Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010090

Physical Location & Seq

Genomic Coordinates Forward (+)

7409140 .. 7417494

Gene Structure 8355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07530.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGATGTCACTCTCTCTCCCTCACTCTCTTCCTCGCTGTCCTCCACCGCCAAGAATCGCACCCTCGTATCATCGCTTCACTGTTCTCCGATGCTCCTCCGCGAACCTCAGGGCCTCTCTCAGTTCCCCAAATTCCAGACTGACCGTTCGACTCTCTGCTGCCGCTAATCAACCAGTTACATCAAAGTTACAAACGGAACGGTTTGCAAGCATTTCTTCCACAAACAGTCAAGAAACATCTTCTGTTGGTATCAACCCACAATTCTCAGCACCTCCCCCACCGTCCACTATAGGATCACCTCTATTTTGGATTGGTGTTGGTGTTGCGTTTTCTGCGGTATTTTCATGGGCGGCTGGAAAGTTACAGAAATATGTAGTGCAACAAGCTTTCAAGAATGTGATGGGCCAGATGAATACACAAAATGACCAGTTTAGCAATGCTGCATTTTCTCCGGGTTCCCCCTTTCCATTTCCATCAGCTCCAGCATCGCCTTCTGCCTCTCCTTTTTCAGCACCCTCTCAACCATCTTTCACAGATGTATCTGCAACAGAAGTAGATTCACCAGCCTCATCAGCCACTCCTTCGACACCTGCTGCTGATGTCAAAAGTGAAGAACAACAAATGAAAGAAAACAGATTTGCTTTCGTAGATGTTAATCCAGAAGAAACTGAGCTAAAGAGTCCTTTTGCAAGTAGCTTAAATGATACTGAACCAGGTTCGTCCAAGGAAATCAACAGTAATGTGGAAGGTTCTCAAAATGGAGCTGCTTTTAAGCAAGCGAAAGATGCTTCGATGGGGTCTCAAACTACAGGAAAAGAAAATTCTGTTTTGTCAGTGGAAGCATTGGAGAAAATGTTGGAAGATCCGACTGTACAGAAGATGGTTTATCCCTATTTACCTGAGGAGATGAGGAATCCCACTACGTTCAAATGGATGCTGCAAAATCCACAATATCGCCAACAGCTAGAAGACATGTTACGTAATATGACTGGAAGCAATGAATGGGACAATCGAATGATGGATTCTTTAAAAAACTTTGACCTTAGCAGTCCAGAGGTCAAGGAGCAGTTCGATCAGATTGGGCTTACACCTGAACAAGTTATTTCAAAGATAATGGCGAATCCTGATGTTGCTATGGCGTTTCAAAATCCAAGAGTTCAAGCTGCCATAATGGATTGTTCACAGAATCCAATGAGTATTACAAAATATCAAAATGATAAGGAGGTGATGGATGTCTTCAATAAGATATCGGAGCTTTTCCCCGGGGTGTCTGGCTCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

46.56

Weight (kDa)

5.08

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN13_C	PF16550	280 - 357	1.2e-06	UCH-binding domain
STI1-HOP_DP	PF17830	371 - 422	3.5e-11	STI1/HOP, DP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16620
fragaria_vesca	FvH4_2g09382 FvH4_7g07530 FvH4_7g07530 FvH4_7g07530
malus_domestica	MD02G1235900.v1.1 MD07G1079600.v1.1
prunus_persica	Prupe.2G102700_v2.0.a1
pyrus_communis	pycom02g20260 pycom02g20320 pycom07g06340
rosa_chinensis	RchiOBHm_Chr1g0339281
rosa_laevigata	RLG00000029223
rosa_multiflora	Rmu_sc0001248.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313410
rosa_rugosa	Rorug01G0143200.1 Rorug01G0143300.1
rosa_samantha	Rh1AG160100 Rh1BG126900 Rh1CG149400
rosa_wichuraiana	Rw1G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	598
Acc36I	ACCTGC	1 cut(s)	598
AccII	CGCG	1 cut(s)	101
AciI	CCGC	5 cut(s)	47, 99, 162, 335, 350
AclWI	GGATC	2 cut(s)	301, 857
AcsI	RAATTY	2 cut(s)	130, 820
AfaI	GTAC	1 cut(s)	873
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	6 cut(s)	391, 928, 1107, 1145, 1160, 1240
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	8 cut(s)	386, 479, 673, 696, 764, 964, 1163, 1255
AluI	AGCT	8 cut(s)	386, 479, 673, 696, 764, 964, 1163, 1255
Alw26I	GTCTC	1 cut(s)	804
AlwI	GGATC	2 cut(s)	301, 857
Ama87I	CYCGRG	1 cut(s)	1262
AoxI	GGCC	2 cut(s)	111, 403
ApeKI	GCWGC	6 cut(s)	158, 440, 593, 764, 937, 1163
ApoI	RAATTY	2 cut(s)	130, 820
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspS9I	GGNCC	2 cut(s)	111, 403
AsuC2I	CCSGG	3 cut(s)	453, 1263, 1264
AsuHPI	GGTGA	4 cut(s)	288, 552, 1237, 1269
AvaI	CYCGRG	1 cut(s)	1262
AxyI	CCTNAGG	2 cut(s)	107, 900
BaeI	ACNNNNGTAYC	4 cut(s)	50, 83, 522, 555
BarI	GAAGNNNNNNTAC	4 cut(s)	59, 91, 960, 992
BbsI	GAAGAC	2 cut(s)	975, 1228
BbvI	GCAGC	6 cut(s)	145, 427, 580, 751, 924, 1150
BccI	CCATC	7 cut(s)	394, 481, 532, 787, 874, 1012, 1222
BciT130I	CCWGG	1 cut(s)	714
BcnI	CCSGG	3 cut(s)	453, 1263, 1264
BcoDI	GTCTC	1 cut(s)	804
BfaI	CTAG	1 cut(s)	965
BfmI	CTRYAG	2 cut(s)	288, 807
BfuAI	ACCTGC	1 cut(s)	598
BisI	GCNGC	8 cut(s)	159, 162, 351, 441, 594, 765, 938, 1164
BlsI	GCNGC	8 cut(s)	160, 163, 352, 442, 595, 766, 939, 1165
Bme1390I	CCNGG	4 cut(s)	453, 714, 1263, 1264
BmeT110I	CYCGRG	1 cut(s)	1262
BmgT120I	GGNCC	2 cut(s)	111, 403
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	4 cut(s)	453, 714, 1263, 1264
BmsI	GCATC	4 cut(s)	80, 494, 775, 924
BpiI	GAAGAC	2 cut(s)	975, 1228
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	1043
BpuMI	CCSGG	3 cut(s)	453, 1263, 1264
BsaAI	YACGTR	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	804
BsaJI	CCNNGG	4 cut(s)	723, 1261, 1262, 1263
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 839, 869
Bse1I	ACTGG	3 cut(s)	173, 427, 994
Bse21I	CCTNAGG	2 cut(s)	107, 900
Bse3DI	GCAATG	2 cut(s)	442, 1003
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	4 cut(s)	723, 1261, 1262, 1263
BseGI	GGATG	2 cut(s)	939, 1237
BseJI	GATNNNNATC	1 cut(s)	654
BseMI	GCAATG	2 cut(s)	442, 1003
BseMII	CTCAG	5 cut(s)	121, 133, 279, 660, 891
BseNI	ACTGG	3 cut(s)	173, 427, 994
BseRI	GAGGAG	2 cut(s)	85, 917
BseXI	GCAGC	6 cut(s)	145, 427, 580, 751, 924, 1150
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	113, 405
BsiHKCI	CYCGRG	1 cut(s)	1262
BsiSI	CCGG	2 cut(s)	452, 1263
BslFI	GGGAC	1 cut(s)	1019
BsmAI	GTCTC	1 cut(s)	804
BsmFI	GGGAC	1 cut(s)	1019
BsnI	GGCC	2 cut(s)	113, 405
Bso31I	GGTCTC	1 cut(s)	804
BsoBI	CYCGRG	1 cut(s)	1262
Bsp1407I	TGTACA	1 cut(s)	871
Bsp143I	GATC	3 cut(s)	293, 862, 1072
BspACI	CCGC	5 cut(s)	47, 99, 162, 335, 350
BspANI	GGCC	2 cut(s)	113, 405
BspCNI	CTCAG	5 cut(s)	120, 132, 278, 661, 892
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	2 cut(s)	301, 857
BspTNI	GGTCTC	1 cut(s)	804
BsrDI	GCAATG	2 cut(s)	442, 1003
BsrGI	TGTACA	1 cut(s)	871
BsrI	ACTGG	3 cut(s)	173, 427, 994
BssECI	CCNNGG	4 cut(s)	723, 1261, 1262, 1263
BssMI	GATC	3 cut(s)	293, 862, 1072
BssT1I	CCWWGG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	714
Bst4CI	ACNGT	7 cut(s)	82, 145, 201, 227, 282, 737, 871
Bst6I	CTCTTC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	871
BstBAI	YACGTR	1 cut(s)	980
BstC8I	GCNNGC	2 cut(s)	208, 777
BstDEI	CTNAG	6 cut(s)	107, 119, 265, 669, 900, 1043
BstF5I	GGATG	2 cut(s)	939, 1237
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	296, 865, 1075
BstMAI	GTCTC	1 cut(s)	804
BstMBI	GATC	3 cut(s)	293, 862, 1072
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 572, 785
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	1 cut(s)	976
BstSCI	CCNGG	4 cut(s)	451, 712, 1261, 1262
BstSFI	CTRYAG	2 cut(s)	288, 807
BstSNI	TACGTA	1 cut(s)	980
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	6 cut(s)	145, 427, 580, 751, 924, 1150
BstV2I	GAAGAC	2 cut(s)	975, 1228
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
Bsu36I	CCTNAGG	2 cut(s)	107, 900
BsuRI	GGCC	2 cut(s)	113, 405
BtgZI	GCGATG	2 cut(s)	56, 471
BtsCI	GGATG	2 cut(s)	939, 1237
BtsIMutI	CAGTG	2 cut(s)	78, 840
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	208, 777
Cfr13I	GGNCC	2 cut(s)	111, 403
Cfr9I	CCCGGG	1 cut(s)	1262
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	872
CviAII	CATG	2 cut(s)	345, 973
CviQI	GTAC	1 cut(s)	872
DdeI	CTNAG	6 cut(s)	107, 119, 265, 669, 900, 1043
DpnI	GATC	3 cut(s)	295, 864, 1074
DpnII	GATC	3 cut(s)	293, 862, 1072
DraI	TTTAAA	1 cut(s)	1029
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco105I	TACGTA	1 cut(s)	980
Eco130I	CCWWGG	1 cut(s)	723
Eco31I	GGTCTC	1 cut(s)	804
Eco32I	GATATC	1 cut(s)	1248
Eco81I	CCTNAGG	2 cut(s)	107, 900
Eco88I	CYCGRG	1 cut(s)	1262
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	712
EcoRV	GATATC	1 cut(s)	1248
EcoT14I	CCWWGG	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	723
FaeI	CATG	2 cut(s)	348, 976
FaiI	YATR	7 cut(s)	290, 346, 372, 974, 986, 1136, 1169
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FaqI	GGGAC	1 cut(s)	1019
FatI	CATG	2 cut(s)	344, 972
Fnu4HI	GCNGC	8 cut(s)	159, 162, 351, 441, 594, 765, 938, 1164
FokI	GGATG	2 cut(s)	946, 1244
Fsp4HI	GCNGC	8 cut(s)	159, 162, 351, 441, 594, 765, 938, 1164
FspBI	CTAG	1 cut(s)	965
GluI	GCNGC	8 cut(s)	159, 162, 351, 441, 594, 765, 938, 1164
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	113, 405
HapII	CCGG	2 cut(s)	452, 1263
Hin1II	CATG	2 cut(s)	348, 976
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	8 cut(s)	54, 150, 557, 679, 913, 1022, 1120, 1186
HpaII	CCGG	2 cut(s)	452, 1263
HphI	GGTGA	4 cut(s)	288, 552, 1237, 1269
Hpy166II	GTNNAC	2 cut(s)	285, 1181
Hpy188I	TCNGA	4 cut(s)	89, 867, 1077, 1252
Hpy188III	TCNNGA	6 cut(s)	135, 230, 391, 659, 1052, 1124
Hpy8I	GTNNAC	2 cut(s)	285, 1181
HpyAV	CCTTC	3 cut(s)	501, 591, 740
HpyCH4III	ACNGT	7 cut(s)	82, 145, 201, 227, 282, 737, 871
HpyCH4IV	ACGT	2 cut(s)	923, 979
HpyCH4V	TGCA	6 cut(s)	206, 379, 443, 545, 689, 940
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 572, 785
HpyF3I	CTNAG	6 cut(s)	107, 119, 265, 669, 900, 1043
HpySE526I	ACGT	2 cut(s)	923, 979
Hsp92II	CATG	2 cut(s)	348, 976
Kzo9I	GATC	3 cut(s)	293, 862, 1072
LmnI	GCTCC	5 cut(s)	98, 484, 761, 1063, 1252
Lsp1109I	GCAGC	6 cut(s)	145, 427, 580, 751, 924, 1150
LweI	GCATC	4 cut(s)	80, 494, 775, 924
MabI	ACCWGGT	1 cut(s)	712
MaeI	CTAG	1 cut(s)	965
MaeII	ACGT	2 cut(s)	923, 979
MaeIII	GTNAC	5 cut(s)	6, 175, 186, 360, 975
MalI	GATC	3 cut(s)	295, 864, 1074
MboI	GATC	3 cut(s)	293, 862, 1072
MboII	GAAGA	9 cut(s)	20, 207, 231, 623, 674, 872, 889, 980, 1228
MflI	RGATCY	1 cut(s)	862
MluCI	AATT	3 cut(s)	130, 260, 820
MlyI	GAGTC	2 cut(s)	144, 688
MmeI	TCCRAC	2 cut(s)	837, 890
MseI	TTAA	4 cut(s)	654, 698, 771, 1028
MspI	CCGG	2 cut(s)	452, 1263
MspR9I	CCNGG	4 cut(s)	453, 714, 1263, 1264
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	332, 572, 785
NciI	CCSGG	3 cut(s)	453, 1263, 1264
NdeII	GATC	3 cut(s)	293, 862, 1072
NlaIII	CATG	2 cut(s)	348, 976
NlaIV	GGNNCC	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	976
PaqCI	CACCTGC	1 cut(s)	598
PciI	ACATGT	1 cut(s)	972
PfeI	GAWTC	6 cut(s)	54, 557, 913, 1022, 1120, 1186
PkrI	GCNGC	8 cut(s)	160, 163, 352, 442, 595, 766, 939, 1165
PleI	GAGTC	2 cut(s)	144, 687
PpsI	GAGTC	2 cut(s)	144, 687
Ppu21I	YACGTR	1 cut(s)	980
PscI	ACATGT	1 cut(s)	972
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	2 cut(s)	111, 403
PsuI	RGATCY	1 cut(s)	862
RsaI	GTAC	1 cut(s)	873
RsaNI	GTAC	1 cut(s)	872
SaqAI	TTAA	4 cut(s)	654, 698, 771, 1028
SatI	GCNGC	8 cut(s)	159, 162, 351, 441, 594, 765, 938, 1164
Sau3AI	GATC	3 cut(s)	293, 862, 1072
Sau96I	GGNCC	2 cut(s)	111, 403
SchI	GAGTC	2 cut(s)	144, 688
ScrFI	CCNGG	4 cut(s)	453, 714, 1263, 1264
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	4 cut(s)	80, 494, 775, 924
SfcI	CTRYAG	2 cut(s)	288, 807
SmaI	CCCGGG	1 cut(s)	1264
SnaBI	TACGTA	1 cut(s)	980
Sse9I	AATT	3 cut(s)	130, 260, 820
SsiI	CCGC	5 cut(s)	47, 99, 162, 335, 350
SspMI	CTAG	1 cut(s)	965
StyD4I	CCNGG	4 cut(s)	451, 712, 1261, 1262
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	7 cut(s)	82, 145, 201, 227, 282, 737, 871
TaiI	ACGT	2 cut(s)	926, 982
TaqI	TCGA	5 cut(s)	148, 584, 791, 1012, 1071
TasI	AATT	3 cut(s)	130, 260, 820
TatI	WGTACW	1 cut(s)	871
TauI	GCSGC	2 cut(s)	164, 353
TfiI	GAWTC	6 cut(s)	54, 557, 913, 1022, 1120, 1186
Tru1I	TTAA	4 cut(s)	654, 698, 771, 1028
Tru9I	TTAA	4 cut(s)	654, 698, 771, 1028
TscAI	CASTG	2 cut(s)	85, 840
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	6 cut(s)	158, 440, 593, 764, 937, 1163
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	4 cut(s)	333, 425, 638, 1014
TspGWI	ACGGA	1 cut(s)	209
TspMI	CCCGGG	1 cut(s)	1262
TspRI	CASTG	2 cut(s)	85, 840
XapI	RAATTY	2 cut(s)	130, 820
XceI	RCATGY	1 cut(s)	976
XmaI	CCCGGG	1 cut(s)	1262
XspI	CTAG	1 cut(s)	965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.