Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011723

Physical Location & Seq

Genomic Coordinates Forward (+)

5755222 .. 5757003

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTGCATTTGATTATATCTCTAGCTTTTGTTCATATACATACGCTAATGCCAAAACCAAGCGTAAGCCATTGCAGACAGTGGATATCAAGGTGAAAATGGACTGTGATGGTTGTGAAAGGAGAGTTAGAAACGTGGTTCGTCGCATGAAAGGGGTGAAATCGGTGGAGGTGAACCGGAAACAGAGCCGGATAACGGTGAACGGACACGTGGACCCAAACAAGGTGTTGAAGAGAGTGAAGAGCACCGGTAAAAAGGCTGAGTTTTGGCCTTACATACCTCAACATATGGTCTATTACCCTTTTGCTCCTGGCATGTACGATAAACGTGCACCTGCAGGCCACATCCGTAATCCCACTCAATCGTTTCCAACAGCAAACGCTCCCGAGGAAAATTACGTTTCCCTCTTCAGCGACGACAACGTCCACGCCGCTTGTTCCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006950 GO:0008150 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0019725 GO:0030001 GO:0030003 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055073 GO:0055076 GO:0055080 GO:0055082 GO:0061687 GO:0065007 GO:0065008 GO:0071585 GO:0072507 GO:0097501 GO:0098754 GO:0098771 GO:1990170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

149

Amino Acids

17.0

Weight (kDa)

9.72

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	31 - 86	3.2e-13	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17450 AT5G17450
malus_domestica	MD09G1260500.v1.1
prunus_persica	Prupe.3G152300_v2.0.a1
pyrus_communis	pycom09g17500
rosa_chinensis	RchiOBHm_Chr3g0491581 RchiOBHm_Chr3g0493561
rosa_laevigata	RLG00000022704
rosa_multiflora	Rmu_sc0000927.1_g000007
rosa_roxburghii	Rroxscaffold_6G00391480 Rroxscaffold_6G00392860
rosa_rugosa	Rorug03G0262200 Rorug03G0262300 Rorug03G0262400 Rorug03G0262500.1
rosa_samantha	Rh3AG311300 Rh3BG347200 Rh3CG345300 Rh3DG347500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	343
AasI	GACNNNNNNGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	343
AciI	CCGC	1 cut(s)	432
AcuI	CTGAAG	1 cut(s)	394
AcvI	CACGTG	1 cut(s)	211
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	196, 223
AflIII	ACRYGT	1 cut(s)	208
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw21I	GWGCWC	2 cut(s)	248, 334
Alw44I	GTGCAC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	269, 340
ApaLI	GTGCAC	1 cut(s)	330
AsiGI	ACCGGT	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	4 cut(s)	106, 169, 184, 211
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	334
BbrPI	CACGTG	1 cut(s)	211
Bbv12I	GWGCWC	2 cut(s)	248, 334
BccI	CCATC	2 cut(s)	104, 449
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	312
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	343
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	2 cut(s)	177, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 223
Bse118I	RCCGGY	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	196, 223
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	334
BshFI	GGCC	2 cut(s)	271, 342
BshTI	ACCGGT	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	248, 334
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	3 cut(s)	178, 190, 249
BslI	CCNNNNNNNGG	2 cut(s)	196, 223
BsnI	GGCC	2 cut(s)	271, 342
BsoBI	CYCGRG	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	248, 334
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	2 cut(s)	271, 342
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	343
BspQI	GCTCTTC	1 cut(s)	236
BsrDI	GCAATG	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	82, 107, 199
Bst6I	CTCTTC	3 cut(s)	227, 236, 413
BstBAI	YACGTR	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	336
BstSLI	GKGCMC	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	271, 342
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	319
CspAI	ACCGGT	1 cut(s)	248
CspCI	CAANNNNNGTGG	1 cut(s)	416
CviAII	CATG	3 cut(s)	148, 316, 445
CviJI	RGCY	6 cut(s)	27, 70, 189, 260, 271, 342
CviKI_1	RGCY	6 cut(s)	27, 70, 189, 260, 271, 342
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	261
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	3 cut(s)	227, 236, 413
EarI	CTCTTC	3 cut(s)	227, 236, 413
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	394
Eco72I	CACGTG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	88
FaeI	CATG	3 cut(s)	151, 319, 448
FatI	CATG	3 cut(s)	147, 315, 444
FauNDI	CATATG	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	271, 342
HapII	CCGG	3 cut(s)	178, 190, 249
Hin1II	CATG	3 cut(s)	151, 319, 448
HpaII	CCGG	3 cut(s)	178, 190, 249
HphI	GGTGA	4 cut(s)	106, 169, 184, 211
Hpy166II	GTNNAC	5 cut(s)	175, 202, 214, 332, 427
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	5 cut(s)	175, 202, 214, 332, 427
Hpy99I	CGWCG	2 cut(s)	147, 419
HpyCH4III	ACNGT	3 cut(s)	82, 107, 199
HpyCH4IV	ACGT	5 cut(s)	135, 210, 328, 399, 423
HpyCH4V	TGCA	4 cut(s)	8, 76, 332, 338
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	5 cut(s)	135, 210, 328, 399, 423
Hsp92II	CATG	3 cut(s)	151, 319, 448
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	313, 388
LpnPI	CCDG	7 cut(s)	191, 203, 262, 297, 324, 324, 348
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	5 cut(s)	135, 210, 328, 399, 423
MboII	GAAGA	3 cut(s)	244, 253, 400
MhlI	GDGCHC	2 cut(s)	248, 334
MluCI	AATT	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	4 cut(s)	163, 291, 382, 416
MspI	CCGG	3 cut(s)	178, 190, 249
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	288
NlaIII	CATG	3 cut(s)	151, 319, 448
NlaIV	GGNNCC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	422
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	433
PmaCI	CACGTG	1 cut(s)	211
PmlI	CACGTG	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	310
PspCI	CACGTG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	422
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	236
SatI	GCNGC	1 cut(s)	432
Sau96I	GGNCC	1 cut(s)	214
SbfI	CCTGCAGG	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	312
SdaI	CCTGCAGG	1 cut(s)	340
SduI	GDGCHC	2 cut(s)	248, 334
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	214
Sse8387I	CCTGCAGG	1 cut(s)	340
Sse9I	AATT	1 cut(s)	394
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	82, 107, 199
TaiI	ACGT	5 cut(s)	138, 213, 331, 402, 426
TasI	AATT	1 cut(s)	394
TauI	GCSGC	1 cut(s)	434
TscAI	CASTG	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	24, 164
TspGWI	ACGGA	2 cut(s)	219, 338
TspRI	CASTG	1 cut(s)	87
Tth111I	GACNNNGTC	1 cut(s)	422
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	214
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.