RchiOBHm_Chr3g0491581

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011723
Physical Location & Seq
Reverse (-)
38322927 .. 38323653
727 bp
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UTR
Exon/CDS
Intron
PRQ45455

Sequence Viewer

Length: 432 bp
ATGGGTGCTCTTAATTATCTTTCCAACTTTTGCACTGTCACTAGAACAAGGACCAAGAGGAAAACAATGCAGAAAGGTGAGATCAATGTCAAAATGGATTGTGATGGCTATGAAAGAAAAGTTAAGAAGGCTGTTTCGACTATGAAAGAAAGTGTGGAGGTGAACCGAAAACAAAGTCGGGTAATTGTAAACGGGTATGTGGAAGCAAACAGGGTTTTGAAGAGAGTTAAGAGTACGGGCAAAAGAGCTGAAATTTGGCCATACATCCCTCAACATCTTGTCCATTATCCACACGCCTCCGGAGCCTACGACAAAAGGGCACCACCAGGTCACGTTAAGAATACATTTGCTTTTCCGGCCTCTGATGCATCTGACAACAACATTGTCTCATTTTTCAGTGATGTCAATGTAAATGCTTGTTCTATAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

143

Amino Acids

16.14

Weight (kDa)

9.85

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 29 - 81 3.7e-07 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AccIII TCCGGA 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 1 cut(s) 235
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 391
Aor13HI TCCGGA 1 cut(s) 299
AoxI GGCC 2 cut(s) 257, 357
ApoI RAATTY 1 cut(s) 252
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 89, 172
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 322
BalI TGGCCA 1 cut(s) 259
BanI GGYRCC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 10
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 304, 321
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 355, 377
BsaWI WCCGGW 1 cut(s) 299
BseAI TCCGGA 1 cut(s) 299
BseBI CCWGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 322
BshFI GGCC 2 cut(s) 259, 359
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 300, 356
BsmAI GTCTC 1 cut(s) 391
BsnI GGCC 2 cut(s) 259, 359
Bsp1286I GDGCHC 2 cut(s) 10, 322
Bsp13I TCCGGA 1 cut(s) 299
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 2 cut(s) 259, 359
BspEI TCCGGA 1 cut(s) 299
BspLI GGNNCC 2 cut(s) 304, 321
BspT107I GGYRCC 1 cut(s) 319
BssMI GATC 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 215
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 3 cut(s) 302, 356, 365
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 322
BsuRI GGCC 2 cut(s) 259, 359
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 33, 403
Cfr13I GGNCC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 1 cut(s) 234
CviJI RGCY 6 cut(s) 108, 131, 248, 259, 305, 359
CviKI_1 RGCY 6 cut(s) 108, 131, 248, 259, 305, 359
CviQI GTAC 1 cut(s) 234
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 370
FaiI YATR 5 cut(s) 111, 143, 198, 262, 425
FokI GGATG 1 cut(s) 251
FspBI CTAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 259, 359
HapII CCGG 2 cut(s) 300, 356
HpaII CCGG 2 cut(s) 300, 356
HphI GGTGA 2 cut(s) 89, 172
Hpy166II GTNNAC 2 cut(s) 163, 190
Hpy188I TCNGA 2 cut(s) 364, 373
Hpy188III TCNNGA 1 cut(s) 300
Hpy8I GTNNAC 2 cut(s) 163, 190
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 3 cut(s) 33, 70, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 356, 365
HpySE526I ACGT 1 cut(s) 333
Kpn2I TCCGGA 1 cut(s) 299
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 5 cut(s) 196, 312, 313, 339, 369
LweI GCATC 2 cut(s) 355, 377
MabI ACCWGGT 1 cut(s) 325
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 37, 329
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 10, 322
MlsI TGGCCA 1 cut(s) 259
MluCI AATT 3 cut(s) 13, 183, 252
MluNI TGGCCA 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 5 cut(s) 51, 151, 279, 307, 370
Mox20I TGGCCA 1 cut(s) 259
Mph1103I ATGCAT 1 cut(s) 370
MroI TCCGGA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 259
MseI TTAA 4 cut(s) 12, 123, 228, 336
Msp20I TGGCCA 1 cut(s) 259
MspI CCGG 2 cut(s) 300, 356
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 302, 356, 365
NdeII GATC 1 cut(s) 81
NlaIV GGNNCC 2 cut(s) 304, 321
NmuCI GTSAC 2 cut(s) 37, 329
NsiI ATGCAT 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 304, 321
PspPI GGNCC 1 cut(s) 51
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 4 cut(s) 12, 123, 228, 336
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 2 cut(s) 10, 322
SetI ASST 5 cut(s) 79, 162, 250, 331, 336
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 2 cut(s) 355, 377
SinI GGWCC 1 cut(s) 51
Sse9I AATT 3 cut(s) 13, 183, 252
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 336
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 13, 183, 252
Tru1I TTAA 4 cut(s) 12, 123, 228, 336
Tru9I TTAA 4 cut(s) 12, 123, 228, 336
TscAI CASTG 2 cut(s) 40, 403
TseFI GTSAC 2 cut(s) 37, 329
Tsp45I GTSAC 2 cut(s) 37, 329
TspDTI ATGAA 2 cut(s) 126, 158
TspRI CASTG 2 cut(s) 40, 403
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 252
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.