Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011723

Physical Location & Seq

Genomic Coordinates Reverse (-)

16609556 .. 16611269

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G152300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTTCCTCCAGAATGTGACTATATAAATACAAACTCTCACCGCATATCAATCATCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCTTTCTCCTACAGAGAAGAAAAAATGGGTGCTCTTGATTATCTTTCCAACTTTTGCACTGTCACCAGCACAAGGAGCAAGCGCAAAGCAATGCAGACAGTTGAGATCAAAGTCAAAATGGATTGTGATGGCTGTGAAAGAAGAGTCAAGAACGCTGTTACCTCCATGAAAGGTGTAAAAGCTGTGGAGGTGAACCGAAAACAAAGCCGGGTGATTGTGAGTGGGTATGTTGAACCAAACAAGGTGTTGAAGAGGGTAAAAAGTACAGGCAAGAGAGCTGAGTTTTGGCCGTACATTCCTCAACATCTGGTACACTATCCGTACGCCTCTGGAGTTTATGACAGAAGGGCACCAAATGGGTACGTCAGAAATGTGGTTCAAGCTTTTCCGGCCTCCATGAATGGCCCTGAGGAGAACATGGTCTCCCTCTTCAGTGATGATAACGTCAATGCTTGTTCCATAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

184

Amino Acids

20.66

Weight (kDa)

9.33

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17450 AT5G17450
malus_domestica	MD09G1260500.v1.1
prunus_persica	Prupe.3G152300_v2.0.a1
pyrus_communis	pycom09g17500
rosa_chinensis	RchiOBHm_Chr3g0491581 RchiOBHm_Chr3g0493561
rosa_laevigata	RLG00000022704
rosa_multiflora	Rmu_sc0000927.1_g000007
rosa_roxburghii	Rroxscaffold_6G00391480 Rroxscaffold_6G00392860
rosa_rugosa	Rorug03G0262200 Rorug03G0262300 Rorug03G0262400 Rorug03G0262500.1
rosa_samantha	Rh3AG311300 Rh3BG347200 Rh3CG345300 Rh3DG347500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	433
AciI	CCGC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	499
AfaI	GTAC	5 cut(s)	349, 377, 396, 407, 446
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	317, 334, 464
AloI	GAACNNNNNNTCC	2 cut(s)	491, 523
AluBI	AGCT	3 cut(s)	266, 362, 467
AluI	AGCT	3 cut(s)	266, 362, 467
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	511
AoxI	GGCC	3 cut(s)	371, 474, 487
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	488
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	4 cut(s)	32, 139, 286, 307
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	511
BfmI	CTRYAG	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	511
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	354, 483
BseRI	GAGGAG	1 cut(s)	509
BseSI	GKGCMC	1 cut(s)	436
BshFI	GGCC	3 cut(s)	373, 476, 489
BshNI	GGYRCC	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	292, 473
BsiWI	CGTACG	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	373, 476, 489
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	118, 436
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	3 cut(s)	373, 476, 489
BspCNI	CTCAG	2 cut(s)	355, 484
BspLI	GGNNCC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	180
BssMI	GATC	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	145, 184
Bst6I	CTCTTC	3 cut(s)	220, 329, 518
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	363, 492
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 473
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	373, 476, 489
BtsIMutI	CAGTG	2 cut(s)	141, 523
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	5 cut(s)	348, 376, 395, 406, 445
CviAII	CATG	3 cut(s)	250, 481, 502
CviJI	RGCY	8 cut(s)	216, 266, 291, 362, 373, 467, 476, 489
CviKI_1	RGCY	8 cut(s)	216, 266, 291, 362, 373, 467, 476, 489
CviQI	GTAC	5 cut(s)	348, 376, 395, 406, 445
DdeI	CTNAG	2 cut(s)	363, 492
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	371
Eam1104I	CTCTTC	3 cut(s)	220, 329, 518
EarI	CTCTTC	3 cut(s)	220, 329, 518
Eco31I	GGTCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	499
Eco81I	CCTNAGG	1 cut(s)	492
FaeI	CATG	3 cut(s)	253, 484, 505
FaiI	YATR	9 cut(s)	24, 26, 47, 251, 312, 423, 482, 503, 545
FatI	CATG	3 cut(s)	249, 480, 501
GlaI	GCGC	1 cut(s)	167
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	373, 476, 489
HapII	CCGG	2 cut(s)	292, 473
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	253, 484, 505
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	292, 473
HphI	GGTGA	4 cut(s)	32, 139, 286, 307
Hpy166II	GTNNAC	2 cut(s)	277, 397
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	4 cut(s)	11, 119, 232, 414
Hpy8I	GTNNAC	2 cut(s)	277, 397
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	2 cut(s)	145, 184
HpyCH4IV	ACGT	2 cut(s)	447, 528
HpyCH4V	TGCA	2 cut(s)	141, 178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 473
HpyF3I	CTNAG	2 cut(s)	363, 492
HpySE526I	ACGT	2 cut(s)	447, 528
Hsp92II	CATG	3 cut(s)	253, 484, 505
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	8 cut(s)	24, 163, 305, 336, 377, 399, 486, 504
MaeII	ACGT	2 cut(s)	447, 528
MaeIII	GTNAC	3 cut(s)	17, 145, 241
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	4 cut(s)	113, 237, 346, 505
MhlI	GDGCHC	2 cut(s)	118, 436
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	9 cut(s)	18, 256, 265, 330, 393, 421, 487, 487, 521
MspI	CCGG	2 cut(s)	292, 473
MspR9I	CCNGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	159, 473
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	3 cut(s)	253, 484, 505
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	2 cut(s)	17, 145
Pfl23II	CGTACG	1 cut(s)	405
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PspLI	CGTACG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	488
RsaI	GTAC	5 cut(s)	349, 377, 396, 407, 446
RsaNI	GTAC	5 cut(s)	348, 376, 395, 406, 445
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	118, 436
SetI	ASST	9 cut(s)	248, 259, 268, 276, 330, 364, 450, 469, 531
SfcI	CTRYAG	1 cut(s)	94
SsiI	CCGC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	145, 184
TaiI	ACGT	2 cut(s)	450, 531
TatI	WGTACW	1 cut(s)	347
TscAI	CASTG	2 cut(s)	148, 523
TseFI	GTSAC	2 cut(s)	17, 145
Tsp45I	GTSAC	2 cut(s)	17, 145
TspDTI	ATGAA	2 cut(s)	266, 497
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	148, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.