MD07G1079600.v1.1

Protein TIC 40, chloroplastic-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
7698129 .. 7706843
8715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1079600.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGACGTCTCTGTCTCTTCCTCACTCGCTTCCTCGCTCGCCGCCGCTCCTCCATCCAAACCAACCAAGAATTCTCGCTCCCTCATTCAATCGATTCCCTCTCTTTCGATGCTCCGCCAATCTCAGAAACTCCAAAAAGCACCAAAATTCCAGAGCCACTGATCGCTTCCCTACCCCTCGCCTCCCAGCAAAGTTAGAAGTGGAACGATTTGCGAGCATTTCTTCTTCGAGTACCCAAGAAACATCTTCAGTTGGTGTCAACCCACAAATCTCAGTACCTCCCCCACCCTCCTATGTAGGGTCGCCTCTGTTTTGGATTGGAGTTGGTGTTGGGCTTTCAGCACTATTTTCATGGGTAGCTACAAGATTAAAGAATTATGCTATGCAACAAGCTTTTAAGACTTTGATGGGTCAAATGAATCCACAAGATAGCCAGTTCAACAATGCTGGATTTTCTCCGGGGTCACCTTTTCCGTTTCCATCGGCTCCAGGATCAGGGCCTTTTGGCTCACCTTTTCCACCTACTTCCCAACATTCGACAGTAGATGTATCTGCAACCAGAGTAGATGCAGCACCATCCGCACCAGCAGCACCATCCTCCGCACCAGCAGCACAAGCCACACCTACCACGCCGACCACACCAGCCACCCCCGCCACTGATGTCAAAAGTGACTCAGAACTAAATAAAAAGTCAAACAGATTTGCTTTTGTAGATGTCACTCCAGAAGAAACAGAGCAAAAGAGTCCTTTCGAAAGTAGCTTAAAAGATGTTTCTGAAGCAAGTTCATCTAAGGGTACCCAGAATGATGTGGAAGTTTCTCAAAATGGAGCTGCTTTTAAGCAGGGGGCAGGTTCTTTCACCGGTTCCCAATCTACTGGAAAAGAAAATCCTGCAATATCAGTGGAAGCCTTGGAGAAAATGTTGGAAGATCCGACAGTGCAGAAGATGGTTTATCCCTATTTACCAGAGGAGATGAGGAATCCTACCACTTTCAAATGGATGCTACAAAATCCAGAGTATCGCAAACAGCTAGAGGACATGCTAAATAATATGGGCGGAAGCAGTGAATGGGACAATCGTATGATGGATTCATTGAAAAATTTTGATCTTAGCAGTCCTGAGGTTAAGCAGCAGTTTGACCAAATTGGGCTTTCACCTGAGGAAGTAATTTCAAAAATAATGGCCAATCCTGAAGTTGCTATGGCATTTCAAAACCCAAGAGTTCAAGCAGCAATCATGGATTGTTCACAGAACCCACTGAGCATTGCAAAATATCAAAACGATAAGGAGGTTATGGATGTTTTCAATAAGATATCAGAACTCTTCCCTGGGGTGTCTGGTTCGCCTTAA

Protein Analysis

450

Amino Acids

48.74

Weight (kDa)

5.75

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STI1-HOP_DP PF17830 387 - 438 3.1e-11 STI1/HOP, DP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 839
Acc65I GGTACC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 794
AccBSI CCGCTC 1 cut(s) 46
AciI CCGC 7 cut(s) 41, 44, 114, 579, 600, 651, 1056
AclWI GGATC 2 cut(s) 499, 923
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 3 cut(s) 69, 145, 1099
AcuI CTGAAG 3 cut(s) 231, 795, 1212
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 232, 276, 796
AfiI CCNNNNNNNGG 2 cut(s) 297, 494
AgeI ACCGGT 1 cut(s) 860
AgsI TTSAA 8 cut(s) 88, 439, 994, 1096, 1173, 1211, 1226, 1306
AjnI CCWGG 2 cut(s) 487, 1327
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 5 cut(s) 359, 392, 759, 830, 1030
AluI AGCT 5 cut(s) 359, 392, 759, 830, 1030
Alw26I GTCTC 2 cut(s) 12, 18
AlwI GGATC 2 cut(s) 499, 923
AoxI GGCC 2 cut(s) 497, 1182
ApeKI GCWGC 6 cut(s) 569, 587, 608, 830, 1129, 1229
ApoI RAATTY 3 cut(s) 69, 145, 1099
AsiGI ACCGGT 1 cut(s) 860
Asp718I GGTACC 1 cut(s) 794
AspS9I GGNCC 1 cut(s) 497
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 4 cut(s) 456, 501, 850, 1146
AsuII TTCGAA 1 cut(s) 750
AxyI CCTNAGG 2 cut(s) 1119, 1158
BalI TGGCCA 1 cut(s) 1184
BanI GGYRCC 1 cut(s) 794
BbvI GCAGC 6 cut(s) 581, 599, 620, 817, 1141, 1241
BccI CCATC 7 cut(s) 60, 400, 487, 583, 601, 940, 1078
BciT130I CCWGG 2 cut(s) 489, 1329
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 2 cut(s) 12, 18
BfaI CTAG 1 cut(s) 1031
BfuAI ACCTGC 1 cut(s) 839
BisI GCNGC 8 cut(s) 41, 44, 570, 588, 609, 831, 1130, 1230
BlsI GCNGC 8 cut(s) 42, 45, 571, 589, 610, 832, 1131, 1231
Bme1390I CCNGG 3 cut(s) 459, 489, 1329
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 3 cut(s) 486, 796, 865
BmrFI CCNGG 3 cut(s) 459, 489, 1329
BmsI GCATC 3 cut(s) 98, 556, 990
BpmI CTGGAG 2 cut(s) 471, 705
Bpu14I TTCGAA 1 cut(s) 750
BpuMI CCSGG 1 cut(s) 459
Bsa29I ATCGAT 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 458, 909, 1327, 1328
BsaWI WCCGGW 1 cut(s) 860
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 905, 935
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 494
Bse118I RCCGGY 1 cut(s) 860
Bse1I ACTGG 2 cut(s) 433, 880
Bse21I CCTNAGG 2 cut(s) 1119, 1158
Bse3DI GCAATG 1 cut(s) 1263
BseBI CCWGG 2 cut(s) 489, 1329
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 4 cut(s) 458, 909, 1327, 1328
BseGI GGATG 5 cut(s) 52, 575, 593, 1005, 1303
BseLI CCNNNNNNNGG 2 cut(s) 297, 494
BseMI GCAATG 1 cut(s) 1263
BseMII CTCAG 6 cut(s) 136, 285, 687, 1110, 1149, 1250
BseNI ACTGG 2 cut(s) 433, 880
BseRI GAGGAG 2 cut(s) 38, 983
BseXI GCAGC 6 cut(s) 581, 599, 620, 817, 1141, 1241
BseYI CCCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 959
BshFI GGCC 2 cut(s) 499, 1184
BshNI GGYRCC 1 cut(s) 794
BshTI ACCGGT 1 cut(s) 860
BshVI ATCGAT 1 cut(s) 91
BsiSI CCGG 2 cut(s) 458, 861
BslFI GGGAC 1 cut(s) 1085
BslI CCNNNNNNNGG 2 cut(s) 297, 494
BsmAI GTCTC 2 cut(s) 12, 18
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 1085
BsnI GGCC 2 cut(s) 499, 1184
Bsp119I TTCGAA 1 cut(s) 750
Bsp143I GATC 4 cut(s) 160, 491, 928, 1105
BspACI CCGC 7 cut(s) 41, 44, 114, 579, 600, 651, 1056
BspANI GGCC 2 cut(s) 499, 1184
BspCNI CTCAG 6 cut(s) 135, 284, 686, 1111, 1150, 1251
BspDI ATCGAT 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 486, 796, 865
BspMI ACCTGC 1 cut(s) 839
BspPI GGATC 2 cut(s) 499, 923
BspT104I TTCGAA 1 cut(s) 750
BspT107I GGYRCC 1 cut(s) 794
BsrBI CCGCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 1263
BsrFI RCCGGY 1 cut(s) 860
BsrI ACTGG 2 cut(s) 433, 880
BssAI RCCGGY 1 cut(s) 860
BssECI CCNNGG 4 cut(s) 458, 909, 1327, 1328
BssMI GATC 4 cut(s) 160, 491, 928, 1105
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 909
Bst2UI CCWGG 2 cut(s) 489, 1329
Bst4CI ACNGT 2 cut(s) 541, 937
Bst6I CTCTTC 2 cut(s) 21, 1328
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 38, 214
BstDEI CTNAG 8 cut(s) 122, 271, 673, 789, 1109, 1119, 1158, 1259
BstEII GGTNACC 1 cut(s) 462
BstF5I GGATG 5 cut(s) 52, 575, 593, 1005, 1303
BstKTI GATC 4 cut(s) 163, 494, 931, 1108
BstMAI GTCTC 2 cut(s) 12, 18
BstMBI GATC 4 cut(s) 160, 491, 928, 1105
BstMWI GCNNNNNNNGC 5 cut(s) 578, 587, 608, 614, 650
BstNI CCWGG 2 cut(s) 489, 1329
BstNSI RCATGY 1 cut(s) 1042
BstPI GGTNACC 1 cut(s) 462
BstSCI CCNGG 3 cut(s) 457, 487, 1327
BstV1I GCAGC 6 cut(s) 581, 599, 620, 817, 1141, 1241
BstX2I RGATCY 1 cut(s) 928
BstXI CCANNNNNNTGG 1 cut(s) 875
BstYI RGATCY 1 cut(s) 928
Bsu15I ATCGAT 1 cut(s) 91
Bsu36I CCTNAGG 2 cut(s) 1119, 1158
BsuRI GGCC 2 cut(s) 499, 1184
BsuTUI ATCGAT 1 cut(s) 91
BtsCI GGATG 5 cut(s) 52, 575, 593, 1005, 1303
BtsI GCAGTG 1 cut(s) 1069
BtsIMutI CAGTG 6 cut(s) 156, 654, 906, 942, 1069, 1256
BveI ACCTGC 1 cut(s) 839
Cac8I GCNNGC 2 cut(s) 38, 214
Cfr10I RCCGGY 1 cut(s) 860
Cfr13I GGNCC 1 cut(s) 497
ClaI ATCGAT 1 cut(s) 91
Csp6I GTAC 3 cut(s) 231, 275, 795
CspAI ACCGGT 1 cut(s) 860
CspCI CAANNNNNGTGG 2 cut(s) 882, 917
CviAII CATG 3 cut(s) 351, 1039, 1237
CviQI GTAC 3 cut(s) 231, 275, 795
DdeI CTNAG 8 cut(s) 122, 271, 673, 789, 1109, 1119, 1158, 1259
DpnI GATC 4 cut(s) 162, 493, 930, 1107
DpnII GATC 4 cut(s) 160, 491, 928, 1105
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 1182
Eam1104I CTCTTC 2 cut(s) 21, 1328
EarI CTCTTC 2 cut(s) 21, 1328
EciI GGCGGA 2 cut(s) 103, 1071
Eco130I CCWWGG 1 cut(s) 909
Eco32I GATATC 1 cut(s) 1314
Eco57I CTGAAG 3 cut(s) 231, 795, 1212
Eco81I CCTNAGG 2 cut(s) 1119, 1158
Eco91I GGTNACC 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 497
EcoO65I GGTNACC 1 cut(s) 462
EcoRI GAATTC 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 487, 1327
EcoRV GATATC 1 cut(s) 1314
EcoT14I CCWWGG 1 cut(s) 909
ErhI CCWWGG 1 cut(s) 909
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 3 cut(s) 354, 1042, 1240
FaqI GGGAC 1 cut(s) 1085
FatI CATG 3 cut(s) 350, 1038, 1236
FauI CCCGC 1 cut(s) 658
Fnu4HI GCNGC 8 cut(s) 41, 44, 570, 588, 609, 831, 1130, 1230
FokI GGATG 5 cut(s) 39, 562, 580, 1012, 1310
Fsp4HI GCNGC 8 cut(s) 41, 44, 570, 588, 609, 831, 1130, 1230
FspBI CTAG 1 cut(s) 1031
GluI GCNGC 8 cut(s) 41, 44, 570, 588, 609, 831, 1130, 1230
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 2 cut(s) 471, 705
HaeIII GGCC 2 cut(s) 499, 1184
HapII CCGG 2 cut(s) 458, 861
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 354, 1042, 1240
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 6 cut(s) 93, 418, 671, 742, 979, 1088
HpaII CCGG 2 cut(s) 458, 861
HphI GGTGA 4 cut(s) 456, 501, 850, 1146
Hpy166II GTNNAC 2 cut(s) 259, 1247
Hpy188I TCNGA 5 cut(s) 125, 676, 775, 933, 1318
Hpy188III TCNNGA 5 cut(s) 150, 722, 1013, 1118, 1190
Hpy8I GTNNAC 2 cut(s) 259, 1247
HpyCH4III ACNGT 2 cut(s) 541, 937
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 6 cut(s) 385, 554, 569, 893, 940, 1268
HpyF10VI GCNNNNNNNGC 5 cut(s) 578, 587, 608, 614, 650
HpyF3I CTNAG 8 cut(s) 122, 271, 673, 789, 1109, 1119, 1158, 1259
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 354, 1042, 1240
KpnI GGTACC 1 cut(s) 798
Kzo9I GATC 4 cut(s) 160, 491, 928, 1105
LmnI GCTCC 5 cut(s) 51, 82, 116, 490, 827
Lsp1109I GCAGC 6 cut(s) 581, 599, 620, 817, 1141, 1241
LweI GCATC 3 cut(s) 98, 556, 990
MaeI CTAG 1 cut(s) 1031
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 3 cut(s) 462, 668, 715
MalI GATC 4 cut(s) 162, 493, 930, 1107
MbiI CCGCTC 1 cut(s) 46
MboI GATC 4 cut(s) 160, 491, 928, 1105
MboII GAAGA 8 cut(s) 8, 213, 216, 237, 737, 938, 955, 1315
MflI RGATCY 1 cut(s) 928
MlsI TGGCCA 1 cut(s) 1184
MluCI AATT 6 cut(s) 69, 145, 373, 1099, 1143, 1167
MluNI TGGCCA 1 cut(s) 1184
MlyI GAGTC 2 cut(s) 665, 751
MmeI TCCRAC 2 cut(s) 903, 956
Mox20I TGGCCA 1 cut(s) 1184
MscI TGGCCA 1 cut(s) 1184
MseI TTAA 6 cut(s) 368, 396, 761, 837, 1125, 1348
Msp20I TGGCCA 1 cut(s) 1184
MspI CCGG 2 cut(s) 458, 861
MspR9I CCNGG 3 cut(s) 459, 489, 1329
MvaI CCWGG 2 cut(s) 489, 1329
MwoI GCNNNNNNNGC 5 cut(s) 578, 587, 608, 614, 650
NciI CCSGG 1 cut(s) 459
NdeII GATC 4 cut(s) 160, 491, 928, 1105
NlaIII CATG 3 cut(s) 354, 1042, 1240
NlaIV GGNNCC 3 cut(s) 486, 796, 865
NmuCI GTSAC 3 cut(s) 462, 668, 715
NspI RCATGY 1 cut(s) 1042
NspV TTCGAA 1 cut(s) 750
PasI CCCWGGG 1 cut(s) 1328
PfeI GAWTC 4 cut(s) 93, 418, 979, 1088
PfoI TCCNGGA 1 cut(s) 487
PinAI ACCGGT 1 cut(s) 860
PkrI GCNGC 8 cut(s) 42, 45, 571, 589, 610, 832, 1131, 1231
PleI GAGTC 2 cut(s) 665, 750
PpsI GAGTC 2 cut(s) 665, 750
Psp6I CCWGG 2 cut(s) 487, 1327
PspEI GGTNACC 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 2 cut(s) 487, 1327
PspN4I GGNNCC 3 cut(s) 486, 796, 865
PspPI GGNCC 1 cut(s) 497
PsuI RGATCY 1 cut(s) 928
RsaI GTAC 3 cut(s) 232, 276, 796
RsaNI GTAC 3 cut(s) 231, 275, 795
SaqAI TTAA 6 cut(s) 368, 396, 761, 837, 1125, 1348
SatI GCNGC 8 cut(s) 41, 44, 570, 588, 609, 831, 1130, 1230
Sau3AI GATC 4 cut(s) 160, 491, 928, 1105
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 2 cut(s) 665, 751
ScrFI CCNGG 3 cut(s) 459, 489, 1329
SfaNI GCATC 3 cut(s) 98, 556, 990
SfuI TTCGAA 1 cut(s) 750
Sse9I AATT 6 cut(s) 69, 145, 373, 1099, 1143, 1167
SsiI CCGC 7 cut(s) 41, 44, 114, 579, 600, 651, 1056
SspMI CTAG 1 cut(s) 1031
StyD4I CCNGG 3 cut(s) 457, 487, 1327
StyI CCWWGG 1 cut(s) 909
TaaI ACNGT 2 cut(s) 541, 937
TaiI ACGT 1 cut(s) 8
TaqI TCGA 5 cut(s) 91, 106, 227, 536, 750
TasI AATT 6 cut(s) 69, 145, 373, 1099, 1143, 1167
TauI GCSGC 2 cut(s) 43, 46
TfiI GAWTC 4 cut(s) 93, 418, 979, 1088
Tru1I TTAA 6 cut(s) 368, 396, 761, 837, 1125, 1348
Tru9I TTAA 6 cut(s) 368, 396, 761, 837, 1125, 1348
TscAI CASTG 6 cut(s) 163, 661, 906, 942, 1069, 1263
TseFI GTSAC 3 cut(s) 462, 668, 715
TseI GCWGC 6 cut(s) 569, 587, 608, 830, 1129, 1229
Tsp45I GTSAC 3 cut(s) 462, 668, 715
TspDTI ATGAA 4 cut(s) 339, 431, 774, 1080
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 6 cut(s) 163, 661, 906, 942, 1069, 1263
XapI RAATTY 3 cut(s) 69, 145, 1099
XceI RCATGY 1 cut(s) 1042
XspI CTAG 1 cut(s) 1031
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.