcaaaactcaatagttggtcaattcaccagataatgcccgcagttaatttatgctcctcaaagatggcatattgtgactcaagattgtatttggaaactctttctccgcttggtttgatgatgtatcggctggacacaggttactgggaacacattccagctaagttcccccggtcgttattggatggttatttggttgctggcacccagaagcgtctgtttctagttggaagaatcgacgctaatctcggaacaatgagggctgccaaggctaaggcgggagcaagagccctgaaacctgtcgatgatgggagagttgggaaacgaaaggctgctgctgctccagttgataagagtagcaaaggaaaggccaagcagacaaagaaggccaagaaagaccccaacaagcctaagaggccacctagtgcctttttcgtgttccttggtcagttcagggaagagttcaagaaaaagaaccctaatgtgaaaggggtagcagctgttggaaaagctggaggagaaaagtggagatccctgtctgatgctgaaaaagctccatatgaagctgagtctgcaaaagcaaagactgagtatgaaaagcagctgaaaatctatgacaaaaagcagagtgcacctgatgatggtgatgaagagtcagagaggtcaagatctgaagtgcatgatgaagacgatgaggctagtggggaggaggcgcagccaaaagcggaggaagcagaggaggaagaggtggatgacgaagatgaaggggaggacgagggtgaagaagaggaagatgacgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

527

Amino Acids

58.77

Weight (kDa)

7.04

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15710 AT5G15710
fragaria_vesca	FvH4_6g46160
malus_domestica	MD09G1076600.v1.1
prunus_persica	Prupe.3G247500_v2.0.a1 Prupe.3G247500_v2.0.a1
pyrus_communis	pycom09g00380 pycom17g06740
rosa_chinensis	RchiOBHm_Chr2g0164611
rosa_laevigata	RLG00000021469
rosa_multiflora	Rmu_ssc0000076.1_g000006
rosa_roxburghii	Rroxscaffold_2G00086460
rosa_rugosa	Rorug02G0509400
rosa_samantha	Rh2AG577000 Rh2BG588100 Rh2CG558900 Rh2DG598700
rosa_wichuraiana	Rw2G047910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AccB1I	GGYRCC	2 cut(s)	90, 983
AccB7I	CCANNNNNTGG	1 cut(s)	431
AciI	CCGC	7 cut(s)	248, 332, 473, 819, 887, 1058, 1505
AclWI	GGATC	2 cut(s)	717, 1305
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	2 cut(s)	789, 1473
AdeI	CACNNNGTG	1 cut(s)	1205
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	3 cut(s)	116, 431, 1421
AgsI	TTSAA	4 cut(s)	266, 310, 783, 1246
AhlI	ACTAGT	1 cut(s)	734
Alw21I	GWGCWC	1 cut(s)	1414
Alw44I	GTGCAC	1 cut(s)	1410
AlwI	GGATC	2 cut(s)	717, 1305
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	4 cut(s)	434, 1149, 1167, 1196
ApaLI	GTGCAC	1 cut(s)	1410
ApoI	RAATTY	1 cut(s)	460
Asp700I	GAANNNNTTC	1 cut(s)	933
AspLEI	GCGC	1 cut(s)	1495
AspS9I	GGNCC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	952
AsuHPI	GGTGA	6 cut(s)	89, 245, 761, 797, 1436, 1571
AvaI	CYCGRG	1 cut(s)	586
AxyI	CCTNAGG	1 cut(s)	297
BaeGI	GKGCMC	2 cut(s)	95, 1414
BanI	GGYRCC	2 cut(s)	90, 983
BanII	GRGCYC	1 cut(s)	1072
BbsI	GAAGAC	3 cut(s)	12, 434, 1473
Bbv12I	GWGCWC	1 cut(s)	1414
BccI	CCATC	6 cut(s)	433, 590, 838, 959, 1082, 1415
BceAI	ACGGC	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	952
BcuI	ACTAGT	1 cut(s)	734
BfmI	CTRYAG	2 cut(s)	36, 57
BglI	GCCNNNNNGGC	1 cut(s)	1195
BglII	AGATCT	1 cut(s)	1448
Bme1390I	CCNGG	1 cut(s)	952
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	4 cut(s)	92, 330, 353, 985
BmrFI	CCNGG	1 cut(s)	952
BmrI	ACTGGG	1 cut(s)	934
BmsI	GCATC	1 cut(s)	1312
BmuI	ACTGGG	1 cut(s)	934
BpiI	GAAGAC	3 cut(s)	12, 434, 1473
BpmI	CTGGAG	2 cut(s)	1107, 1314
Bpu10I	CCTNAGC	1 cut(s)	1053
BpuEI	CTTGAG	2 cut(s)	402, 844
BpuMI	CCSGG	1 cut(s)	952
BsaJI	CCNNGG	3 cut(s)	950, 1047, 1222
BsaXI	ACNNNNNCTCC	2 cut(s)	868, 898
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 431, 1421
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	2 cut(s)	929, 1124
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	294, 482
BseDI	CCNNGG	3 cut(s)	950, 1047, 1222
BseGI	GGATG	3 cut(s)	10, 970, 1537
BseLI	CCNNNNNNNGG	3 cut(s)	116, 431, 1421
BseMI	GCAATG	2 cut(s)	294, 482
BseMII	CTCAG	4 cut(s)	288, 479, 1338, 1359
BseNI	ACTGG	2 cut(s)	929, 1124
BseRI	GAGGAG	4 cut(s)	826, 1311, 1502, 1532
BseSI	GKGCMC	2 cut(s)	95, 1414
BseYI	CCCAGC	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	956
BshFI	GGCC	4 cut(s)	436, 1151, 1169, 1198
BshNI	GGYRCC	2 cut(s)	90, 983
BsiEI	CGRYCG	1 cut(s)	956
BsiHKAI	GWGCWC	1 cut(s)	1414
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	570, 952
BslI	CCNNNNNNNGG	3 cut(s)	116, 431, 1421
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	4 cut(s)	436, 1151, 1169, 1198
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	3 cut(s)	95, 1072, 1414
Bsp143I	GATC	3 cut(s)	709, 1310, 1448
BspACI	CCGC	7 cut(s)	248, 332, 473, 819, 887, 1058, 1505
BspANI	GGCC	4 cut(s)	436, 1151, 1169, 1198
BspCNI	CTCAG	4 cut(s)	289, 478, 1339, 1360
BspLI	GGNNCC	4 cut(s)	92, 330, 353, 985
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	2 cut(s)	717, 1305
BspT107I	GGYRCC	2 cut(s)	90, 983
BsrDI	GCAATG	2 cut(s)	294, 482
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	929, 1124
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	3 cut(s)	950, 1047, 1222
BssMI	GATC	3 cut(s)	709, 1310, 1448
BssT1I	CCWWGG	2 cut(s)	1047, 1222
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	4 cut(s)	1233, 1425, 1518, 1560
BstC8I	GCNNGC	3 cut(s)	494, 819, 982
BstDEI	CTNAG	8 cut(s)	297, 465, 601, 942, 1053, 1191, 1347, 1368
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	3 cut(s)	10, 970, 1537
BstHHI	GCGC	1 cut(s)	1495
BstKTI	GATC	3 cut(s)	712, 1313, 1451
BstMBI	GATC	3 cut(s)	709, 1310, 1448
BstMCI	CGRYCG	1 cut(s)	956
BstMWI	GCNNNNNNNGC	9 cut(s)	106, 661, 682, 1049, 1118, 1195, 1331, 1352, 1511
BstSCI	CCNGG	1 cut(s)	950
BstSFI	CTRYAG	2 cut(s)	36, 57
BstSLI	GKGCMC	2 cut(s)	95, 1414
BstV2I	GAAGAC	3 cut(s)	12, 434, 1473
BstX2I	RGATCY	2 cut(s)	1310, 1448
BstYI	RGATCY	2 cut(s)	1310, 1448
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	4 cut(s)	436, 1151, 1169, 1198
BtsCI	GGATG	3 cut(s)	10, 970, 1537
BtsI	GCAGTG	2 cut(s)	45, 127
BtsIMutI	CAGTG	4 cut(s)	45, 127, 545, 765
Cac8I	GCNNGC	3 cut(s)	494, 819, 982
CfoI	GCGC	1 cut(s)	1495
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	2 cut(s)	983, 1028
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	3 cut(s)	431, 507, 1460
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	8 cut(s)	297, 465, 601, 942, 1053, 1191, 1347, 1368
DpnI	GATC	3 cut(s)	711, 1312, 1450
DpnII	GATC	3 cut(s)	709, 1310, 1448
DraI	TTTAAA	2 cut(s)	610, 721
DraIII	CACNNNGTG	1 cut(s)	1205
Eam1104I	CTCTTC	4 cut(s)	1233, 1425, 1518, 1560
EarI	CTCTTC	4 cut(s)	1233, 1425, 1518, 1560
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	1047, 1222
Eco24I	GRGCYC	1 cut(s)	1072
Eco32I	GATATC	1 cut(s)	742
Eco57I	CTGAAG	2 cut(s)	789, 1473
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	586
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	460
EcoRV	GATATC	1 cut(s)	742
EcoT14I	CCWWGG	2 cut(s)	1047, 1222
EcoT22I	ATGCAT	1 cut(s)	666
EcoT38I	GRGCYC	1 cut(s)	1072
ErhI	CCWWGG	2 cut(s)	1047, 1222
FaeI	CATG	3 cut(s)	434, 510, 1463
FatI	CATG	3 cut(s)	430, 506, 1459
FauI	CCCGC	3 cut(s)	480, 826, 1051
FauNDI	CATATG	1 cut(s)	1339
FokI	GGATG	3 cut(s)	17, 977, 1544
FriOI	GRGCYC	1 cut(s)	1072
GlaI	GCGC	1 cut(s)	1494
GsaI	CCCAGC	1 cut(s)	15
GsuI	CTGGAG	2 cut(s)	1107, 1314
HaeIII	GGCC	4 cut(s)	436, 1151, 1169, 1198
HapII	CCGG	2 cut(s)	570, 952
HgaI	GACGC	2 cut(s)	983, 1028
HhaI	GCGC	1 cut(s)	1495
Hin1II	CATG	3 cut(s)	434, 510, 1463
Hin6I	GCGC	1 cut(s)	1493
HinP1I	GCGC	1 cut(s)	1493
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	8 cut(s)	17, 26, 382, 779, 857, 1014, 1349, 1433
HpaII	CCGG	2 cut(s)	570, 952
HphI	GGTGA	6 cut(s)	89, 245, 761, 797, 1436, 1571
Hpy166II	GTNNAC	2 cut(s)	253, 1412
Hpy188I	TCNGA	8 cut(s)	25, 356, 468, 501, 1031, 1321, 1438, 1453
Hpy188III	TCNNGA	4 cut(s)	162, 861, 1246, 1446
Hpy8I	GTNNAC	2 cut(s)	253, 1412
Hpy99I	CGWCG	1 cut(s)	1022
HpyAV	CCTTC	4 cut(s)	186, 700, 1159, 1538
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	5 cut(s)	38, 664, 1355, 1412, 1459
HpyF10VI	GCNNNNNNNGC	9 cut(s)	106, 661, 682, 1049, 1118, 1195, 1331, 1352, 1511
HpyF3I	CTNAG	8 cut(s)	297, 465, 601, 942, 1053, 1191, 1347, 1368
Hsp92II	CATG	3 cut(s)	434, 510, 1463
HspAI	GCGC	1 cut(s)	1493
Kzo9I	GATC	3 cut(s)	709, 1310, 1448
LmnI	GCTCC	5 cut(s)	357, 839, 1061, 1126, 1339
LweI	GCATC	1 cut(s)	1312
MaeIII	GTNAC	4 cut(s)	623, 749, 854, 920
MalI	GATC	3 cut(s)	711, 1312, 1450
MboI	GATC	3 cut(s)	709, 1310, 1448
MflI	RGATCY	2 cut(s)	1310, 1448
MhlI	GDGCHC	3 cut(s)	95, 1072, 1414
MluCI	AATT	3 cut(s)	460, 801, 826
MlyI	GAGTC	4 cut(s)	26, 851, 1358, 1442
MmeI	TCCRAC	2 cut(s)	988, 1264
Mph1103I	ATGCAT	1 cut(s)	666
MroXI	GAANNNNTTC	1 cut(s)	933
MseI	TTAA	5 cut(s)	195, 405, 609, 720, 825
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	3 cut(s)	685, 1280, 1384
MspI	CCGG	2 cut(s)	570, 952
MspR9I	CCNGG	1 cut(s)	952
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	9 cut(s)	106, 661, 682, 1049, 1118, 1195, 1331, 1352, 1511
NciI	CCSGG	1 cut(s)	952
NdeI	CATATG	1 cut(s)	1339
NdeII	GATC	3 cut(s)	709, 1310, 1448
NlaIII	CATG	3 cut(s)	434, 510, 1463
NlaIV	GGNNCC	4 cut(s)	92, 330, 353, 985
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	749, 854
NsiI	ATGCAT	1 cut(s)	666
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	4 cut(s)	26, 382, 779, 1014
PflMI	CCANNNNNTGG	1 cut(s)	431
PleI	GAGTC	4 cut(s)	25, 851, 1357, 1441
PpsI	GAGTC	4 cut(s)	25, 851, 1357, 1441
PsiI	TTATAA	1 cut(s)	669
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	4 cut(s)	92, 330, 353, 985
PspPI	GGNCC	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	1310, 1448
PvuII	CAGCTG	3 cut(s)	685, 1280, 1384
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	5 cut(s)	195, 405, 609, 720, 825
Sau3AI	GATC	3 cut(s)	709, 1310, 1448
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	4 cut(s)	26, 851, 1358, 1442
ScrFI	CCNGG	1 cut(s)	952
SduI	GDGCHC	3 cut(s)	95, 1072, 1414
SfaNI	GCATC	1 cut(s)	1312
SfcI	CTRYAG	2 cut(s)	36, 57
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	417, 859
SmoI	CTYRAG	2 cut(s)	417, 859
SpeI	ACTAGT	1 cut(s)	734
Sse9I	AATT	3 cut(s)	460, 801, 826
SsiI	CCGC	7 cut(s)	248, 332, 473, 819, 887, 1058, 1505
StyD4I	CCNGG	1 cut(s)	950
StyI	CCWWGG	2 cut(s)	1047, 1222
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	3 cut(s)	128, 1017, 1083
TasI	AATT	3 cut(s)	460, 801, 826
TfiI	GAWTC	4 cut(s)	26, 382, 779, 1014
Tru1I	TTAA	5 cut(s)	195, 405, 609, 720, 825
Tru9I	TTAA	5 cut(s)	195, 405, 609, 720, 825
TscAI	CASTG	4 cut(s)	45, 127, 545, 772
TseFI	GTSAC	2 cut(s)	749, 854
Tsp45I	GTSAC	2 cut(s)	749, 854
TspDTI	ATGAA	5 cut(s)	1356, 1389, 1443, 1479, 1557
TspRI	CASTG	4 cut(s)	45, 127, 545, 772
Van91I	CCANNNNNTGG	1 cut(s)	431
VneI	GTGCAC	1 cut(s)	1410
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	933
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.