Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011723

Physical Location & Seq

Genomic Coordinates Reverse (-)

25326765 .. 25329629

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0262300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGGCATCAGCATCAGCTGTACAAGATGAAATCCCCTTTGAAGATGAAGGTATTATTGAAGCAATGTCTGTTAATTTTGAACAGAGTGCAGACTTCCTGGATTTGGAAACCGGAATTGATCTGTTAGGCCTACTCATTGCTGATGAGGAACCTGGAGTGGGGGGTGTCAAAGCAACACTTATGGGTATCTGGCGAACTCTTGGCCAGATCCGTATTATTAGGCTCAAGAAGAATACCTATTGTCTCACCGTAGGCTCGGAGAAGTTAGCTCGGAAGCTACTGGAGGATAGTCCTTGGAATGTAAAAGGGTATTGCTTCTCGGTCAGACATTGGCCTCGTTTTCATTCCATTGATGAACTGGAAACAAATCGAGCTATCTTCTGGATTCAAGCTCATGGAGTTCCTCTTGACCAACTAAACTCCAATAATGGAAGAAAGCTTGGAAATATGCTGGGTTCGGTAATAGAAGTTGAGGATCCAAGGGTAGCTGGAAATAGGGGATATCTCAGGTTGAGAGTCGACTTCGATTCATCAAGGCCCCTGGCCACTTTCATTCAGCTACCAAGACATAACTCCTCTATTTCAAGAATCAGGTTAAGGTATGAACACTTGAAGAACTTTTGCTTCAATTGTGGTCGTCTGGGCCATATGATATCTTCTTGTAGGTTCAGTAAGCACCCTTTATTAATCAAGATGGGGGTGGTTTATGATTCCTCCCTAGTTGCTGAACCCCCACAAAAGCCTGTGTTTACCCAAGCTCAGTATCCACTGGAATTTCCTCATGCACCCACTTCCGGCATCTTTCGCCGGAAACCTCCAATGGAAAATTCAAACTCTGAATTTGCTGCAGCTTCCAATGTGGACAGATCAGCTTTGGCACACTCTTCAACTATTGAGAAGGACAGCTCACACAGATCTCTGTCAACAAAAAAAGATACTTATCAGTCTCCTATTGTGATACAAAGACCAAAGCTCAATCTGCAACCTGACAGGCCTTGTATGTGGGATCCTGATGCACATGGGGTCTTCTATTGCAATGGAAGTGTCACACGTGCTTTTACTGGTATCCGAATACAATCTGAGTCTTGGGCCGACCCGGATTGTATCCCTTCTTGGGCTTTCAACAATAGAGAAGACTACCTTGATGCAAATCCTTTCTTCCCAATTCCTCTGAAGGCTGATAATTTGAATGGGCTTAGATCAGTCAAGCCCAATTCTGTGGAAATAGTGGAACTAGCATCTCAGGGCCCGGACCCATCTTTGGAGCCCTCAAAGGAAGAGCCCCTTCCTGTTAAAACAACAAGAAAACGCCAAAGTAAGTTTGAAGCAGGAGGCACTGAATCAAAACGTAACACCAAAAGAGCTAAGGTTATGTCTAGCCCAGGCCTTCGGTTGTCTTCGGGGGGAGGAAGAGGTAGAAGTAATGGTCGTAGGGGCAGAGGAAGGGGAAGAGCTGGTATTCGGTCTAACTCTACACTTGAAGGAACTGATGTAGGCAATTGTGCTCAAGATGACCAAGTGGAATCAGCTGATTCCTTGGCTGAAAATGAGCGACAAACTACACTTATAGGATGGAGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

527

Amino Acids

58.71

Weight (kDa)

8.85

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	48 - 116	4.7e-07	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	176 - 222	2.3e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17450 AT5G17450
malus_domestica	MD09G1260500.v1.1
prunus_persica	Prupe.3G152300_v2.0.a1
pyrus_communis	pycom09g17500
rosa_chinensis	RchiOBHm_Chr3g0491581 RchiOBHm_Chr3g0493561
rosa_laevigata	RLG00000022704
rosa_multiflora	Rmu_sc0000927.1_g000007
rosa_roxburghii	Rroxscaffold_6G00391480 Rroxscaffold_6G00392860
rosa_rugosa	Rorug03G0262200 Rorug03G0262300 Rorug03G0262400 Rorug03G0262500.1
rosa_samantha	Rh3AG311300 Rh3BG347200 Rh3CG345300 Rh3DG347500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	519
AclWI	GGATC	5 cut(s)	202, 470, 483, 1001, 1014
AcoI	YGGCCR	2 cut(s)	202, 543
AcsI	RAATTY	3 cut(s)	773, 826, 839
AcuI	CTGAAG	1 cut(s)	1193
AcvI	CACGTG	1 cut(s)	1052
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	5 cut(s)	103, 158, 794, 1114, 1261
AflIII	ACRYGT	1 cut(s)	1049
AjnI	CCWGG	4 cut(s)	96, 151, 540, 1381
AjuI	GAANNNNNNNTTGG	2 cut(s)	811, 843
Alw21I	GWGCWC	1 cut(s)	1507
Alw26I	GTCTC	2 cut(s)	248, 951
AlwI	GGATC	5 cut(s)	202, 470, 483, 1001, 1014
ApaI	GGGCCC	1 cut(s)	1250
ApeKI	GCWGC	2 cut(s)	845, 848
ApoI	RAATTY	3 cut(s)	773, 826, 839
AseI	ATTAAT	1 cut(s)	686
AspS9I	GGNCC	6 cut(s)	537, 643, 1089, 1246, 1247, 1252
AsuC2I	CCSGG	2 cut(s)	1097, 1250
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	1252
BaeGI	GKGCMC	1 cut(s)	1250
BalI	TGGCCA	2 cut(s)	204, 545
BamHI	GGATCC	2 cut(s)	475, 1006
BanII	GRGCYC	3 cut(s)	1250, 1269, 1284
BbrPI	CACGTG	1 cut(s)	1052
BbsI	GAAGAC	3 cut(s)	1018, 1140, 1389
Bbv12I	GWGCWC	1 cut(s)	1507
BbvI	GCAGC	2 cut(s)	832, 860
BccI	CCATC	3 cut(s)	688, 1264, 1566
BciT130I	CCWGG	4 cut(s)	98, 153, 542, 1383
BciVI	GTATCC	3 cut(s)	774, 1076, 1115
BcnI	CCSGG	2 cut(s)	1097, 1250
BcoDI	GTCTC	2 cut(s)	248, 951
BfaI	CTAG	3 cut(s)	719, 1235, 1377
BfmI	CTRYAG	1 cut(s)	846
BfuI	GTATCC	3 cut(s)	774, 1076, 1115
BglII	AGATCT	1 cut(s)	914
BisI	GCNGC	2 cut(s)	846, 849
BlsI	GCNGC	2 cut(s)	847, 850
Bme1390I	CCNGG	6 cut(s)	98, 153, 542, 1097, 1250, 1383
Bme18I	GGWCC	1 cut(s)	1252
BmgT120I	GGNCC	6 cut(s)	537, 643, 1089, 1246, 1247, 1252
BmiI	GGNNCC	7 cut(s)	150, 477, 539, 1008, 1248, 1254, 1266
BmrFI	CCNGG	6 cut(s)	98, 153, 542, 1097, 1250, 1383
BmsI	GCATC	6 cut(s)	14, 20, 807, 1003, 1135, 1247
BpiI	GAAGAC	3 cut(s)	1018, 1140, 1389
BpmI	CTGGAG	2 cut(s)	174, 302
Bpu10I	CCTNAGC	1 cut(s)	1365
BpuEI	CTTGAG	2 cut(s)	209, 1491
BpuMI	CCSGG	2 cut(s)	1097, 1250
BsaAI	YACGTR	1 cut(s)	1052
BsaBI	GATNNNNATC	2 cut(s)	939, 1149
BsaJI	CCNNGG	5 cut(s)	293, 479, 540, 1381, 1536
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 158, 794, 1114, 1261
Bse1I	ACTGG	4 cut(s)	285, 363, 774, 1066
Bse3DI	GCAATG	3 cut(s)	69, 135, 1042
Bse8I	GATNNNNATC	2 cut(s)	939, 1149
BseBI	CCWGG	4 cut(s)	98, 153, 542, 1383
BseDI	CCNNGG	5 cut(s)	293, 479, 540, 1381, 1536
BseGI	GGATG	1 cut(s)	1577
BseJI	GATNNNNATC	2 cut(s)	939, 1149
BseLI	CCNNNNNNNGG	5 cut(s)	103, 158, 794, 1114, 1261
BseMI	GCAATG	3 cut(s)	69, 135, 1042
BseMII	CTCAG	4 cut(s)	520, 773, 1071, 1256
BseNI	ACTGG	4 cut(s)	285, 363, 774, 1066
BseRI	GAGGAG	1 cut(s)	565
BseSI	GKGCMC	1 cut(s)	1250
BseXI	GCAGC	2 cut(s)	832, 860
BseYI	CCCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	1507
BsiSI	CCGG	5 cut(s)	111, 795, 808, 1097, 1250
BslI	CCNNNNNNNGG	5 cut(s)	103, 158, 794, 1114, 1261
BsmAI	GTCTC	2 cut(s)	248, 951
Bsp120I	GGGCCC	1 cut(s)	1246
Bsp1286I	GDGCHC	4 cut(s)	1250, 1269, 1284, 1507
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	8 cut(s)	118, 207, 475, 866, 914, 1006, 1199, 1578
BspCNI	CTCAG	4 cut(s)	519, 772, 1072, 1255
BspLI	GGNNCC	7 cut(s)	150, 477, 539, 1008, 1248, 1254, 1266
BspMAI	CTGCAG	1 cut(s)	850
BspPI	GGATC	5 cut(s)	202, 470, 483, 1001, 1014
BspQI	GCTCTTC	2 cut(s)	1272, 1444
BsrDI	GCAATG	3 cut(s)	69, 135, 1042
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	4 cut(s)	285, 363, 774, 1066
BssECI	CCNNGG	5 cut(s)	293, 479, 540, 1381, 1536
BssMI	GATC	8 cut(s)	118, 207, 475, 866, 914, 1006, 1199, 1578
BssT1I	CCWWGG	3 cut(s)	293, 479, 1536
Bst2UI	CCWGG	4 cut(s)	98, 153, 542, 1383
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	4 cut(s)	889, 1272, 1405, 1444
BstAUI	TGTACA	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	1052
BstDEI	CTNAG	6 cut(s)	506, 759, 1080, 1196, 1242, 1365
BstF5I	GGATG	1 cut(s)	1577
BstKTI	GATC	8 cut(s)	121, 210, 478, 869, 917, 1009, 1202, 1581
BstMAI	GTCTC	2 cut(s)	248, 951
BstMBI	GATC	8 cut(s)	118, 207, 475, 866, 914, 1006, 1199, 1578
BstMWI	GCNNNNNNNGC	2 cut(s)	804, 979
BstNI	CCWGG	4 cut(s)	98, 153, 542, 1383
BstSCI	CCNGG	6 cut(s)	96, 151, 540, 1095, 1248, 1381
BstSFI	CTRYAG	1 cut(s)	846
BstSLI	GKGCMC	1 cut(s)	1250
BstV1I	GCAGC	2 cut(s)	832, 860
BstV2I	GAAGAC	3 cut(s)	1018, 1140, 1389
BstX2I	RGATCY	5 cut(s)	207, 475, 914, 1006, 1578
BstXI	CCANNNNNNTGG	1 cut(s)	1219
BstYI	RGATCY	5 cut(s)	207, 475, 914, 1006, 1578
BsuI	GTATCC	3 cut(s)	774, 1076, 1115
BtsCI	GGATG	1 cut(s)	1577
BtsIMutI	CAGTG	2 cut(s)	767, 1335
Cfr13I	GGNCC	6 cut(s)	537, 643, 1089, 1246, 1247, 1252
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	3 cut(s)	395, 782, 1019
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	6 cut(s)	506, 759, 1080, 1196, 1242, 1365
DpnI	GATC	8 cut(s)	120, 209, 477, 868, 916, 1008, 1201, 1580
DpnII	GATC	8 cut(s)	118, 207, 475, 866, 914, 1006, 1199, 1578
EaeI	YGGCCR	2 cut(s)	202, 543
Eam1104I	CTCTTC	4 cut(s)	889, 1272, 1405, 1444
EarI	CTCTTC	4 cut(s)	889, 1272, 1405, 1444
Eco130I	CCWWGG	3 cut(s)	293, 479, 1536
Eco147I	AGGCCT	3 cut(s)	129, 994, 1386
Eco24I	GRGCYC	3 cut(s)	1250, 1269, 1284
Eco32I	GATATC	2 cut(s)	503, 654
Eco47I	GGWCC	1 cut(s)	1252
Eco57I	CTGAAG	1 cut(s)	1193
Eco72I	CACGTG	1 cut(s)	1052
EcoO109I	RGGNCCY	2 cut(s)	537, 1246
EcoRII	CCWGG	4 cut(s)	96, 151, 540, 1381
EcoRV	GATATC	2 cut(s)	503, 654
EcoT14I	CCWWGG	3 cut(s)	293, 479, 1536
EcoT38I	GRGCYC	3 cut(s)	1250, 1269, 1284
ErhI	CCWWGG	3 cut(s)	293, 479, 1536
FaeI	CATG	3 cut(s)	398, 785, 1022
FalI	AAGNNNNNCTT	6 cut(s)	162, 194, 1125, 1157, 1269, 1301
FatI	CATG	3 cut(s)	394, 781, 1018
FauNDI	CATATG	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	2 cut(s)	846, 849
FriOI	GRGCYC	3 cut(s)	1250, 1269, 1284
Fsp4HI	GCNGC	2 cut(s)	846, 849
FspBI	CTAG	3 cut(s)	719, 1235, 1377
GluI	GCNGC	2 cut(s)	846, 849
GsaI	CCCAGC	1 cut(s)	455
GsuI	CTGGAG	2 cut(s)	174, 302
HapII	CCGG	5 cut(s)	111, 795, 808, 1097, 1250
Hin1II	CATG	3 cut(s)	398, 785, 1022
HincII	GTYRAC	2 cut(s)	520, 924
HindII	GTYRAC	2 cut(s)	520, 924
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	9 cut(s)	385, 516, 527, 588, 710, 1082, 1340, 1523, 1532
HpaII	CCGG	5 cut(s)	111, 795, 808, 1097, 1250
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	4 cut(s)	520, 750, 862, 924
Hpy188I	TCNGA	7 cut(s)	259, 273, 326, 838, 1070, 1081, 1173
Hpy188III	TCNNGA	7 cut(s)	226, 382, 407, 585, 691, 1010, 1508
Hpy8I	GTNNAC	4 cut(s)	520, 750, 862, 924
HpyAV	CCTTC	8 cut(s)	41, 892, 1119, 1168, 1295, 1397, 1437, 1475
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	1051, 1348
HpyCH4V	TGCA	7 cut(s)	89, 785, 848, 982, 1016, 1035, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	804, 979
HpyF3I	CTNAG	6 cut(s)	506, 759, 1080, 1196, 1242, 1365
HpySE526I	ACGT	2 cut(s)	1051, 1348
Hsp92II	CATG	3 cut(s)	398, 785, 1022
Kzo9I	GATC	8 cut(s)	118, 207, 475, 866, 914, 1006, 1199, 1578
LguI	GCTCTTC	2 cut(s)	1272, 1444
LmnI	GCTCC	1 cut(s)	1264
Lsp1109I	GCAGC	2 cut(s)	832, 860
LweI	GCATC	6 cut(s)	14, 20, 807, 1003, 1135, 1247
MaeI	CTAG	3 cut(s)	719, 1235, 1377
MaeII	ACGT	2 cut(s)	1051, 1348
MaeIII	GTNAC	2 cut(s)	1045, 1349
MalI	GATC	8 cut(s)	120, 209, 477, 868, 916, 1008, 1201, 1580
MboI	GATC	8 cut(s)	118, 207, 475, 866, 914, 1006, 1199, 1578
MfeI	CAATTG	2 cut(s)	628, 1498
MflI	RGATCY	5 cut(s)	207, 475, 914, 1006, 1578
MhlI	GDGCHC	4 cut(s)	1250, 1269, 1284, 1507
MlsI	TGGCCA	2 cut(s)	204, 545
MluNI	TGGCCA	2 cut(s)	204, 545
MlyI	GAGTC	2 cut(s)	525, 1091
Mox20I	TGGCCA	2 cut(s)	204, 545
MscI	TGGCCA	2 cut(s)	204, 545
MseI	TTAA	4 cut(s)	72, 596, 686, 1293
Msp20I	TGGCCA	2 cut(s)	204, 545
MspA1I	CMGCKG	2 cut(s)	17, 1529
MspI	CCGG	5 cut(s)	111, 795, 808, 1097, 1250
MspR9I	CCNGG	6 cut(s)	98, 153, 542, 1097, 1250, 1383
MunI	CAATTG	2 cut(s)	628, 1498
MvaI	CCWGG	4 cut(s)	98, 153, 542, 1383
MwoI	GCNNNNNNNGC	2 cut(s)	804, 979
NciI	CCSGG	2 cut(s)	1097, 1250
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	8 cut(s)	118, 207, 475, 866, 914, 1006, 1199, 1578
NlaIII	CATG	3 cut(s)	398, 785, 1022
NlaIV	GGNNCC	7 cut(s)	150, 477, 539, 1008, 1248, 1254, 1266
NmuCI	GTSAC	1 cut(s)	1045
PceI	AGGCCT	3 cut(s)	129, 994, 1386
PciSI	GCTCTTC	2 cut(s)	1272, 1444
PfeI	GAWTC	7 cut(s)	385, 527, 588, 710, 1340, 1523, 1532
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	847, 850
PleI	GAGTC	2 cut(s)	524, 1090
PmaCI	CACGTG	1 cut(s)	1052
PmlI	CACGTG	1 cut(s)	1052
PpsI	GAGTC	2 cut(s)	524, 1090
Ppu21I	YACGTR	1 cut(s)	1052
PshBI	ATTAAT	1 cut(s)	686
Psp6I	CCWGG	4 cut(s)	96, 151, 540, 1381
PspCI	CACGTG	1 cut(s)	1052
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	4 cut(s)	96, 151, 540, 1381
PspN4I	GGNNCC	7 cut(s)	150, 477, 539, 1008, 1248, 1254, 1266
PspOMI	GGGCCC	1 cut(s)	1246
PspPI	GGNCC	6 cut(s)	537, 643, 1089, 1246, 1247, 1252
PstI	CTGCAG	1 cut(s)	850
PsuI	RGATCY	5 cut(s)	207, 475, 914, 1006, 1578
PvuII	CAGCTG	2 cut(s)	17, 1529
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	518
SapI	GCTCTTC	2 cut(s)	1272, 1444
SaqAI	TTAA	4 cut(s)	72, 596, 686, 1293
SatI	GCNGC	2 cut(s)	846, 849
Sau3AI	GATC	8 cut(s)	118, 207, 475, 866, 914, 1006, 1199, 1578
Sau96I	GGNCC	6 cut(s)	537, 643, 1089, 1246, 1247, 1252
SchI	GAGTC	2 cut(s)	525, 1091
ScrFI	CCNGG	6 cut(s)	98, 153, 542, 1097, 1250, 1383
SduI	GDGCHC	4 cut(s)	1250, 1269, 1284, 1507
SfaNI	GCATC	6 cut(s)	14, 20, 807, 1003, 1135, 1247
SfcI	CTRYAG	1 cut(s)	846
SinI	GGWCC	1 cut(s)	1252
SmlI	CTYRAG	2 cut(s)	224, 1506
SmoI	CTYRAG	2 cut(s)	224, 1506
SseBI	AGGCCT	3 cut(s)	129, 994, 1386
SspMI	CTAG	3 cut(s)	719, 1235, 1377
StuI	AGGCCT	3 cut(s)	129, 994, 1386
StyD4I	CCNGG	6 cut(s)	96, 151, 540, 1095, 1248, 1381
StyI	CCWWGG	3 cut(s)	293, 479, 1536
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	2 cut(s)	1054, 1351
TaqI	TCGA	3 cut(s)	370, 519, 525
TaqII	GACCGA	2 cut(s)	310, 1452
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	7 cut(s)	385, 527, 588, 710, 1340, 1523, 1532
Tru1I	TTAA	4 cut(s)	72, 596, 686, 1293
Tru9I	TTAA	4 cut(s)	72, 596, 686, 1293
TscAI	CASTG	2 cut(s)	774, 1342
TseFI	GTSAC	1 cut(s)	1045
TseI	GCWGC	2 cut(s)	845, 848
Tsp45I	GTSAC	1 cut(s)	1045
TspDTI	ATGAA	7 cut(s)	42, 60, 332, 369, 519, 541, 618
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	774, 1342
VpaK11BI	GGWCC	1 cut(s)	1252
VspI	ATTAAT	1 cut(s)	686
XapI	RAATTY	3 cut(s)	773, 826, 839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	3 cut(s)	719, 1235, 1377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.