Rh3DG347500

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011723
Physical Location & Seq
Forward (+)
39544356 .. 39545540
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG347500.1

Sequence Viewer

Length: 345 bp
ATGGATTGTGATGGCTGTGAAAGAAAAGTTAAGAAGGCTGTTTCGACTATGAAAGGTGTAGAAAGTGTGGAGGTGAACCGAAAACAAAGTCGGGTAATTGTAAACGGGTATGTGGAAGCAAACAGGGTTTTGAAGAGAGTTAAGAGCACGGGCAAAAGAGCTGAAATTTGGCCATACATCCCTCAACATCTTGTCCATTATCCACACGCCTCCGGAGCCTACGACAAAAGGGCACCACCAGGTCACGTTAAGAATACATTTGCTTTTCCGGCCTCTGATGCATCTGACAACAACATTGTCTCATTTTTCAGTGATGACAATGTAAATGCTTGTTCTATAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

114

Amino Acids

12.68

Weight (kDa)

9.24

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 1 - 52 2e-13 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AccIII TCCGGA 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 170
AcsI RAATTY 1 cut(s) 165
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 304
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 2 cut(s) 170, 270
ApoI RAATTY 1 cut(s) 165
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
AsuHPI GGTGA 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 172
BanI GGYRCC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 217, 234
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 2 cut(s) 268, 290
BsaWI WCCGGW 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 235
BshFI GGCC 2 cut(s) 172, 272
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 2 cut(s) 213, 269
BsmAI GTCTC 1 cut(s) 304
BsnI GGCC 2 cut(s) 172, 272
Bsp1286I GDGCHC 2 cut(s) 149, 235
Bsp13I TCCGGA 1 cut(s) 212
BspANI GGCC 2 cut(s) 172, 272
BspEI TCCGGA 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 217, 234
BspT107I GGYRCC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 240
Bst6I CTCTTC 1 cut(s) 128
BstF5I GGATG 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 3 cut(s) 215, 269, 278
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 235
BsuRI GGCC 2 cut(s) 172, 272
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 316
CsiI ACCWGGT 1 cut(s) 238
CviJI RGCY 6 cut(s) 15, 38, 161, 172, 218, 272
CviKI_1 RGCY 6 cut(s) 15, 38, 161, 172, 218, 272
EaeI YGGCCR 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 283
FaiI YATR 4 cut(s) 50, 111, 175, 338
FokI GGATG 1 cut(s) 164
HaeIII GGCC 2 cut(s) 172, 272
HapII CCGG 2 cut(s) 213, 269
HpaII CCGG 2 cut(s) 213, 269
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 76, 103
Hpy188I TCNGA 2 cut(s) 277, 286
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 2 cut(s) 76, 103
HpyAV CCTTC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 269, 278
HpySE526I ACGT 1 cut(s) 246
Kpn2I TCCGGA 1 cut(s) 212
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 109, 225, 226, 252, 282
LweI GCATC 2 cut(s) 268, 290
MabI ACCWGGT 1 cut(s) 238
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 242
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 149, 235
MlsI TGGCCA 1 cut(s) 172
MluCI AATT 2 cut(s) 96, 165
MluNI TGGCCA 1 cut(s) 172
MnlI CCTC 4 cut(s) 64, 192, 220, 283
Mox20I TGGCCA 1 cut(s) 172
Mph1103I ATGCAT 1 cut(s) 283
MroI TCCGGA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 172
MseI TTAA 3 cut(s) 30, 141, 249
Msp20I TGGCCA 1 cut(s) 172
MspI CCGG 2 cut(s) 213, 269
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 215, 269, 278
NlaIV GGNNCC 2 cut(s) 217, 234
NmuCI GTSAC 1 cut(s) 242
NsiI ATGCAT 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 217, 234
SaqAI TTAA 3 cut(s) 30, 141, 249
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 2 cut(s) 149, 235
SetI ASST 5 cut(s) 58, 75, 163, 244, 249
SexAI ACCWGGT 1 cut(s) 238
SfaNI GCATC 2 cut(s) 268, 290
Sse9I AATT 2 cut(s) 96, 165
StyD4I CCNGG 1 cut(s) 238
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 96, 165
Tru1I TTAA 3 cut(s) 30, 141, 249
Tru9I TTAA 3 cut(s) 30, 141, 249
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 316
XapI RAATTY 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.