Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010090

Physical Location & Seq

Genomic Coordinates Forward (+)

5450620 .. 5454577

Gene Structure 3958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGAGAACCTTACCCTAGTTTCTTGCTCAGCTTCTTCTCCAAAGCTGTTAATTGGATGCAATTTCACTTCCTCGCTGAAAAACCCTACTGGGTTTTCTCGTCGGACTCCTAATATTGTCCTCCGGTGTTCCAAAATATCTGCCTCTGCTCAATCTCAATCTCCCTCTTCGCGTCCGGAGAACACTGGAGAAATCGTGGTTGTGAAACAGAGAAGCAAAGCTTTTGCAAGTATATTTTCTTCGAGTCGTGATCAACAGACAACTTCTGTTGCTTCCCCTAGTGTGCCTGTGCCACCACCATCTTCATCAACCATAGGATCACCACTTTTCTGGATTGGTGTTGGTGTTGGTCTATCAGCTTTGTTCTCATATGTAACTTCAAATTTAAAGAAATATGCAATGCAAACAGCTATGAAGACGATGATGAACCAAATGAATACGCAAAATAGCCAGTTTAATAATTCTGGATTCCCATCAGGATCACCTTTTCCGTTTCCATTTCCTCCTCAAACAAGTCCTGCTTCCTCGCCATTCCAATCTCAATCCCAGTCTTCAGGTGCTACCGTTGATGTGACAGCGACAAAAGTAGAGACACCTCCTTCAACTAAACCGAAACCTACACCTGCAAAGGATATAGAGGTGGATAAGCCAAGTGTTGTCTTAGAGGCAAGCAAAGAGAAGAAAGAAGAAAAGAACTATGCCTTTGAAGACATTTCACCCGAGGAAACCACAAAAGAAAGCCCATTTAGCAACTATGCAGAAGTCTCTGAAACTAATTCCCCCAAAGAAACTCGCTTGTTTGAGGATGTCTTGCAAAATGGAGCTGGTCCGGCAAATGGTGCCACTGCTTCAGAGGTTTTTCAATCTTTGGGTGGTGGGAAAGGAGGGCCGGGTTTATCTGTAGAAGCTTTAGAGAAAATGATGGAAGATCCAACAGTCCAGAAGATGGTTTACCCATACTTGCCTGAGGAGATGAGGAACCCAGAAACTTTCAAATGGATGCTTAAAAATCCTCAGTACCGTCAACAACTACAGGACATGTTGAATAATATGAGTGGGAGTGGTGAATGGGACAAGCGAATGACAGATACATTGAAGAATTTTGACCTGAATAGTCCTGAAGTGAAGCAACAATTCAATCAAATAGGACTAACTCCAGAAGAAGTCATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAATGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAGGTAATGGATGTGTTCAACAAGATATCGCAGCTCTTCCCAGGAATGACGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

447

Amino Acids

48.9

Weight (kDa)

5.38

Isoelectric Point (pI)

62.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN13_C	PF16550	299 - 375	3.2e-06	UCH-binding domain
STI1-HOP_DP	PF17830	387 - 438	3.7e-11	STI1/HOP, DP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16620
fragaria_vesca	FvH4_2g09382 FvH4_7g07530 FvH4_7g07530 FvH4_7g07530
malus_domestica	MD02G1235900.v1.1 MD07G1079600.v1.1
prunus_persica	Prupe.2G102700_v2.0.a1
pyrus_communis	pycom02g20260 pycom02g20320 pycom07g06340
rosa_chinensis	RchiOBHm_Chr1g0339281
rosa_laevigata	RLG00000029223
rosa_multiflora	Rmu_sc0001248.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313410
rosa_rugosa	Rorug01G0143200.1 Rorug01G0143300.1
rosa_samantha	Rh1AG160100 Rh1BG126900 Rh1CG149400
rosa_wichuraiana	Rw1G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	839
AccB7I	CCANNNNNTGG	1 cut(s)	946
AccII	CGCG	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	175
AclWI	GGATC	3 cut(s)	325, 487, 923
AcsI	RAATTY	2 cut(s)	382, 1099
AcuI	CTGAAG	3 cut(s)	537, 834, 1140
AfaI	GTAC	2 cut(s)	1019, 1274
AfiI	CCNNNNNNNGG	2 cut(s)	836, 946
AflIII	ACRYGT	1 cut(s)	1038
AgsI	TTSAA	9 cut(s)	381, 603, 707, 863, 994, 1045, 1096, 1138, 1306
AjnI	CCWGG	1 cut(s)	1327
AluBI	AGCT	8 cut(s)	32, 46, 221, 359, 410, 824, 908, 1321
AluI	AGCT	8 cut(s)	32, 46, 221, 359, 410, 824, 908, 1321
Alw26I	GTCTC	2 cut(s)	584, 769
AlwI	GGATC	3 cut(s)	325, 487, 923
Ama87I	CYCGRG	1 cut(s)	719
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	1 cut(s)	887
ApeKI	GCWGC	2 cut(s)	1229, 1318
ApoI	RAATTY	2 cut(s)	382, 1099
AspS9I	GGNCC	2 cut(s)	827, 887
AsuC2I	CCSGG	1 cut(s)	891
AsuHPI	GGTGA	4 cut(s)	312, 474, 708, 1076
AvaI	CYCGRG	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	827
AxyI	CCTNAGG	1 cut(s)	966
BanI	GGYRCC	1 cut(s)	839
BarI	GAAGNNNNNNTAC	4 cut(s)	223, 255, 935, 967
BbsI	GAAGAC	3 cut(s)	422, 543, 714
BbvI	GCAGC	2 cut(s)	1241, 1330
BccI	CCATC	4 cut(s)	307, 481, 916, 940
BciT130I	CCWGG	1 cut(s)	1329
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	891
BcoDI	GTCTC	2 cut(s)	584, 769
BfaI	CTAG	3 cut(s)	17, 279, 1218
BfmI	CTRYAG	2 cut(s)	900, 1031
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	2 cut(s)	1230, 1319
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	2 cut(s)	1231, 1320
Bme1390I	CCNGG	2 cut(s)	891, 1329
Bme18I	GGWCC	1 cut(s)	827
BmeT110I	CYCGRG	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	827, 887
BmiI	GGNNCC	2 cut(s)	841, 980
BmrFI	CCNGG	2 cut(s)	891, 1329
BmrI	ACTGGG	2 cut(s)	99, 541
BmsI	GCATC	2 cut(s)	47, 990
BmuI	ACTGGG	2 cut(s)	99, 541
BpiI	GAAGAC	3 cut(s)	422, 543, 714
BpmI	CTGGAG	2 cut(s)	207, 1140
Bpu1102I	GCTNAGC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	472
BsaJI	CCNNGG	3 cut(s)	720, 1200, 1327
BsaWI	WCCGGW	2 cut(s)	123, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	836, 946
Bse1I	ACTGG	4 cut(s)	94, 190, 451, 547
Bse21I	CCTNAGG	1 cut(s)	966
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	472
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	1329
BseDI	CCNNGG	3 cut(s)	720, 1200, 1327
BseGI	GGATG	4 cut(s)	62, 811, 1005, 1303
BseJI	GATNNNNATC	1 cut(s)	472
BseLI	CCNNNNNNNGG	2 cut(s)	836, 946
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	4 cut(s)	42, 957, 1028, 1260
BseNI	ACTGG	4 cut(s)	94, 190, 451, 547
BseRI	GAGGAG	2 cut(s)	495, 983
BseXI	GCAGC	2 cut(s)	1241, 1330
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	889
BshNI	GGYRCC	1 cut(s)	839
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	4 cut(s)	124, 176, 830, 890
BslFI	GGGAC	1 cut(s)	1085
BslI	CCNNNNNNNGG	2 cut(s)	836, 946
BsmAI	GTCTC	2 cut(s)	584, 769
BsmFI	GGGAC	1 cut(s)	1085
BsmI	GAATGC	2 cut(s)	1205, 1247
BsnI	GGCC	1 cut(s)	889
BsoBI	CYCGRG	1 cut(s)	719
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	5 cut(s)	250, 317, 479, 928, 1176
Bsp1720I	GCTNAGC	1 cut(s)	28
Bsp19I	CCATGG	1 cut(s)	1200
BspANI	GGCC	1 cut(s)	889
BspCNI	CTCAG	4 cut(s)	41, 958, 1027, 1259
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	172
BspHI	TCATGA	1 cut(s)	1266
BspLI	GGNNCC	2 cut(s)	841, 980
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	3 cut(s)	325, 487, 923
BspQI	GCTCTTC	1 cut(s)	1328
BspT107I	GGYRCC	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	405
BsrI	ACTGG	4 cut(s)	94, 190, 451, 547
BssECI	CCNNGG	3 cut(s)	720, 1200, 1327
BssMI	GATC	5 cut(s)	250, 317, 479, 928, 1176
BssT1I	CCWWGG	1 cut(s)	1200
Bst2UI	CCWGG	1 cut(s)	1329
Bst4CI	ACNGT	3 cut(s)	565, 937, 1022
Bst6I	CTCTTC	2 cut(s)	172, 1328
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	6 cut(s)	28, 661, 966, 1014, 1173, 1246
BstDSI	CCRYGG	1 cut(s)	1200
BstF5I	GGATG	4 cut(s)	62, 811, 1005, 1303
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	5 cut(s)	253, 320, 482, 931, 1179
BstMAI	GTCTC	2 cut(s)	584, 769
BstMBI	GATC	5 cut(s)	250, 317, 479, 928, 1176
BstMWI	GCNNNNNNNGC	3 cut(s)	747, 830, 839
BstNI	CCWGG	1 cut(s)	1329
BstNSI	RCATGY	1 cut(s)	1042
BstSCI	CCNGG	2 cut(s)	889, 1327
BstSFI	CTRYAG	2 cut(s)	900, 1031
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	1241, 1330
BstV2I	GAAGAC	3 cut(s)	422, 543, 714
BstX2I	RGATCY	1 cut(s)	928
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	928
Bsu36I	CCTNAGG	1 cut(s)	966
BsuRI	GGCC	1 cut(s)	889
BtgI	CCRYGG	1 cut(s)	1200
BtsCI	GGATG	4 cut(s)	62, 811, 1005, 1303
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	2 cut(s)	183, 843
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	1 cut(s)	670
CciI	TCATGA	1 cut(s)	1266
Cfr13I	GGNCC	2 cut(s)	827, 887
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	1018, 1273
CviAII	CATG	4 cut(s)	1039, 1180, 1201, 1267
CviQI	GTAC	2 cut(s)	1018, 1273
DdeI	CTNAG	6 cut(s)	28, 661, 966, 1014, 1173, 1246
DpnI	GATC	5 cut(s)	252, 319, 481, 930, 1178
DpnII	GATC	5 cut(s)	250, 317, 479, 928, 1176
DraI	TTTAAA	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	172, 1328
EarI	CTCTTC	2 cut(s)	172, 1328
Eco130I	CCWWGG	1 cut(s)	1200
Eco32I	GATATC	1 cut(s)	1314
Eco47I	GGWCC	1 cut(s)	827
Eco57I	CTGAAG	3 cut(s)	537, 834, 1140
Eco81I	CCTNAGG	1 cut(s)	966
Eco88I	CYCGRG	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	1327
EcoRV	GATATC	1 cut(s)	1314
EcoT14I	CCWWGG	1 cut(s)	1200
ErhI	CCWWGG	1 cut(s)	1200
FaeI	CATG	4 cut(s)	1042, 1183, 1204, 1270
FalI	AAGNNNNNCTT	4 cut(s)	205, 237, 505, 537
FaqI	GGGAC	1 cut(s)	1085
FatI	CATG	4 cut(s)	1038, 1179, 1200, 1266
FauNDI	CATATG	1 cut(s)	370
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	1230, 1319
FokI	GGATG	4 cut(s)	69, 818, 1012, 1310
Fsp4HI	GCNGC	2 cut(s)	1230, 1319
FspBI	CTAG	3 cut(s)	17, 279, 1218
GluI	GCNGC	2 cut(s)	1230, 1319
GsuI	CTGGAG	2 cut(s)	207, 1140
HaeIII	GGCC	1 cut(s)	889
HapII	CCGG	4 cut(s)	124, 176, 830, 890
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	4 cut(s)	1042, 1183, 1204, 1270
HincII	GTYRAC	1 cut(s)	1025
HindII	GTYRAC	1 cut(s)	1025
HindIII	AAGCTT	2 cut(s)	219, 906
HinfI	GANTC	5 cut(s)	106, 244, 468, 1213, 1221
HpaII	CCGG	4 cut(s)	124, 176, 830, 890
HphI	GGTGA	4 cut(s)	312, 474, 708, 1076
Hpy166II	GTNNAC	2 cut(s)	952, 1025
Hpy188I	TCNGA	4 cut(s)	105, 769, 853, 1249
Hpy8I	GTNNAC	2 cut(s)	952, 1025
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	609
HpyCH4III	ACNGT	3 cut(s)	565, 937, 1022
HpyCH4V	TGCA	7 cut(s)	60, 227, 398, 403, 626, 758, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	747, 830, 839
HpyF3I	CTNAG	6 cut(s)	28, 661, 966, 1014, 1173, 1246
Hsp92II	CATG	4 cut(s)	1042, 1183, 1204, 1270
Kpn2I	TCCGGA	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	250, 317, 479, 928, 1176
LguI	GCTCTTC	1 cut(s)	1328
LmnI	GCTCC	1 cut(s)	821
Lsp1109I	GCAGC	2 cut(s)	1241, 1330
LweI	GCATC	2 cut(s)	47, 990
MaeI	CTAG	3 cut(s)	17, 279, 1218
MaeIII	GTNAC	2 cut(s)	373, 571
MalI	GATC	5 cut(s)	252, 319, 481, 930, 1178
MboI	GATC	5 cut(s)	250, 317, 479, 928, 1176
MflI	RGATCY	1 cut(s)	928
MluCI	AATT	7 cut(s)	51, 61, 382, 460, 775, 1099, 1133
MlyI	GAGTC	3 cut(s)	100, 253, 1230
MmeI	TCCRAC	2 cut(s)	83, 956
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	5 cut(s)	50, 386, 456, 1005, 1235
MspI	CCGG	4 cut(s)	124, 176, 830, 890
MspR9I	CCNGG	2 cut(s)	891, 1329
Mva1269I	GAATGC	2 cut(s)	1205, 1247
MvaI	CCWGG	1 cut(s)	1329
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	747, 830, 839
NciI	CCSGG	1 cut(s)	891
NcoI	CCATGG	1 cut(s)	1200
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	5 cut(s)	250, 317, 479, 928, 1176
NlaIII	CATG	4 cut(s)	1042, 1183, 1204, 1270
NlaIV	GGNNCC	2 cut(s)	841, 980
NmuCI	GTSAC	1 cut(s)	571
NspI	RCATGY	1 cut(s)	1042
PagI	TCATGA	1 cut(s)	1266
PaqCI	CACCTGC	1 cut(s)	631
PciI	ACATGT	1 cut(s)	1038
PciSI	GCTCTTC	1 cut(s)	1328
PctI	GAATGC	2 cut(s)	1205, 1247
PfeI	GAWTC	2 cut(s)	468, 1213
PflMI	CCANNNNNTGG	1 cut(s)	946
PkrI	GCNGC	2 cut(s)	1231, 1320
PleI	GAGTC	3 cut(s)	100, 252, 1229
PpsI	GAGTC	3 cut(s)	100, 252, 1229
PscI	ACATGT	1 cut(s)	1038
Psp6I	CCWGG	1 cut(s)	1327
PspGI	CCWGG	1 cut(s)	1327
PspN4I	GGNNCC	2 cut(s)	841, 980
PspPI	GGNCC	2 cut(s)	827, 887
PsuI	RGATCY	1 cut(s)	928
RsaI	GTAC	2 cut(s)	1019, 1274
RsaNI	GTAC	2 cut(s)	1018, 1273
SapI	GCTCTTC	1 cut(s)	1328
SaqAI	TTAA	5 cut(s)	50, 386, 456, 1005, 1235
SatI	GCNGC	2 cut(s)	1230, 1319
Sau3AI	GATC	5 cut(s)	250, 317, 479, 928, 1176
Sau96I	GGNCC	2 cut(s)	827, 887
SchI	GAGTC	3 cut(s)	100, 253, 1230
ScrFI	CCNGG	2 cut(s)	891, 1329
SfaNI	GCATC	2 cut(s)	47, 990
SfcI	CTRYAG	2 cut(s)	900, 1031
SinI	GGWCC	1 cut(s)	827
Sse9I	AATT	7 cut(s)	51, 61, 382, 460, 775, 1099, 1133
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	3 cut(s)	17, 279, 1218
StyD4I	CCNGG	2 cut(s)	889, 1327
StyI	CCWWGG	1 cut(s)	1200
TaaI	ACNGT	3 cut(s)	565, 937, 1022
TaqI	TCGA	1 cut(s)	242
TasI	AATT	7 cut(s)	51, 61, 382, 460, 775, 1099, 1133
TfiI	GAWTC	2 cut(s)	468, 1213
Tru1I	TTAA	5 cut(s)	50, 386, 456, 1005, 1235
Tru9I	TTAA	5 cut(s)	50, 386, 456, 1005, 1235
TscAI	CASTG	2 cut(s)	190, 850
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	1229, 1318
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	6 cut(s)	294, 428, 440, 449, 1274, 1283
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	2 cut(s)	190, 850
Van91I	CCANNNNNTGG	1 cut(s)	946
VpaK11BI	GGWCC	1 cut(s)	827
XapI	RAATTY	2 cut(s)	382, 1099
XceI	RCATGY	1 cut(s)	1042
XspI	CTAG	3 cut(s)	17, 279, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.