pycom07g06340

Protein TIC 40, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
5613087 .. 5622135
9049 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06340.10

Sequence Viewer

Length: 1527 bp
ATGCCCATATTCATTAATATATTAATTGAAAAAAAAAGGGAGAGAGACTCTTGGGCTCAGGTTCTTCTTCTTCTTCAGTTACACAAGGAAACCCTACCAAAGCTTTGCGTTTTATGCTTTATACTGGTTCTGGGTTGGTACAATTGCAGTGCCCTTTTGCTTGATTGTTTCGTAGCAAATCATGACGTCTCTGTCTCTTCCTCACTCGCTTCCTCGCTCGCCGCCGCTCCTCCATTCAAACCAACCAAGAATTCTCGCTCCCTCATTCAATCGATTCCCTCTCTTTCGATGCTCCGCCAATCTCAGAAACTCCAAAAATCACCAAAATTCCAGACCCCCTGGTCGCTTCACTGCCCCTCGCCTCCCAGCAAAGTTAGAAGTGGAACGTTTTGCGAGCATTTCTTCTTCGAGTACCCAAGAAACATCTTCAATTGGTGTCAACCCACAAATCTCAGTACCTCCCCCTCCCTCAAATGTGTAGCTACGAGATTAAAGAATTATGCAATGCAACAAGCTTTTAAGACGTTGATGGGTCAAATGAATCCACAAGATAGCCAGTTCAACAATGCTGGATTTTCTCCGGGGTCACCTTTTCCGTTTCCATCAGCTCCAGGATCAGGGCCTTTTGGCTCACCTTTTCCACCTACTTCCCAACATTCGACAGTAGATGTATCTGCAACCAGAGTAGATGCAGCACCATCCGCAACAGCAGCACCAGCCTCATCAGCCACACAAGCCACACCTACCACGCCGACCACATCGGCCACACCTACCTCAGCAGCACCTACCTCAGCAGCACCAGCCTCATCAGCCACGCCGACCACATCGGCCACCCCCGCCACTGATGTCAAAAGTGACTCAGAACTAAATAAAAAGTCAAGATTTGAAGAAACAGAGCAAAAGAATCCTTTCGAAAGTGGCTTAAAAGATGTTTCTGAAGCAAGTTCATCTAAGGGTACCCAGAATGATGTGGAAGTTTCTCAAAATGGAGCTACTTTTAAGCAGGGGGCAGGTTCTTTCACCGGTTCCCAATCTACTGGAAAAGAAAATCCTGCAATATCAGTGGAAGCCTTGGAGAAAATGTTGGAAGATCCCACAGTGCAGAAGATGGTTTATCCCTATTTACCAGAGGAGATGAGGAATCCTACCACTTTCAAATGGATGCTACAAAATCCAGAGTATCGCCAACAGCTAGAGGACATGCTAAATAATATGGGCGGAAGCAGTGAATGGGACAATCGTATGATGGATTCGTTGAAAAATTTTGATCGATCTCAAATGCAATTTAGCAGTCCTGAGGTTAAGCAGCAGTTTGACCAAATTGGGCTTTCACCTGAAGAAGTAATTTCAAAAATAATGGCCAATCCTGAAGTTGCTATGGCATTTCAAAACCCAAGAGTTCAAGCAGCAATCATGGATTGTTCACAGAACCCACTGAGCATTGCAAAATATCAAAACGATAAGGAGGTTATGGATGTTTTCAATAAGATATCAGAACTCTTCCCTGGGGTGTCTGGTTCGCCTTAA

Protein Analysis

509

Amino Acids

55.55

Weight (kDa)

6.28

Isoelectric Point (pI)

57.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 191, 340
AatII GACGTC 1 cut(s) 189
Acc36I ACCTGC 1 cut(s) 1001
Acc65I GGTACC 1 cut(s) 956
AccB1I GGYRCC 1 cut(s) 956
AccBSI CCGCTC 1 cut(s) 227
AciI CCGC 6 cut(s) 222, 225, 295, 702, 837, 1218
AclI AACGTT 1 cut(s) 386
AclWI GGATC 2 cut(s) 622, 1085
AcoI YGGCCR 3 cut(s) 762, 828, 1359
AcsI RAATTY 3 cut(s) 250, 326, 1261
AcuI CTGAAG 4 cut(s) 59, 957, 1356, 1389
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 4 cut(s) 140, 413, 457, 958
AfiI CCNNNNNNNGG 1 cut(s) 617
AgeI ACCGGT 1 cut(s) 1022
AjnI CCWGG 3 cut(s) 338, 610, 1504
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 6 cut(s) 103, 482, 515, 608, 992, 1192
AluI AGCT 6 cut(s) 103, 482, 515, 608, 992, 1192
Alw26I GTCTC 3 cut(s) 39, 193, 199
AlwI GGATC 2 cut(s) 622, 1085
AoxI GGCC 4 cut(s) 620, 762, 828, 1359
ApeKI GCWGC 6 cut(s) 692, 710, 779, 794, 1306, 1406
ApoI RAATTY 3 cut(s) 250, 326, 1261
AseI ATTAAT 2 cut(s) 15, 23
AsiGI ACCGGT 1 cut(s) 1022
Asp700I GAANNNNTTC 1 cut(s) 908
Asp718I GGTACC 1 cut(s) 956
AspS9I GGNCC 1 cut(s) 620
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 5 cut(s) 312, 579, 624, 1012, 1323
AsuII TTCGAA 1 cut(s) 912
AxyI CCTNAGG 1 cut(s) 1296
BaeGI GKGCMC 1 cut(s) 154
BalI TGGCCA 1 cut(s) 1361
BanI GGYRCC 1 cut(s) 956
BanII GRGCYC 1 cut(s) 58
BbvCI CCTCAGC 2 cut(s) 775, 790
BbvI GCAGC 6 cut(s) 704, 722, 791, 806, 1318, 1418
BccI CCATC 5 cut(s) 523, 610, 706, 1102, 1240
BciT130I CCWGG 3 cut(s) 340, 612, 1506
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 3 cut(s) 39, 193, 199
BfaI CTAG 1 cut(s) 1193
BfuAI ACCTGC 1 cut(s) 1001
BisI GCNGC 8 cut(s) 222, 225, 693, 711, 780, 795, 1307, 1407
BlsI GCNGC 8 cut(s) 223, 226, 694, 712, 781, 796, 1308, 1408
Bme1390I CCNGG 4 cut(s) 340, 582, 612, 1506
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 2 cut(s) 958, 1027
BmrFI CCNGG 4 cut(s) 340, 582, 612, 1506
BmsI GCATC 3 cut(s) 279, 679, 1152
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 3 cut(s) 57, 775, 790
Bpu14I TTCGAA 1 cut(s) 912
BpuMI CCSGG 1 cut(s) 582
Bsa29I ATCGAT 2 cut(s) 272, 1270
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 5 cut(s) 338, 581, 1071, 1504, 1505
BsaWI WCCGGW 1 cut(s) 1022
BsaXI ACNNNNNCTCC 2 cut(s) 1067, 1097
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse118I RCCGGY 1 cut(s) 1022
Bse1I ACTGG 3 cut(s) 129, 556, 1042
Bse21I CCTNAGG 1 cut(s) 1296
Bse3DI GCAATG 2 cut(s) 510, 1440
BseBI CCWGG 3 cut(s) 340, 612, 1506
BseCI ATCGAT 2 cut(s) 272, 1270
BseDI CCNNGG 5 cut(s) 338, 581, 1071, 1504, 1505
BseGI GGATG 3 cut(s) 698, 1167, 1480
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMI GCAATG 2 cut(s) 510, 1440
BseMII CTCAG 8 cut(s) 71, 317, 466, 789, 804, 873, 1287, 1427
BseNI ACTGG 3 cut(s) 129, 556, 1042
BseRI GAGGAG 2 cut(s) 219, 1145
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 6 cut(s) 704, 722, 791, 806, 1318, 1418
BseYI CCCAGC 1 cut(s) 365
BsgI GTGCAG 1 cut(s) 1121
BshFI GGCC 4 cut(s) 622, 764, 830, 1361
BshNI GGYRCC 1 cut(s) 956
BshTI ACCGGT 1 cut(s) 1022
BshVI ATCGAT 2 cut(s) 272, 1270
BsiSI CCGG 2 cut(s) 581, 1023
BslFI GGGAC 1 cut(s) 1247
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 3 cut(s) 39, 193, 199
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 1247
BsnI GGCC 4 cut(s) 622, 764, 830, 1361
Bsp119I TTCGAA 1 cut(s) 912
Bsp1286I GDGCHC 2 cut(s) 58, 154
Bsp143I GATC 4 cut(s) 614, 1090, 1267, 1271
BspACI CCGC 6 cut(s) 222, 225, 295, 702, 837, 1218
BspANI GGCC 4 cut(s) 622, 764, 830, 1361
BspCNI CTCAG 8 cut(s) 70, 316, 465, 788, 803, 872, 1288, 1428
BspDI ATCGAT 2 cut(s) 272, 1270
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 958, 1027
BspMI ACCTGC 1 cut(s) 1001
BspPI GGATC 2 cut(s) 622, 1085
BspT104I TTCGAA 1 cut(s) 912
BspT107I GGYRCC 1 cut(s) 956
BsrBI CCGCTC 1 cut(s) 227
BsrDI GCAATG 2 cut(s) 510, 1440
BsrFI RCCGGY 1 cut(s) 1022
BsrI ACTGG 3 cut(s) 129, 556, 1042
BssAI RCCGGY 1 cut(s) 1022
BssECI CCNNGG 5 cut(s) 338, 581, 1071, 1504, 1505
BssMI GATC 4 cut(s) 614, 1090, 1267, 1271
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 1071
Bst2UI CCWGG 3 cut(s) 340, 612, 1506
Bst4CI ACNGT 2 cut(s) 664, 1099
Bst6I CTCTTC 2 cut(s) 202, 1505
BstACI GRCGYC 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 912
BstC8I GCNNGC 2 cut(s) 219, 395
BstDEI CTNAG 9 cut(s) 57, 303, 452, 775, 790, 859, 951, 1296, 1436
BstEII GGTNACC 1 cut(s) 585
BstF5I GGATG 3 cut(s) 698, 1167, 1480
BstKTI GATC 4 cut(s) 617, 1093, 1270, 1274
BstMAI GTCTC 3 cut(s) 39, 193, 199
BstMBI GATC 4 cut(s) 614, 1090, 1267, 1271
BstMWI GCNNNNNNNGC 9 cut(s) 114, 701, 710, 716, 725, 734, 800, 809, 836
BstNI CCWGG 3 cut(s) 340, 612, 1506
BstNSI RCATGY 1 cut(s) 1204
BstPI GGTNACC 1 cut(s) 585
BstSCI CCNGG 4 cut(s) 338, 580, 610, 1504
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 6 cut(s) 704, 722, 791, 806, 1318, 1418
BstX2I RGATCY 1 cut(s) 1090
BstXI CCANNNNNNTGG 1 cut(s) 1037
BstYI RGATCY 1 cut(s) 1090
Bsu15I ATCGAT 2 cut(s) 272, 1270
Bsu36I CCTNAGG 1 cut(s) 1296
BsuRI GGCC 4 cut(s) 622, 764, 830, 1361
BsuTUI ATCGAT 2 cut(s) 272, 1270
BtsCI GGATG 3 cut(s) 698, 1167, 1480
BtsI GCAGTG 3 cut(s) 154, 349, 1231
BtsIMutI CAGTG 7 cut(s) 154, 349, 840, 1068, 1104, 1231, 1433
BveI ACCTGC 1 cut(s) 1001
Cac8I GCNNGC 2 cut(s) 219, 395
CciI TCATGA 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 1022
Cfr13I GGNCC 1 cut(s) 620
ClaI ATCGAT 2 cut(s) 272, 1270
Csp6I GTAC 4 cut(s) 139, 412, 456, 957
CspAI ACCGGT 1 cut(s) 1022
CspCI CAANNNNNGTGG 2 cut(s) 1044, 1079
CviAII CATG 3 cut(s) 182, 1201, 1414
CviQI GTAC 4 cut(s) 139, 412, 456, 957
DdeI CTNAG 9 cut(s) 57, 303, 452, 775, 790, 859, 951, 1296, 1436
DpnI GATC 4 cut(s) 616, 1092, 1269, 1273
DpnII GATC 4 cut(s) 614, 1090, 1267, 1271
DrdI GACNNNNNNGTC 2 cut(s) 191, 340
DseDI GACNNNNNNGTC 2 cut(s) 191, 340
EaeI YGGCCR 3 cut(s) 762, 828, 1359
Eam1104I CTCTTC 2 cut(s) 202, 1505
EarI CTCTTC 2 cut(s) 202, 1505
EciI GGCGGA 2 cut(s) 284, 1233
Eco130I CCWWGG 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 1491
Eco57I CTGAAG 4 cut(s) 59, 957, 1356, 1389
Eco81I CCTNAGG 1 cut(s) 1296
Eco91I GGTNACC 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 585
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 3 cut(s) 338, 610, 1504
EcoRV GATATC 1 cut(s) 1491
EcoT14I CCWWGG 1 cut(s) 1071
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 1071
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 3 cut(s) 185, 1204, 1417
FaqI GGGAC 1 cut(s) 1247
FatI CATG 3 cut(s) 181, 1200, 1413
FauI CCCGC 1 cut(s) 844
Fnu4HI GCNGC 8 cut(s) 222, 225, 693, 711, 780, 795, 1307, 1407
FokI GGATG 3 cut(s) 685, 1174, 1487
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 8 cut(s) 222, 225, 693, 711, 780, 795, 1307, 1407
FspBI CTAG 1 cut(s) 1193
GluI GCNGC 8 cut(s) 222, 225, 693, 711, 780, 795, 1307, 1407
GsaI CCCAGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 4 cut(s) 622, 764, 830, 1361
HapII CCGG 2 cut(s) 581, 1023
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 185, 1204, 1417
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HindIII AAGCTT 2 cut(s) 101, 513
HinfI GANTC 7 cut(s) 47, 274, 541, 857, 904, 1141, 1250
HpaII CCGG 2 cut(s) 581, 1023
HphI GGTGA 5 cut(s) 312, 579, 624, 1012, 1323
Hpy166II GTNNAC 2 cut(s) 440, 1424
Hpy188I TCNGA 4 cut(s) 306, 862, 937, 1495
Hpy188III TCNNGA 6 cut(s) 182, 331, 879, 1175, 1295, 1367
Hpy8I GTNNAC 2 cut(s) 440, 1424
HpyCH4III ACNGT 2 cut(s) 664, 1099
HpyCH4IV ACGT 3 cut(s) 186, 386, 524
HpyCH4V TGCA 9 cut(s) 147, 503, 508, 677, 692, 1055, 1102, 1282, 1445
HpyF10VI GCNNNNNNNGC 9 cut(s) 114, 701, 710, 716, 725, 734, 800, 809, 836
HpyF3I CTNAG 9 cut(s) 57, 303, 452, 775, 790, 859, 951, 1296, 1436
HpySE526I ACGT 3 cut(s) 186, 386, 524
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 185, 1204, 1417
KpnI GGTACC 1 cut(s) 960
Kzo9I GATC 4 cut(s) 614, 1090, 1267, 1271
LmnI GCTCC 5 cut(s) 232, 263, 297, 613, 989
Lsp1109I GCAGC 6 cut(s) 704, 722, 791, 806, 1318, 1418
LweI GCATC 3 cut(s) 279, 679, 1152
MaeI CTAG 1 cut(s) 1193
MaeII ACGT 3 cut(s) 186, 386, 524
MaeIII GTNAC 3 cut(s) 78, 585, 854
MalI GATC 4 cut(s) 616, 1092, 1269, 1273
MbiI CCGCTC 1 cut(s) 227
MboI GATC 4 cut(s) 614, 1090, 1267, 1271
MfeI CAATTG 2 cut(s) 142, 430
MflI RGATCY 1 cut(s) 1090
MhlI GDGCHC 2 cut(s) 58, 154
MlsI TGGCCA 1 cut(s) 1361
MluNI TGGCCA 1 cut(s) 1361
MlyI GAGTC 2 cut(s) 41, 851
MmeI TCCRAC 1 cut(s) 1065
Mox20I TGGCCA 1 cut(s) 1361
MroXI GAANNNNTTC 1 cut(s) 908
MscI TGGCCA 1 cut(s) 1361
MseI TTAA 8 cut(s) 15, 23, 491, 519, 923, 999, 1302, 1525
Msp20I TGGCCA 1 cut(s) 1361
MspI CCGG 2 cut(s) 581, 1023
MspR9I CCNGG 4 cut(s) 340, 582, 612, 1506
MunI CAATTG 2 cut(s) 142, 430
MvaI CCWGG 3 cut(s) 340, 612, 1506
MwoI GCNNNNNNNGC 9 cut(s) 114, 701, 710, 716, 725, 734, 800, 809, 836
NciI CCSGG 1 cut(s) 582
NdeII GATC 4 cut(s) 614, 1090, 1267, 1271
NlaIII CATG 3 cut(s) 185, 1204, 1417
NlaIV GGNNCC 2 cut(s) 958, 1027
NmuCI GTSAC 2 cut(s) 585, 854
NspI RCATGY 1 cut(s) 1204
NspV TTCGAA 1 cut(s) 912
PagI TCATGA 1 cut(s) 181
PasI CCCWGGG 1 cut(s) 1505
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 5 cut(s) 274, 541, 904, 1141, 1250
PfoI TCCNGGA 1 cut(s) 610
PinAI ACCGGT 1 cut(s) 1022
PkrI GCNGC 8 cut(s) 223, 226, 694, 712, 781, 796, 1308, 1408
PleI GAGTC 2 cut(s) 41, 851
PpsI GAGTC 2 cut(s) 41, 851
PshBI ATTAAT 2 cut(s) 15, 23
Psp1406I AACGTT 1 cut(s) 386
Psp6I CCWGG 3 cut(s) 338, 610, 1504
PspEI GGTNACC 1 cut(s) 585
PspFI CCCAGC 1 cut(s) 365
PspGI CCWGG 3 cut(s) 338, 610, 1504
PspN4I GGNNCC 2 cut(s) 958, 1027
PspPI GGNCC 1 cut(s) 620
PsuI RGATCY 1 cut(s) 1090
RsaI GTAC 4 cut(s) 140, 413, 457, 958
RsaNI GTAC 4 cut(s) 139, 412, 456, 957
SaqAI TTAA 8 cut(s) 15, 23, 491, 519, 923, 999, 1302, 1525
SatI GCNGC 8 cut(s) 222, 225, 693, 711, 780, 795, 1307, 1407
Sau3AI GATC 4 cut(s) 614, 1090, 1267, 1271
Sau96I GGNCC 1 cut(s) 620
SchI GAGTC 2 cut(s) 41, 851
ScrFI CCNGG 4 cut(s) 340, 582, 612, 1506
SduI GDGCHC 2 cut(s) 58, 154
SfaNI GCATC 3 cut(s) 279, 679, 1152
SfuI TTCGAA 1 cut(s) 912
SsiI CCGC 6 cut(s) 222, 225, 295, 702, 837, 1218
SspMI CTAG 1 cut(s) 1193
StyD4I CCNGG 4 cut(s) 338, 580, 610, 1504
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 2 cut(s) 664, 1099
TaiI ACGT 3 cut(s) 189, 389, 527
TaqI TCGA 6 cut(s) 272, 287, 408, 659, 912, 1270
TauI GCSGC 2 cut(s) 224, 227
TfiI GAWTC 5 cut(s) 274, 541, 904, 1141, 1250
Tru1I TTAA 8 cut(s) 15, 23, 491, 519, 923, 999, 1302, 1525
Tru9I TTAA 8 cut(s) 15, 23, 491, 519, 923, 999, 1302, 1525
TscAI CASTG 7 cut(s) 154, 356, 847, 1068, 1104, 1231, 1440
TseFI GTSAC 2 cut(s) 585, 854
TseI GCWGC 6 cut(s) 692, 710, 779, 794, 1306, 1406
Tsp45I GTSAC 2 cut(s) 585, 854
TspDTI ATGAA 2 cut(s) 554, 936
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 7 cut(s) 154, 356, 847, 1068, 1104, 1231, 1440
VspI ATTAAT 2 cut(s) 15, 23
XapI RAATTY 3 cut(s) 250, 326, 1261
XceI RCATGY 1 cut(s) 1204
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 1 cut(s) 1193
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.