Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011723

Physical Location & Seq

Genomic Coordinates Reverse (-)

18007805 .. 18008146

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTAACTGTTTTTTGCTGTGTATACCGGTGTCTAAATTAGGTGTAAAATCTGTGGAGGTGAACCGGAAACAAAGCCGGGTGATAGTGAGCGGGTATGTAGAACCGAACAAGGTGTTGAAGCGAGTAAAAAGCACAGGCAAGAAGAGAGCTGAGTTTTGGCCCTACATTGATCAACATCTAGTACGCTATCCCTACGCCTCTGGAGTATACGACTGGCGGGCACCAAAAGGCTATGTCCGGAATGTGGTTCAAGCTTTTCCGGCGTCTATAAATGCACCTGAGGAGAACATGGTCACCCTCTTCAGTGATGATAATGTCAATGCTTGTTCCATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

114

Amino Acids

12.81

Weight (kDa)

9.51

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17450 AT5G17450
malus_domestica	MD09G1260500.v1.1
prunus_persica	Prupe.3G152300_v2.0.a1
pyrus_communis	pycom09g17500
rosa_chinensis	RchiOBHm_Chr3g0491581 RchiOBHm_Chr3g0493561
rosa_laevigata	RLG00000022704
rosa_multiflora	Rmu_sc0000927.1_g000007
rosa_roxburghii	Rroxscaffold_6G00391480 Rroxscaffold_6G00392860
rosa_rugosa	Rorug03G0262200 Rorug03G0262300 Rorug03G0262400 Rorug03G0262500.1
rosa_samantha	Rh3AG311300 Rh3BG347200 Rh3CG345300 Rh3DG347500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccBSI	CCGCTC	1 cut(s)	93
AccI	GTMKAC	2 cut(s)	25, 210
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	2 cut(s)	93, 220
AcuI	CTGAAG	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	121, 254
AluBI	AGCT	2 cut(s)	152, 257
AluI	AGCT	2 cut(s)	152, 257
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	1 cut(s)	161
AsiGI	ACCGGT	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	73, 94, 289
AxyI	CCTNAGG	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	266
BsaWI	WCCGGW	3 cut(s)	28, 66, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	221
Bse21I	CCTNAGG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	144, 273
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	28
BsiSI	CCGG	5 cut(s)	29, 67, 79, 241, 263
BslI	CCNNNNNNNGG	1 cut(s)	247
BsnI	GGCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp13I	TCCGGA	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	2 cut(s)	93, 220
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	2 cut(s)	145, 274
BspEI	TCCGGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	1 cut(s)	172
BssNAI	GTATAC	2 cut(s)	26, 211
BssNI	GRCGYC	1 cut(s)	266
Bst1107I	GTATAC	2 cut(s)	26, 211
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	140, 308
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	153, 282
BstEII	GGTNACC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	226
BstZ17I	GTATAC	2 cut(s)	26, 211
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	185
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	5 cut(s)	78, 152, 163, 234, 257
CviKI_1	RGCY	5 cut(s)	78, 152, 163, 234, 257
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	2 cut(s)	153, 282
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	140, 308
EarI	CTCTTC	2 cut(s)	140, 308
Eco57I	CTGAAG	1 cut(s)	289
Eco81I	CCTNAGG	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	295
EcoO65I	GGTNACC	1 cut(s)	295
FaeI	CATG	1 cut(s)	295
FaiI	YATR	7 cut(s)	26, 99, 211, 237, 272, 293, 335
FatI	CATG	1 cut(s)	291
FauI	CCCGC	2 cut(s)	86, 213
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	2 cut(s)	25, 210
FspBI	CTAG	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	5 cut(s)	29, 67, 79, 241, 263
HgaI	GACGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	255
HpaII	CCGG	5 cut(s)	29, 67, 79, 241, 263
HphI	GGTGA	3 cut(s)	73, 94, 289
Hpy166II	GTNNAC	3 cut(s)	26, 64, 211
Hpy188III	TCNNGA	2 cut(s)	204, 241
Hpy8I	GTNNAC	3 cut(s)	26, 64, 211
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	153, 282
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	295
Kpn2I	TCCGGA	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	42, 80, 92, 123, 189, 202, 254, 276, 294
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	5, 295
MalI	GATC	1 cut(s)	174
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	157, 295
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	1 cut(s)	38
MnlI	CCTC	4 cut(s)	52, 211, 277, 311
MroI	TCCGGA	1 cut(s)	240
MspI	CCGG	5 cut(s)	29, 67, 79, 241, 263
MspR9I	CCNGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	263
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	295
PinAI	ACCGGT	1 cut(s)	28
PspEI	GGTNACC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	162
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	6 cut(s)	46, 63, 117, 154, 259, 283
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	93, 220
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	11
TasI	AATT	1 cut(s)	38
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspRI	CASTG	1 cut(s)	313
XmiI	GTMKAC	2 cut(s)	25, 210
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.