Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010090

Physical Location & Seq

Genomic Coordinates Reverse (-)

28216197 .. 28226160

Gene Structure 9964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1235900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGACGTCACTATCTCTTCCTCACTCGCTTCCTCGCTCGCCGCCGCTCCTCTCTTCAAACCAACCAAGAATTATCGCTCCCTCATTCAATCAATTCCCTCTCTTTCGATGCTCCGCCAATCTCAGAAACTCCAAAAATCACCAGAATTCCAGAGCCAATTGTCGCGATGGTCCCTCCACTGCCACTCGCCTCCCAGCAAAGTTAGAAGTGGCACGTTTTGCGAGCATTTCTTCTTCGAGTACCCAAGAAACATCTTCAGTTGGTGTCAACCCACAAATCTCAGTACCTCCCCCACCCACAAATGTAGGGTCGCCTTTGTTTTGGATTGGCGTTGGTGTTGGGCTTTCAGCACTATTTTCATGGGTGGCTACGAGATTAAAGAACTATGCAATGCAACAGGCTTTTAAGACTTTGATGGGTCAAATGAATCCACAAGATAGCCAGTTCAACAATGCTGGATTTTCTCCTGGGTCACCTTTTCCATTTCCACCAGCTTCAGGATCAGGGCCTTTTGGCTCACCTTTTCCACCTACTTCTCAACATTCAACGGTAGATGTATCTGCAACCAGAGTAGATGCAGCACCATCCGCACCAGCAGCACCTGCCTCATCAGCCACAGAAGCCACACCAACCACACCGATCACATCGACTGCACCATCCACCCCCACCACTGATGTCAAAAGTGACTCTGAACTAAATAAAAAGTCAAACAGATTTGCTTTTGTAGATGTTACTCCAGAAGAAACAGAACAGAAGAGTCCTTTCGAAAGTAGCTTCAAAGATGTTTCTGAAGTTTCTCAAAATGGAGCTGCTTTTAAACAGGGGGCAGATTCTTTCACCAGTTCCCAATCTACTGGAAAAGCAAAGCCTGCGATGTCAGTGGAAGCGTTGGAGAAAATGTTGGAAGATCCGACAGTGCAGAAGATGGTTTATCCCTATTTACCTGAGGAGATGAGGAATCCTACCACTTTCAAATGGATGCTACAAAATCCACAGTATCGCCAACAGCTAGAGGACATGCTAAATAATATGGGAGGAAGCAGTGAATGGGACAATCGTATGATGGATTCATTGAAAAATTTTGATCTTAGCAGTCCTGAGGTTAAGCAGCAGTTTGACCAAATTGGGCTTTCACCTGAGGAAGTAATTTCAAAAATAATGGCCAATCCTGAAGTTGCTATGGCATTTCAAAACCCAAGAGTTCAATCAGCAATCATGGATTGTTCACAGAACCCACTGAGCATTGCAAAATATCAAAACGATAAGGAGGTGATGGATGTTTTCAATAAGATATCGGAACTCTTCCCTGGGGTGTCTGGTTCGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0031090 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034357 GO:0034613 GO:0042170 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

443

Amino Acids

47.9

Weight (kDa)

5.61

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN13_C	PF16550	291 - 366	9.4e-06	UCH-binding domain
STI1-HOP_DP	PF17830	380 - 431	3.7e-11	STI1/HOP, DP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16620
fragaria_vesca	FvH4_2g09382 FvH4_7g07530 FvH4_7g07530 FvH4_7g07530
malus_domestica	MD02G1235900.v1.1 MD07G1079600.v1.1
prunus_persica	Prupe.2G102700_v2.0.a1
pyrus_communis	pycom02g20260 pycom02g20320 pycom07g06340
rosa_chinensis	RchiOBHm_Chr1g0339281
rosa_laevigata	RLG00000029223
rosa_multiflora	Rmu_sc0001248.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313410
rosa_rugosa	Rorug01G0143200.1 Rorug01G0143300.1
rosa_samantha	Rh1AG160100 Rh1BG126900 Rh1CG149400
rosa_wichuraiana	Rw1G013500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	46
AccII	CGCG	1 cut(s)	165
AciI	CCGC	4 cut(s)	41, 44, 114, 588
AclWI	GGATC	2 cut(s)	508, 902
AcoI	YGGCCR	1 cut(s)	1161
AcsI	RAATTY	2 cut(s)	145, 1078
AcuI	CTGAAG	4 cut(s)	240, 480, 810, 1191
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	241, 285
AfiI	CCNNNNNNNGG	1 cut(s)	497
AjnI	CCWGG	2 cut(s)	466, 1306
AluBI	AGCT	4 cut(s)	494, 774, 809, 1009
AluI	AGCT	4 cut(s)	494, 774, 809, 1009
AlwI	GGATC	2 cut(s)	508, 902
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	506, 1161
ApeKI	GCWGC	4 cut(s)	578, 596, 809, 1108
ApoI	RAATTY	2 cut(s)	145, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	293, 325
AspS9I	GGNCC	2 cut(s)	170, 506
AsuHPI	GGTGA	6 cut(s)	131, 465, 510, 829, 1125, 1282
AsuII	TTCGAA	1 cut(s)	765
AvaII	GGWCC	1 cut(s)	170
AxyI	CCTNAGG	3 cut(s)	945, 1098, 1137
BalI	TGGCCA	1 cut(s)	1163
BbvI	GCAGC	4 cut(s)	590, 608, 796, 1120
BccI	CCATC	7 cut(s)	161, 409, 592, 664, 919, 1057, 1267
BciT130I	CCWGG	2 cut(s)	468, 1308
BfaI	CTAG	1 cut(s)	1010
BfuAI	ACCTGC	1 cut(s)	610
BisI	GCNGC	6 cut(s)	41, 44, 579, 597, 810, 1109
BlsI	GCNGC	6 cut(s)	42, 45, 580, 598, 811, 1110
Bme1390I	CCNGG	2 cut(s)	468, 1308
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	170, 506
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	2 cut(s)	468, 1308
BmsI	GCATC	3 cut(s)	98, 565, 969
BpmI	CTGGAG	1 cut(s)	720
Bpu14I	TTCGAA	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	467, 1306, 1307
BsaXI	ACNNNNNCTCC	2 cut(s)	884, 914
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	3 cut(s)	442, 840, 859
Bse21I	CCTNAGG	3 cut(s)	945, 1098, 1137
Bse3DI	GCAATG	2 cut(s)	396, 1242
BseBI	CCWGG	2 cut(s)	468, 1308
BseDI	CCNNGG	3 cut(s)	467, 1306, 1307
BseGI	GGATG	4 cut(s)	584, 656, 984, 1282
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	2 cut(s)	396, 1242
BseMII	CTCAG	6 cut(s)	136, 294, 936, 1089, 1128, 1229
BseNI	ACTGG	3 cut(s)	442, 840, 859
BseRI	GAGGAG	2 cut(s)	38, 962
BseXI	GCAGC	4 cut(s)	590, 608, 796, 1120
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	2 cut(s)	636, 938
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	508, 1163
BslFI	GGGAC	2 cut(s)	156, 1064
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	156, 1064
BsnI	GGCC	2 cut(s)	508, 1163
Bsp119I	TTCGAA	1 cut(s)	765
Bsp143I	GATC	4 cut(s)	500, 639, 907, 1084
Bsp68I	TCGCGA	1 cut(s)	165
BspACI	CCGC	4 cut(s)	41, 44, 114, 588
BspANI	GGCC	2 cut(s)	508, 1163
BspCNI	CTCAG	6 cut(s)	135, 293, 937, 1090, 1129, 1230
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	2 cut(s)	508, 902
BspT104I	TTCGAA	1 cut(s)	765
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	396, 1242
BsrI	ACTGG	3 cut(s)	442, 840, 859
BssECI	CCNNGG	3 cut(s)	467, 1306, 1307
BssMI	GATC	4 cut(s)	500, 639, 907, 1084
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	468, 1308
Bst4CI	ACNGT	3 cut(s)	550, 916, 996
Bst6I	CTCTTC	4 cut(s)	21, 58, 749, 1307
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	3 cut(s)	218, 602, 869
BstBI	TTCGAA	1 cut(s)	765
BstC8I	GCNNGC	3 cut(s)	38, 223, 870
BstDEI	CTNAG	7 cut(s)	122, 280, 945, 1088, 1098, 1137, 1238
BstEII	GGTNACC	1 cut(s)	471
BstF5I	GGATG	4 cut(s)	584, 656, 984, 1282
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	503, 642, 910, 1087
BstMBI	GATC	4 cut(s)	500, 639, 907, 1084
BstMWI	GCNNNNNNNGC	7 cut(s)	218, 587, 596, 602, 611, 620, 869
BstNI	CCWGG	2 cut(s)	468, 1308
BstNSI	RCATGY	1 cut(s)	1021
BstPI	GGTNACC	1 cut(s)	471
BstSCI	CCNGG	2 cut(s)	466, 1306
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	590, 608, 796, 1120
BstX2I	RGATCY	1 cut(s)	907
BstXI	CCANNNNNNTGG	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	907
Bsu36I	CCTNAGG	3 cut(s)	945, 1098, 1137
BsuRI	GGCC	2 cut(s)	508, 1163
BtgZI	GCGATG	2 cut(s)	180, 887
BtsCI	GGATG	4 cut(s)	584, 656, 984, 1282
BtsI	GCAGTG	2 cut(s)	177, 1048
BtsIMutI	CAGTG	6 cut(s)	177, 669, 885, 921, 1048, 1235
BtuMI	TCGCGA	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	3 cut(s)	38, 223, 870
CaiI	CAGNNNCTG	1 cut(s)	602
Cfr13I	GGNCC	2 cut(s)	170, 506
Csp6I	GTAC	2 cut(s)	240, 284
CviAII	CATG	3 cut(s)	360, 1018, 1216
CviQI	GTAC	2 cut(s)	240, 284
DdeI	CTNAG	7 cut(s)	122, 280, 945, 1088, 1098, 1137, 1238
DpnI	GATC	4 cut(s)	502, 641, 909, 1086
DpnII	GATC	4 cut(s)	500, 639, 907, 1084
DraI	TTTAAA	1 cut(s)	817
EaeI	YGGCCR	1 cut(s)	1161
Eam1104I	CTCTTC	4 cut(s)	21, 58, 749, 1307
EarI	CTCTTC	4 cut(s)	21, 58, 749, 1307
EciI	GGCGGA	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	1293
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	4 cut(s)	240, 480, 810, 1191
Eco81I	CCTNAGG	3 cut(s)	945, 1098, 1137
Eco91I	GGTNACC	1 cut(s)	471
EcoO109I	RGGNCCY	1 cut(s)	506
EcoO65I	GGTNACC	1 cut(s)	471
EcoRI	GAATTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	466, 1306
EcoRV	GATATC	1 cut(s)	1293
FaeI	CATG	3 cut(s)	363, 1021, 1219
FaiI	YATR	7 cut(s)	361, 387, 1019, 1031, 1061, 1181, 1217
FaqI	GGGAC	2 cut(s)	156, 1064
FatI	CATG	3 cut(s)	359, 1017, 1215
Fnu4HI	GCNGC	6 cut(s)	41, 44, 579, 597, 810, 1109
FokI	GGATG	4 cut(s)	571, 643, 991, 1289
Fsp4HI	GCNGC	6 cut(s)	41, 44, 579, 597, 810, 1109
FspBI	CTAG	1 cut(s)	1010
GluI	GCNGC	6 cut(s)	41, 44, 579, 597, 810, 1109
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	508, 1163
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	363, 1021, 1219
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	6 cut(s)	427, 686, 757, 830, 958, 1067
HphI	GGTGA	6 cut(s)	131, 465, 510, 829, 1125, 1282
Hpy166II	GTNNAC	2 cut(s)	268, 1226
Hpy188I	TCNGA	5 cut(s)	125, 691, 790, 912, 1297
Hpy188III	TCNNGA	6 cut(s)	150, 164, 498, 737, 1097, 1169
Hpy8I	GTNNAC	2 cut(s)	268, 1226
HpyCH4III	ACNGT	3 cut(s)	550, 916, 996
HpyCH4IV	ACGT	2 cut(s)	5, 214
HpyCH4V	TGCA	7 cut(s)	389, 394, 563, 578, 653, 919, 1247
HpyF10VI	GCNNNNNNNGC	7 cut(s)	218, 587, 596, 602, 611, 620, 869
HpyF3I	CTNAG	7 cut(s)	122, 280, 945, 1088, 1098, 1137, 1238
HpySE526I	ACGT	2 cut(s)	5, 214
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	363, 1021, 1219
Kzo9I	GATC	4 cut(s)	500, 639, 907, 1084
LmnI	GCTCC	4 cut(s)	51, 82, 116, 806
Lsp1109I	GCAGC	4 cut(s)	590, 608, 796, 1120
LweI	GCATC	3 cut(s)	98, 565, 969
MaeI	CTAG	1 cut(s)	1010
MaeII	ACGT	2 cut(s)	5, 214
MaeIII	GTNAC	4 cut(s)	6, 471, 683, 730
MalI	GATC	4 cut(s)	502, 641, 909, 1086
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	4 cut(s)	500, 639, 907, 1084
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	907
MlsI	TGGCCA	1 cut(s)	1163
MluCI	AATT	7 cut(s)	69, 92, 145, 157, 1078, 1122, 1146
MluNI	TGGCCA	1 cut(s)	1163
MlyI	GAGTC	2 cut(s)	680, 766
MmeI	TCCRAC	3 cut(s)	870, 882, 935
Mox20I	TGGCCA	1 cut(s)	1163
MscI	TGGCCA	1 cut(s)	1163
MseI	TTAA	5 cut(s)	377, 405, 816, 1104, 1327
Msp20I	TGGCCA	1 cut(s)	1163
MspR9I	CCNGG	2 cut(s)	468, 1308
MunI	CAATTG	1 cut(s)	157
MvaI	CCWGG	2 cut(s)	468, 1308
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	7 cut(s)	218, 587, 596, 602, 611, 620, 869
NdeII	GATC	4 cut(s)	500, 639, 907, 1084
NlaIII	CATG	3 cut(s)	363, 1021, 1219
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	3 cut(s)	6, 471, 683
NruI	TCGCGA	1 cut(s)	165
NspI	RCATGY	1 cut(s)	1021
NspV	TTCGAA	1 cut(s)	765
PaqCI	CACCTGC	1 cut(s)	610
PasI	CCCWGGG	1 cut(s)	1307
PfeI	GAWTC	4 cut(s)	427, 830, 958, 1067
PkrI	GCNGC	6 cut(s)	42, 45, 580, 598, 811, 1110
PleI	GAGTC	2 cut(s)	680, 765
PpsI	GAGTC	2 cut(s)	680, 765
Psp6I	CCWGG	2 cut(s)	466, 1306
PspEI	GGTNACC	1 cut(s)	471
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	2 cut(s)	466, 1306
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	170, 506
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	907
RruI	TCGCGA	1 cut(s)	165
RsaI	GTAC	2 cut(s)	241, 285
RsaNI	GTAC	2 cut(s)	240, 284
SaqAI	TTAA	5 cut(s)	377, 405, 816, 1104, 1327
SatI	GCNGC	6 cut(s)	41, 44, 579, 597, 810, 1109
Sau3AI	GATC	4 cut(s)	500, 639, 907, 1084
Sau96I	GGNCC	2 cut(s)	170, 506
SchI	GAGTC	2 cut(s)	680, 766
ScrFI	CCNGG	2 cut(s)	468, 1308
SfaNI	GCATC	3 cut(s)	98, 565, 969
SfuI	TTCGAA	1 cut(s)	765
SinI	GGWCC	1 cut(s)	170
Sse9I	AATT	7 cut(s)	69, 92, 145, 157, 1078, 1122, 1146
SsiI	CCGC	4 cut(s)	41, 44, 114, 588
SspMI	CTAG	1 cut(s)	1010
StyD4I	CCNGG	2 cut(s)	466, 1306
TaaI	ACNGT	3 cut(s)	550, 916, 996
TaiI	ACGT	2 cut(s)	8, 217
TaqI	TCGA	4 cut(s)	106, 236, 647, 765
TasI	AATT	7 cut(s)	69, 92, 145, 157, 1078, 1122, 1146
TauI	GCSGC	2 cut(s)	43, 46
TfiI	GAWTC	4 cut(s)	427, 830, 958, 1067
Tru1I	TTAA	5 cut(s)	377, 405, 816, 1104, 1327
Tru9I	TTAA	5 cut(s)	377, 405, 816, 1104, 1327
TscAI	CASTG	6 cut(s)	184, 676, 885, 921, 1048, 1242
TseFI	GTSAC	3 cut(s)	6, 471, 683
TseI	GCWGC	4 cut(s)	578, 596, 809, 1108
Tsp45I	GTSAC	3 cut(s)	6, 471, 683
TspDTI	ATGAA	3 cut(s)	348, 440, 1059
TspRI	CASTG	6 cut(s)	184, 676, 885, 921, 1048, 1242
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	2 cut(s)	145, 1078
XceI	RCATGY	1 cut(s)	1021
XspI	CTAG	1 cut(s)	1010
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.