AT5G17640

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008694
Physical Location & Seq
Reverse (-)
5810935 .. 5813316
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17640.1

Sequence Viewer

Length: 1299 bp
ATGGATCCTCAAGCTTTCATTCGTCTTTCGGTTGGCTCTCTTGCTTTGAGAATTCCCAAGGTCCTTATAAACTCTACTTCAAAATCTAATGAGAAGAAGAACTTTTCTTCTCAATGCTCTTGCGAAATAAAACTACGAGGCTTTCCTGTTCAAACAACATCTATCCCTTTGATGCCGTCCCTTGATGCAGCTCCTGACCATCACAGTATTTCCACTAGCTTTTATCTTGAAGAATCTGATTTAAGAGCTCTTTTGACACCTGGATGCTTCTATAGTCCTCATGCTCACTTGGAAATCTCGGTTTTCACGGGTAAAAAGAGTTTGAATTGCGGTGTTGGTGGCAAAAGACAGCAGATTGGGATGTTTAAGTTGGAGGTAGGTCCTGAATGGGGAGAAGGAAAACCAATGATTCTTTTCAATGGTTGGATCAGTATTGGAAAGACCAAGCGGGATGGTGCTGCAGAGCTTCATTTGAAAGTGAAACTTGATCCTGATCCTCGATATGTTTTTCAGTTTGAGGATGTTACTACCTTGAGCCCTCAGATAGTTCAGCTCCGTGGCTCGGTCAAGCAACCTATCTTCAGTTGCAAGTTTAGCAGAGACAGGGTGTCACAGGTGGATCCGTTGAATGGGTACTGGTCAAGTTCAGGCGATGGAACTGAGCTTGAGAGTGAGAGACGTGAAAGAAAAGGATGGAAGGTGAAGATACATGATCTCTCTGGCTCTGCAGTTGCTGCTGCTTTCATAACAACTCCTTTTGTTCCATCCACTGGATGTGATTGGGTCGCAAAGTCCAACCCGGGTGCTTGGCTTGTGGTCCGGCCTGACCCATCTCGACCAAACAGCTGGCAGCCATGGGGAAAGCTCGAAGCTTGGCGGGAACGCGGGATCAGAGACTCCGTGTGTTGCAGATTCCATCTTCTATCAAACGGTCTAGAAGTTGGAGATGTTTTAATGTCTGAAATCCTCATCAGCGCTGAGAAAGGTGGGGAATTTTTAATCGACACGGATAAACAGATGCTAACAGTTGCAGCTACACCAATTCCAAGCCCGCAGAGTAGTGGAGACTTCTCAGGGTTGGGACAGTGTGTCTCTGGAGGTGGGTTTGTAATGAGCTCGAGAGTGCAAGGGGAAGGGAAAAGCAGCAAGCCCGTTGTACAATTAGCTATGAGACATGTAACTTGTGTGGAAGATGCAGCCATTTTCATGGCACTTGCTGCAGCTGTTGATCTTAGCATTCTTGCTTGTAAACCTTTTAGGAGAACGAGTCGGAGAAGGTTCCGGCATTACTCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

432

Amino Acids

47.58

Weight (kDa)

9.05

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 1 - 428 8.6e-183 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 68
AccB7I CCANNNNNTGG 1 cut(s) 770
AccII CGCG 1 cut(s) 885
AciI CCGC 5 cut(s) 330, 448, 877, 885, 1052
AclWI GGATC 7 cut(s) 12, 434, 482, 488, 614, 627, 896
AcsI RAATTY 2 cut(s) 51, 992
AcuI CTGAAG 1 cut(s) 565
AfaI GTAC 2 cut(s) 635, 1158
AfeI AGCGCT 1 cut(s) 976
AfiI CCNNNNNNNGG 4 cut(s) 389, 562, 629, 770
AflIII ACRYGT 1 cut(s) 1174
AgsI TTSAA 7 cut(s) 81, 152, 230, 325, 418, 475, 628
AhdI GACNNNNNGTC 2 cut(s) 607, 1088
AjiI CACGTC 1 cut(s) 680
AjnI CCWGG 2 cut(s) 259, 1292
Alw21I GWGCWC 2 cut(s) 250, 1118
Alw26I GTCTC 6 cut(s) 594, 670, 888, 1059, 1096, 1165
AlwI GGATC 7 cut(s) 12, 434, 482, 488, 614, 627, 896
AlwNI CAGNNNCTG 2 cut(s) 194, 734
Ama87I CYCGRG 2 cut(s) 799, 1117
Aor51HI AGCGCT 1 cut(s) 976
AoxI GGCC 1 cut(s) 821
ApoI RAATTY 2 cut(s) 51, 992
AspLEI GCGC 1 cut(s) 977
AspS9I GGNCC 3 cut(s) 61, 380, 817
AsuC2I CCSGG 2 cut(s) 800, 801
AsuHPI GGTGA 1 cut(s) 712
AvaI CYCGRG 2 cut(s) 799, 1117
AvaII GGWCC 3 cut(s) 61, 380, 817
BamHI GGATCC 2 cut(s) 4, 619
BanII GRGCYC 3 cut(s) 250, 539, 1118
Bbv12I GWGCWC 2 cut(s) 250, 1118
BccI CCATC 7 cut(s) 207, 446, 647, 687, 772, 838, 924
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 2 cut(s) 261, 1294
BcnI CCSGG 2 cut(s) 800, 801
BcoDI GTCTC 6 cut(s) 594, 670, 888, 1059, 1096, 1165
BfaI CTAG 2 cut(s) 216, 935
BfmI CTRYAG 4 cut(s) 271, 459, 726, 1218
BfoI RGCGCY 1 cut(s) 978
Bme1390I CCNGG 4 cut(s) 261, 800, 801, 1294
Bme18I GGWCC 3 cut(s) 61, 380, 817
BmeRI GACNNNNNGTC 2 cut(s) 607, 1088
BmeT110I CYCGRG 2 cut(s) 799, 1117
BmgBI CACGTC 1 cut(s) 680
BmgT120I GGNCC 3 cut(s) 61, 380, 817
BmiI GGNNCC 3 cut(s) 6, 621, 1280
BmrFI CCNGG 4 cut(s) 261, 800, 801, 1294
BmsI GCATC 5 cut(s) 162, 175, 254, 1008, 1183
BpmI CTGGAG 1 cut(s) 1116
BpuEI CTTGAG 2 cut(s) 553, 686
BpuMI CCSGG 2 cut(s) 800, 801
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 4 cut(s) 57, 556, 799, 854
BsaXI ACNNNNNCTCC 2 cut(s) 1252, 1282
Bsc4I CCNNNNNNNGG 4 cut(s) 389, 562, 629, 770
Bse1I ACTGG 2 cut(s) 641, 775
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 2 cut(s) 261, 1294
BseDI CCNNGG 4 cut(s) 57, 556, 799, 854
BseGI GGATG 7 cut(s) 269, 366, 457, 526, 698, 764, 779
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 4 cut(s) 389, 562, 629, 770
BseMII CTCAG 4 cut(s) 554, 651, 969, 1086
BseNI ACTGG 2 cut(s) 641, 775
Bsh1236I CGCG 1 cut(s) 885
BshFI GGCC 1 cut(s) 823
BsiHKAI GWGCWC 2 cut(s) 250, 1118
BsiHKCI CYCGRG 2 cut(s) 799, 1117
BsiSI CCGG 3 cut(s) 800, 820, 1282
BslFI GGGAC 2 cut(s) 163, 1095
BslI CCNNNNNNNGG 4 cut(s) 389, 562, 629, 770
BsmAI GTCTC 6 cut(s) 594, 670, 888, 1059, 1096, 1165
BsmBI CGTCTC 1 cut(s) 670
BsmFI GGGAC 2 cut(s) 163, 1095
BsmI GAATGC 1 cut(s) 1236
BsnI GGCC 1 cut(s) 823
BsoBI CYCGRG 2 cut(s) 799, 1117
Bsp1286I GDGCHC 3 cut(s) 250, 539, 1118
Bsp1407I TGTACA 1 cut(s) 1156
Bsp143I GATC 8 cut(s) 4, 426, 487, 493, 619, 712, 888, 1228
Bsp19I CCATGG 1 cut(s) 854
BspACI CCGC 5 cut(s) 330, 448, 877, 885, 1052
BspANI GGCC 1 cut(s) 823
BspCNI CTCAG 4 cut(s) 553, 652, 970, 1085
BspFNI CGCG 1 cut(s) 885
BspLI GGNNCC 3 cut(s) 6, 621, 1280
BspMAI CTGCAG 3 cut(s) 463, 730, 1222
BspPI GGATC 7 cut(s) 12, 434, 482, 488, 614, 627, 896
BsrGI TGTACA 1 cut(s) 1156
BsrI ACTGG 2 cut(s) 641, 775
BssECI CCNNGG 4 cut(s) 57, 556, 799, 854
BssMI GATC 8 cut(s) 4, 426, 487, 493, 619, 712, 888, 1228
BssT1I CCWWGG 2 cut(s) 57, 854
Bst2UI CCWGG 2 cut(s) 261, 1294
Bst4CI ACNGT 4 cut(s) 206, 932, 1027, 1086
BstAPI GCANNNNNTGC 2 cut(s) 734, 1217
BstAUI TGTACA 1 cut(s) 1156
BstC8I GCNNGC 3 cut(s) 848, 1052, 1148
BstDEI CTNAG 5 cut(s) 540, 660, 978, 1072, 1232
BstDSI CCRYGG 2 cut(s) 556, 854
BstF5I GGATG 7 cut(s) 269, 366, 457, 526, 698, 764, 779
BstFNI CGCG 1 cut(s) 885
BstH2I RGCGCY 1 cut(s) 978
BstHHI GCGC 1 cut(s) 977
BstKTI GATC 8 cut(s) 7, 429, 490, 496, 622, 715, 891, 1231
BstMAI GTCTC 6 cut(s) 594, 670, 888, 1059, 1096, 1165
BstMBI GATC 8 cut(s) 4, 426, 487, 493, 619, 712, 888, 1228
BstMWI GCNNNNNNNGC 3 cut(s) 594, 734, 1217
BstNI CCWGG 2 cut(s) 261, 1294
BstNSI RCATGY 1 cut(s) 1178
BstSCI CCNGG 4 cut(s) 259, 798, 799, 1292
BstSFI CTRYAG 4 cut(s) 271, 459, 726, 1218
BstUI CGCG 1 cut(s) 885
BstX2I RGATCY 2 cut(s) 4, 619
BstXI CCANNNNNNTGG 2 cut(s) 846, 1207
BstYI RGATCY 2 cut(s) 4, 619
BsuRI GGCC 1 cut(s) 823
BtgI CCRYGG 2 cut(s) 556, 854
BtgZI GCGATG 1 cut(s) 666
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 7 cut(s) 269, 366, 457, 526, 698, 764, 779
BtsIMutI CAGTG 2 cut(s) 768, 1091
Cac8I GCNNGC 3 cut(s) 848, 1052, 1148
CaiI CAGNNNCTG 2 cut(s) 194, 734
CfoI GCGC 1 cut(s) 977
Cfr13I GGNCC 3 cut(s) 61, 380, 817
Cfr9I CCCGGG 1 cut(s) 799
Csp6I GTAC 2 cut(s) 634, 1157
CviAII CATG 5 cut(s) 281, 710, 855, 1175, 1207
CviQI GTAC 2 cut(s) 634, 1157
DdeI CTNAG 5 cut(s) 540, 660, 978, 1072, 1232
DpnI GATC 8 cut(s) 6, 428, 489, 495, 621, 714, 890, 1230
DpnII GATC 8 cut(s) 4, 426, 487, 493, 619, 712, 888, 1228
DriI GACNNNNNGTC 2 cut(s) 607, 1088
Eam1105I GACNNNNNGTC 2 cut(s) 607, 1088
Ecl136II GAGCTC 2 cut(s) 248, 1116
Eco130I CCWWGG 2 cut(s) 57, 854
Eco24I GRGCYC 3 cut(s) 250, 539, 1118
Eco47I GGWCC 3 cut(s) 61, 380, 817
Eco47III AGCGCT 1 cut(s) 976
Eco53kI GAGCTC 2 cut(s) 248, 1116
Eco57I CTGAAG 1 cut(s) 565
Eco88I CYCGRG 2 cut(s) 799, 1117
EcoICRI GAGCTC 2 cut(s) 248, 1116
EcoO109I RGGNCCY 2 cut(s) 61, 380
EcoRI GAATTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 259, 1292
EcoT14I CCWWGG 2 cut(s) 57, 854
EcoT38I GRGCYC 3 cut(s) 250, 539, 1118
ErhI CCWWGG 2 cut(s) 57, 854
Esp3I CGTCTC 1 cut(s) 670
FaeI CATG 5 cut(s) 284, 713, 858, 1178, 1210
FalI AAGNNNNNCTT 4 cut(s) 86, 118, 468, 500
FaqI GGGAC 2 cut(s) 163, 1095
FatI CATG 5 cut(s) 280, 709, 854, 1174, 1206
FauI CCCGC 4 cut(s) 441, 870, 878, 1059
FokI GGATG 7 cut(s) 276, 373, 464, 533, 705, 751, 786
FriOI GRGCYC 3 cut(s) 250, 539, 1118
FspBI CTAG 2 cut(s) 216, 935
GlaI GCGC 1 cut(s) 976
GsuI CTGGAG 1 cut(s) 1116
HaeII RGCGCY 1 cut(s) 978
HaeIII GGCC 1 cut(s) 823
HapII CCGG 3 cut(s) 800, 820, 1282
HhaI GCGC 1 cut(s) 977
Hin1II CATG 5 cut(s) 284, 713, 858, 1178, 1210
Hin6I GCGC 1 cut(s) 975
HinP1I GCGC 1 cut(s) 975
HindIII AAGCTT 2 cut(s) 12, 870
HinfI GANTC 5 cut(s) 233, 409, 896, 912, 1267
HpaII CCGG 3 cut(s) 800, 820, 1282
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 1 cut(s) 1250
Hpy188I TCNGA 5 cut(s) 238, 543, 893, 961, 1272
Hpy188III TCNNGA 8 cut(s) 194, 227, 383, 491, 834, 935, 1095, 1119
Hpy8I GTNNAC 1 cut(s) 1250
HpyAV CCTTC 4 cut(s) 389, 691, 1127, 1269
HpyCH4III ACNGT 4 cut(s) 206, 932, 1027, 1086
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 9 cut(s) 188, 461, 588, 728, 909, 1031, 1126, 1196, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 594, 734, 1217
HpyF3I CTNAG 5 cut(s) 540, 660, 978, 1072, 1232
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 5 cut(s) 284, 713, 858, 1178, 1210
HspAI GCGC 1 cut(s) 975
Kzo9I GATC 8 cut(s) 4, 426, 487, 493, 619, 712, 888, 1228
LmnI GCTCC 2 cut(s) 196, 558
LweI GCATC 5 cut(s) 162, 175, 254, 1008, 1183
MaeI CTAG 2 cut(s) 216, 935
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 3 cut(s) 523, 609, 1177
MalI GATC 8 cut(s) 6, 428, 489, 495, 621, 714, 890, 1230
MboI GATC 8 cut(s) 4, 426, 487, 493, 619, 712, 888, 1228
MboII GAAGA 8 cut(s) 99, 106, 109, 242, 571, 715, 911, 1202
MflI RGATCY 2 cut(s) 4, 619
MhlI GDGCHC 3 cut(s) 250, 539, 1118
MluCI AATT 5 cut(s) 51, 325, 992, 1041, 1160
MlyI GAGTC 2 cut(s) 890, 1276
MmeI TCCRAC 5 cut(s) 351, 404, 819, 922, 1250
MnlI CCTC 9 cut(s) 18, 131, 288, 367, 507, 511, 549, 977, 1091
MseI TTAA 4 cut(s) 242, 366, 953, 998
MslI CAYNNNNRTG 2 cut(s) 262, 1205
MspA1I CMGCKG 2 cut(s) 846, 1223
MspI CCGG 3 cut(s) 800, 820, 1282
MspR9I CCNGG 4 cut(s) 261, 800, 801, 1294
Mva1269I GAATGC 1 cut(s) 1236
MvaI CCWGG 2 cut(s) 261, 1294
MvnI CGCG 1 cut(s) 885
MwoI GCNNNNNNNGC 3 cut(s) 594, 734, 1217
NciI CCSGG 2 cut(s) 800, 801
NcoI CCATGG 1 cut(s) 854
NdeII GATC 8 cut(s) 4, 426, 487, 493, 619, 712, 888, 1228
NlaIII CATG 5 cut(s) 284, 713, 858, 1178, 1210
NlaIV GGNNCC 3 cut(s) 6, 621, 1280
NmuCI GTSAC 1 cut(s) 609
NspI RCATGY 1 cut(s) 1178
PaeR7I CTCGAG 1 cut(s) 1117
PciI ACATGT 1 cut(s) 1174
PctI GAATGC 1 cut(s) 1236
PfeI GAWTC 3 cut(s) 233, 409, 912
PflMI CCANNNNNTGG 1 cut(s) 770
PleI GAGTC 2 cut(s) 890, 1275
PpsI GAGTC 2 cut(s) 890, 1275
PpuMI RGGWCCY 2 cut(s) 61, 380
PscI ACATGT 1 cut(s) 1174
PsiI TTATAA 1 cut(s) 68
Psp124BI GAGCTC 2 cut(s) 250, 1118
Psp5II RGGWCCY 2 cut(s) 61, 380
Psp6I CCWGG 2 cut(s) 259, 1292
PspGI CCWGG 2 cut(s) 259, 1292
PspN4I GGNNCC 3 cut(s) 6, 621, 1280
PspPI GGNCC 3 cut(s) 61, 380, 817
PspPPI RGGWCCY 2 cut(s) 61, 380
PstI CTGCAG 3 cut(s) 463, 730, 1222
PstNI CAGNNNCTG 2 cut(s) 194, 734
PsuI RGATCY 2 cut(s) 4, 619
PvuII CAGCTG 2 cut(s) 846, 1223
RsaI GTAC 2 cut(s) 635, 1158
RsaNI GTAC 2 cut(s) 634, 1157
RseI CAYNNNNRTG 2 cut(s) 262, 1205
SacI GAGCTC 2 cut(s) 250, 1118
SaqAI TTAA 4 cut(s) 242, 366, 953, 998
Sau3AI GATC 8 cut(s) 4, 426, 487, 493, 619, 712, 888, 1228
Sau96I GGNCC 3 cut(s) 61, 380, 817
SchI GAGTC 2 cut(s) 890, 1276
ScrFI CCNGG 4 cut(s) 261, 800, 801, 1294
SduI GDGCHC 3 cut(s) 250, 539, 1118
SfaNI GCATC 5 cut(s) 162, 175, 254, 1008, 1183
SfcI CTRYAG 4 cut(s) 271, 459, 726, 1218
Sfr274I CTCGAG 1 cut(s) 1117
SinI GGWCC 3 cut(s) 61, 380, 817
SlaI CTCGAG 1 cut(s) 1117
SmaI CCCGGG 1 cut(s) 801
SmiMI CAYNNNNRTG 2 cut(s) 262, 1205
SmlI CTYRAG 4 cut(s) 9, 532, 665, 1117
SmoI CTYRAG 4 cut(s) 9, 532, 665, 1117
Sse9I AATT 5 cut(s) 51, 325, 992, 1041, 1160
SsiI CCGC 5 cut(s) 330, 448, 877, 885, 1052
SspMI CTAG 2 cut(s) 216, 935
SstI GAGCTC 2 cut(s) 250, 1118
StyD4I CCNGG 4 cut(s) 259, 798, 799, 1292
StyI CCWWGG 2 cut(s) 57, 854
TaaI ACNGT 4 cut(s) 206, 932, 1027, 1086
TaiI ACGT 1 cut(s) 682
TaqI TCGA 5 cut(s) 499, 835, 867, 1002, 1118
TaqII GACCGA 1 cut(s) 553
TasI AATT 5 cut(s) 51, 325, 992, 1041, 1160
TatI WGTACW 1 cut(s) 1156
TfiI GAWTC 3 cut(s) 233, 409, 912
Tru1I TTAA 4 cut(s) 242, 366, 953, 998
Tru9I TTAA 4 cut(s) 242, 366, 953, 998
TscAI CASTG 2 cut(s) 775, 1091
TseFI GTSAC 1 cut(s) 609
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 4 cut(s) 7, 458, 733, 1195
TspGWI ACGGA 4 cut(s) 545, 612, 889, 1022
TspMI CCCGGG 1 cut(s) 799
TspRI CASTG 2 cut(s) 775, 1091
Van91I CCANNNNNTGG 1 cut(s) 770
VpaK11BI GGWCC 3 cut(s) 61, 380, 817
XapI RAATTY 2 cut(s) 51, 992
XbaI TCTAGA 1 cut(s) 934
XceI RCATGY 1 cut(s) 1178
XhoI CTCGAG 1 cut(s) 1117
XmaI CCCGGG 1 cut(s) 799
XspI CTAG 2 cut(s) 216, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.