Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001248.1

Orthogroup ID

OG0010090

Physical Location & Seq

Genomic Coordinates Reverse (-)

5806 .. 15737

Gene Structure 9932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001248.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atgatgtcactctctcttcctcactcactccctcgctctcctcctctccagttaaacccgcccagaatcgtcccctcgtctcatcgcttcactcttttccgatgctccgccagtctcagagcctctctcaattcccaaaattccagagtcagtgttcgactccctgccgcgaatcaaccagttgcaacaaagttacaagtggaacgttttgcaagcatttcttcctcgaacagtcaagaaacatcttctgttggtgtcaacccacaagtctcagcacctcccccaccctccaatacaggatcacctctattttggattggcgttggtgttgcgttttctgcagtattttcatgggctgctggaaggttaaagaattatgcaatgcaacaagcttttaagactgtgatgggccagatgaattcacaaaatgaccagttcagtaatgctgcattttctccgggatcaccttttccatttccagcagctccaggatcgccgtctgcctcaccattttcagcatccgctcaaccttctttcacagatgtatctgcaaccagagtagatgaatcaccaccagcctcatcagcctcgtcagccactccttccacacctgctactgatgtcaaagacgaagaaaaaccaaagaaagaacagaaaagttatgcttttgtagatgttactccagaagaaactgtgcagccgagtccttttgaaagtagcgtacgagatactgaaataggttcatctaaggaagccaagaataatgtggaaggttctcagaatggagctgcttttaagcaggggacagatgctcccatggggtctcaaaatactggaaaagaaaattctgttctatcagtggaagcattggagaaaatgttggaagatccgactgtacagaagatggtttacccctatttacctgaggagatgaggaatcccactactttcaaatggatgctacaaaatccacaatatcgccaacagctagaagacatgttacgtaatatggctggaagcagtgaatgggacaatcgaatgatggattctttgaaaaattttgatcttagcagtccagaggtcaagcagcagtttgatcagattgggcttacacctgaggaagttatttcaaaaataatggacaatcctgacgttgctagggcatttcaaaatccaagagttcaagctgccataatggattgttcgcagaatccaatgagtattgcaaaatatcaaaatgataaggaggtgatggatgtcttcaataagatatcagaacttttccccggagtgtctggctcaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

435

Amino Acids

47.32

Weight (kDa)

5.27

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16620
fragaria_vesca	FvH4_2g09382 FvH4_7g07530 FvH4_7g07530 FvH4_7g07530
malus_domestica	MD02G1235900.v1.1 MD07G1079600.v1.1
prunus_persica	Prupe.2G102700_v2.0.a1
pyrus_communis	pycom02g20260 pycom02g20320 pycom07g06340
rosa_chinensis	RchiOBHm_Chr1g0339281
rosa_laevigata	RLG00000029223
rosa_multiflora	Rmu_sc0001248.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313410
rosa_rugosa	Rorug01G0143200.1 Rorug01G0143300.1
rosa_samantha	Rh1AG160100 Rh1BG126900 Rh1CG149400
rosa_wichuraiana	Rw1G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	619
Acc36I	ACCTGC	1 cut(s)	619
AccBSI	CCGCTC	1 cut(s)	524
AccII	CGCG	1 cut(s)	170
AciI	CCGC	4 cut(s)	59, 108, 168, 522
AclI	AACGTT	1 cut(s)	205
AclWI	GGATC	4 cut(s)	307, 469, 499, 881
AcsI	RAATTY	4 cut(s)	139, 418, 844, 1057
AfaI	GTAC	2 cut(s)	723, 897
AflIII	ACRYGT	1 cut(s)	996
AgsI	TTSAA	7 cut(s)	713, 952, 1054, 1131, 1169, 1184, 1264
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	5 cut(s)	392, 485, 788, 988, 1187
AluI	AGCT	5 cut(s)	392, 485, 788, 988, 1187
Alw26I	GTCTC	4 cut(s)	84, 119, 274, 828
AlwI	GGATC	4 cut(s)	307, 469, 499, 881
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	7 cut(s)	356, 446, 482, 697, 788, 1087, 1187
ApoI	RAATTY	4 cut(s)	139, 418, 844, 1057
AspS9I	GGNCC	1 cut(s)	409
AsuC2I	CCSGG	2 cut(s)	459, 1287
AsuHPI	GGTGA	6 cut(s)	294, 456, 498, 561, 1261, 1293
AxyI	CCTNAGG	2 cut(s)	924, 1116
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BarI	GAAGNNNNNNTAC	4 cut(s)	893, 925, 984, 1016
BbsI	GAAGAC	2 cut(s)	999, 1252
BbvI	GCAGC	7 cut(s)	343, 433, 494, 709, 775, 1099, 1174
BccI	CCATC	4 cut(s)	400, 898, 1036, 1246
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	489
BclI	TGATCA	1 cut(s)	1096
BcnI	CCSGG	2 cut(s)	459, 1287
BcoDI	GTCTC	4 cut(s)	84, 119, 274, 828
BfaI	CTAG	2 cut(s)	989, 1158
BfmI	CTRYAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	619
BisI	GCNGC	8 cut(s)	168, 357, 447, 483, 698, 789, 1088, 1188
BlsI	GCNGC	8 cut(s)	169, 358, 448, 484, 699, 790, 1089, 1189
Bme1390I	CCNGG	3 cut(s)	459, 489, 1287
BmgT120I	GGNCC	1 cut(s)	409
BmrFI	CCNGG	3 cut(s)	459, 489, 1287
BmsI	GCATC	4 cut(s)	92, 527, 799, 948
BpiI	GAAGAC	2 cut(s)	999, 1252
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	3 cut(s)	32, 471, 666
BpuMI	CCSGG	2 cut(s)	459, 1287
BsaAI	YACGTR	1 cut(s)	1004
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	2 cut(s)	816, 1285
BsaXI	ACNNNNNCTCC	4 cut(s)	796, 826, 863, 893
Bse1I	ACTGG	5 cut(s)	49, 111, 179, 433, 838
Bse21I	CCTNAGG	2 cut(s)	924, 1116
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	816, 1285
BseGI	GGATG	3 cut(s)	518, 963, 1261
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	5 cut(s)	130, 285, 791, 915, 1107
BseNI	ACTGG	5 cut(s)	49, 111, 179, 433, 838
BseRI	GAGGAG	3 cut(s)	30, 33, 941
BseXI	GCAGC	7 cut(s)	343, 433, 494, 709, 775, 1099, 1174
BsgI	GTGCAG	1 cut(s)	716
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	458, 1287
BsiWI	CGTACG	1 cut(s)	721
BslFI	GGGAC	3 cut(s)	56, 817, 1043
BsmAI	GTCTC	4 cut(s)	84, 119, 274, 828
BsmBI	CGTCTC	1 cut(s)	84
BsmFI	GGGAC	3 cut(s)	56, 817, 1043
BsnI	GGCC	1 cut(s)	411
Bso31I	GGTCTC	1 cut(s)	828
Bsp1407I	TGTACA	1 cut(s)	895
Bsp143I	GATC	6 cut(s)	299, 461, 491, 886, 1063, 1096
Bsp19I	CCATGG	1 cut(s)	816
BspACI	CCGC	4 cut(s)	59, 108, 168, 522
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	5 cut(s)	129, 284, 790, 916, 1108
BspFNI	CGCG	1 cut(s)	170
BspMAI	CTGCAG	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	4 cut(s)	307, 469, 499, 881
BspTNI	GGTCTC	1 cut(s)	828
BsrBI	CCGCTC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	895
BsrI	ACTGG	5 cut(s)	49, 111, 179, 433, 838
BssECI	CCNNGG	2 cut(s)	816, 1285
BssMI	GATC	6 cut(s)	299, 461, 491, 886, 1063, 1096
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	4 cut(s)	233, 403, 694, 895
Bst6I	CTCTTC	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	895
BstBAI	YACGTR	1 cut(s)	1004
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	7 cut(s)	116, 271, 747, 777, 924, 1067, 1116
BstDSI	CCRYGG	1 cut(s)	816
BstF5I	GGATG	3 cut(s)	518, 963, 1261
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	6 cut(s)	302, 464, 494, 889, 1066, 1099
BstMAI	GTCTC	4 cut(s)	84, 119, 274, 828
BstMBI	GATC	6 cut(s)	299, 461, 491, 886, 1063, 1096
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 584, 593
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	1000
BstSCI	CCNGG	3 cut(s)	457, 487, 1285
BstSFI	CTRYAG	1 cut(s)	339
BstSNI	TACGTA	1 cut(s)	1004
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	7 cut(s)	343, 433, 494, 709, 775, 1099, 1174
BstV2I	GAAGAC	2 cut(s)	999, 1252
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
Bsu36I	CCTNAGG	2 cut(s)	924, 1116
BsuRI	GGCC	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	816
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	518, 963, 1261
BtsI	GCAGTG	1 cut(s)	1027
BtsIMutI	CAGTG	3 cut(s)	157, 864, 1027
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	722, 896
CviAII	CATG	3 cut(s)	351, 817, 997
CviQI	GTAC	2 cut(s)	722, 896
DdeI	CTNAG	7 cut(s)	116, 271, 747, 777, 924, 1067, 1116
DpnI	GATC	6 cut(s)	301, 463, 493, 888, 1065, 1098
DpnII	GATC	6 cut(s)	299, 461, 491, 886, 1063, 1096
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	97
Eco105I	TACGTA	1 cut(s)	1004
Eco130I	CCWWGG	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	828
Eco32I	GATATC	1 cut(s)	1272
Eco81I	CCTNAGG	2 cut(s)	924, 1116
EcoRI	GAATTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	487
EcoRV	GATATC	1 cut(s)	1272
EcoT14I	CCWWGG	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	816
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	3 cut(s)	354, 820, 1000
FaiI	YATR	7 cut(s)	352, 378, 663, 818, 998, 1010, 1193
FalI	AAGNNNNNCTT	4 cut(s)	205, 237, 649, 681
FaqI	GGGAC	3 cut(s)	56, 817, 1043
FatI	CATG	3 cut(s)	350, 816, 996
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	1096
Fnu4HI	GCNGC	8 cut(s)	168, 357, 447, 483, 698, 789, 1088, 1188
FokI	GGATG	3 cut(s)	505, 970, 1268
Fsp4HI	GCNGC	8 cut(s)	168, 357, 447, 483, 698, 789, 1088, 1188
FspBI	CTAG	2 cut(s)	989, 1158
GluI	GCNGC	8 cut(s)	168, 357, 447, 483, 698, 789, 1088, 1188
GsuI	CTGGAG	3 cut(s)	32, 471, 666
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	2 cut(s)	458, 1287
Hin1II	CATG	3 cut(s)	354, 820, 1000
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	9 cut(s)	66, 147, 159, 172, 566, 703, 937, 1046, 1210
HpaII	CCGG	2 cut(s)	458, 1287
HphI	GGTGA	6 cut(s)	294, 456, 498, 561, 1261, 1293
Hpy166II	GTNNAC	2 cut(s)	259, 910
Hpy188I	TCNGA	6 cut(s)	101, 119, 780, 891, 1101, 1276
Hpy188III	TCNNGA	5 cut(s)	144, 236, 683, 1076, 1148
Hpy8I	GTNNAC	2 cut(s)	259, 910
HpyAV	CCTTC	4 cut(s)	357, 540, 612, 764
HpyCH4III	ACNGT	4 cut(s)	233, 403, 694, 895
HpyCH4IV	ACGT	3 cut(s)	205, 1003, 1152
HpyCH4V	TGCA	9 cut(s)	185, 212, 341, 380, 385, 449, 551, 697, 1226
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 584, 593
HpyF3I	CTNAG	7 cut(s)	116, 271, 747, 777, 924, 1067, 1116
HpySE526I	ACGT	3 cut(s)	205, 1003, 1152
Hsp92II	CATG	3 cut(s)	354, 820, 1000
Ksp22I	TGATCA	1 cut(s)	1096
Kzo9I	GATC	6 cut(s)	299, 461, 491, 886, 1063, 1096
LmnI	GCTCC	4 cut(s)	110, 490, 785, 817
Lsp1109I	GCAGC	7 cut(s)	343, 433, 494, 709, 775, 1099, 1174
LweI	GCATC	4 cut(s)	92, 527, 799, 948
MaeI	CTAG	2 cut(s)	989, 1158
MaeII	ACGT	3 cut(s)	205, 1003, 1152
MaeIII	GTNAC	4 cut(s)	6, 192, 676, 999
MalI	GATC	6 cut(s)	301, 463, 493, 888, 1065, 1098
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	6 cut(s)	299, 461, 491, 886, 1063, 1096
MboII	GAAGA	9 cut(s)	8, 213, 237, 644, 698, 896, 913, 1004, 1252
MflI	RGATCY	1 cut(s)	886
MluCI	AATT	6 cut(s)	130, 139, 373, 418, 844, 1057
MlyI	GAGTC	3 cut(s)	153, 156, 712
MmeI	TCCRAC	2 cut(s)	861, 914
MseI	TTAA	4 cut(s)	53, 368, 396, 795
MspI	CCGG	2 cut(s)	458, 1287
MspR9I	CCNGG	3 cut(s)	459, 489, 1287
MvaI	CCWGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	338, 584, 593
NciI	CCSGG	2 cut(s)	459, 1287
NcoI	CCATGG	1 cut(s)	816
NdeII	GATC	6 cut(s)	299, 461, 491, 886, 1063, 1096
NlaIII	CATG	3 cut(s)	354, 820, 1000
NmeAIII	GCCGAG	1 cut(s)	726
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1000
PaqCI	CACCTGC	1 cut(s)	619
PciI	ACATGT	1 cut(s)	996
PfeI	GAWTC	6 cut(s)	66, 172, 566, 937, 1046, 1210
Pfl23II	CGTACG	1 cut(s)	721
PfoI	TCCNGGA	2 cut(s)	457, 487
PkrI	GCNGC	8 cut(s)	169, 358, 448, 484, 699, 790, 1089, 1189
PleI	GAGTC	3 cut(s)	153, 155, 711
PpsI	GAGTC	3 cut(s)	153, 155, 711
Ppu21I	YACGTR	1 cut(s)	1004
PscI	ACATGT	1 cut(s)	996
Psp1406I	AACGTT	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspLI	CGTACG	1 cut(s)	721
PspPI	GGNCC	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	886
RsaI	GTAC	2 cut(s)	723, 897
RsaNI	GTAC	2 cut(s)	722, 896
SaqAI	TTAA	4 cut(s)	53, 368, 396, 795
SatI	GCNGC	8 cut(s)	168, 357, 447, 483, 698, 789, 1088, 1188
Sau3AI	GATC	6 cut(s)	299, 461, 491, 886, 1063, 1096
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	3 cut(s)	153, 156, 712
ScrFI	CCNGG	3 cut(s)	459, 489, 1287
SfaNI	GCATC	4 cut(s)	92, 527, 799, 948
SfcI	CTRYAG	1 cut(s)	339
SnaBI	TACGTA	1 cut(s)	1004
Sse9I	AATT	6 cut(s)	130, 139, 373, 418, 844, 1057
SsiI	CCGC	4 cut(s)	59, 108, 168, 522
SspMI	CTAG	2 cut(s)	989, 1158
StyD4I	CCNGG	3 cut(s)	457, 487, 1285
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	4 cut(s)	233, 403, 694, 895
TaiI	ACGT	3 cut(s)	208, 1006, 1155
TaqI	TCGA	3 cut(s)	157, 227, 1036
TasI	AATT	6 cut(s)	130, 139, 373, 418, 844, 1057
TatI	WGTACW	1 cut(s)	895
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	6 cut(s)	66, 172, 566, 937, 1046, 1210
Tru1I	TTAA	4 cut(s)	53, 368, 396, 795
Tru9I	TTAA	4 cut(s)	53, 368, 396, 795
TscAI	CASTG	3 cut(s)	157, 864, 1027
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	7 cut(s)	356, 446, 482, 697, 788, 1087, 1187
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	4 cut(s)	339, 431, 579, 732
TspRI	CASTG	3 cut(s)	157, 864, 1027
XapI	RAATTY	4 cut(s)	139, 418, 844, 1057
XceI	RCATGY	1 cut(s)	1000
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XspI	CTAG	2 cut(s)	989, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.