Rh1DG170900

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008694
Physical Location & Seq
Reverse (-)
35227261 .. 35231470
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG170900.1

Sequence Viewer

Length: 1302 bp
ATGGATCCTCAGGCTTTTATTAGGTTGTCAATAGGCTCACTGGGATTGAGGATTCCTGGAACAGCTTTGAAATCTGAAAAGTCTGGGATTCATGCATTCTCTTCTCCATGTTTGTGTGAAATTCGCCTTCGGGGATTCCCTGTGCAGACAGTATCAGTCCCCTTACTATCATCTCCTGAAGCTGCACCTGATACTCATAGCATAGCCTCAAGTTTTTATCTTGAACATTCAGATGTCAAAGCGATGCTGGTACCTGGCTGTTTCTTCAACCCACATGCGTGTCTGGAGATTGCTGTTTTTACAGGGAGGAAAGGATCCCATTGTGGCGTAGGGGTCAAAAGGCAGCAAATTGGGACATTTAAGCTGGAGGTTGGTCCTGAATGGGGAGCAGGAAAGCCAGTTGTCCTTTTCAGTGGGTGGATTGGTATTGGCAAAAACAAGCAGGAGAGTGGAAAACTGAGTGTGGAGCTTCATTTGAGAGTAAGACTTGATCCTGATCCAAGATATGTTTTCCAGTTTGATGATATGACAAGACTAAGTCCGCAGATTGTTCAGCTTCAAGGTTCCAATAAGCAGCCTATTTTCAGCTGCAGGTTTAGCCGAGACAGGGTTCCCCAGGTGGATCCACTGAGCAATTACTGGTCAGGTTCTGTGGATGATTCTAATCTTGAGACAGAAAGGAGAGAGAGAAAAGGATGGAAGGTGACGATACATGATCTTTCTGGCTCTGCTGTTGCAGCAGCCTTTATAACCACTCCATTTGTGCCATCAACAGGTTGTGATTGGGTTGCAAGATCAAATCCAGGAGCTTGGTTGATTGTTAGTCCTGATCCTTGCAGGCCTGAGAGCTGGCAGCCATGGGCAAAGCTTGAGGCATGGCGGGAGCGTGGTAGCATCAGAGACTCTGTTTGCTGCCGAATTCGCCTTTTGTCTGAATGCCAGGAAGCAGCAGAGCTTCTCATGTCTGAAATCCACATCAATGCTGAAAAGGGTGGTGAGTTTTTCATCGACACCGACAGACAGATGCAAGCAGCTGCAGCAGCAGCCCCTCCGCTACCAAGTCCACAAAGCAGTGGAGACTATGCGGCTTTGGGTCCAGTTGTAGGTGGTTTTGTCATGAGCTGTAGAGTACAAGGACAAGGAAAAAGCAGCAAGCCATTAGTACAACTAGCAATGAGGCATGTGACATGTGTTGAAGACGCTGCCATCTTCATGGCTCTTGCAGCAGCTGCGGATCTCAGCATTGAGGCATGTAGGCCTTTCCGTCGGAAGATCAGAAAACCATCCTGCCCTTCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

433

Amino Acids

47.32

Weight (kDa)

8.59

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 1 - 428 2.3e-179 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
Acc36I ACCTGC 1 cut(s) 582
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 250
AciI CCGC 5 cut(s) 542, 880, 1052, 1085, 1232
AclWI GGATC 9 cut(s) 12, 309, 322, 485, 491, 617, 630, 824, 1242
AcsI RAATTY 2 cut(s) 120, 918
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 3 cut(s) 252, 1131, 1164
AfiI CCNNNNNNNGG 4 cut(s) 383, 607, 773, 1103
AflIII ACRYGT 1 cut(s) 1187
AgsI TTSAA 5 cut(s) 70, 224, 268, 560, 1196
AjnI CCWGG 5 cut(s) 55, 253, 615, 802, 939
AleI CACNNNNGTG 1 cut(s) 277
Alw26I GTCTC 4 cut(s) 597, 665, 894, 1071
AlwI GGATC 9 cut(s) 12, 309, 322, 485, 491, 617, 630, 824, 1242
AlwNI CAGNNNCTG 2 cut(s) 650, 1229
AoxI GGCC 2 cut(s) 839, 1256
ApoI RAATTY 2 cut(s) 120, 918
Asp718I GGTACC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 374, 1094
AsuHPI GGTGA 2 cut(s) 715, 1007
AvaII GGWCC 2 cut(s) 374, 1094
AxyI CCTNAGG 1 cut(s) 9
BamHI GGATCC 3 cut(s) 4, 314, 622
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 1203
BccI CCATC 4 cut(s) 690, 775, 1214, 1291
BciT130I CCWGG 5 cut(s) 57, 255, 617, 804, 941
BcoDI GTCTC 4 cut(s) 597, 665, 894, 1071
BfaI CTAG 1 cut(s) 1169
BfmI CTRYAG 3 cut(s) 589, 1035, 1123
BfuAI ACCTGC 1 cut(s) 582
Bme1390I CCNGG 5 cut(s) 57, 255, 617, 804, 941
Bme18I GGWCC 2 cut(s) 374, 1094
BmgT120I GGNCC 2 cut(s) 374, 1094
BmiI GGNNCC 7 cut(s) 6, 252, 316, 565, 612, 624, 1095
BmrFI CCNGG 5 cut(s) 57, 255, 617, 804, 941
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 234, 903, 1014
BmuI ACTGGG 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 1203
BpmI CTGGAG 2 cut(s) 305, 386
BpuEI CTTGAG 3 cut(s) 193, 689, 890
BsaBI GATNNNNATC 2 cut(s) 495, 663
BsaJI CCNNGG 2 cut(s) 615, 857
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 607, 773, 1103
Bse1I ACTGG 5 cut(s) 45, 398, 514, 644, 1097
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 1179
Bse8I GATNNNNATC 2 cut(s) 495, 663
BseBI CCWGG 5 cut(s) 57, 255, 617, 804, 941
BseDI CCNNGG 2 cut(s) 615, 857
BseGI GGATG 3 cut(s) 661, 701, 1283
BseJI GATNNNNATC 2 cut(s) 495, 663
BseLI CCNNNNNNNGG 4 cut(s) 383, 607, 773, 1103
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 5 cut(s) 23, 449, 620, 834, 1252
BseNI ACTGG 5 cut(s) 45, 398, 514, 644, 1097
BsgI GTGCAG 2 cut(s) 164, 168
BshFI GGCC 2 cut(s) 841, 1258
BshNI GGYRCC 1 cut(s) 250
BslFI GGGAC 2 cut(s) 143, 367
BslI CCNNNNNNNGG 4 cut(s) 383, 607, 773, 1103
BsmAI GTCTC 4 cut(s) 597, 665, 894, 1071
BsmFI GGGAC 2 cut(s) 143, 367
BsmI GAATGC 2 cut(s) 95, 941
BsnI GGCC 2 cut(s) 841, 1258
Bsp19I CCATGG 1 cut(s) 857
BspACI CCGC 5 cut(s) 542, 880, 1052, 1085, 1232
BspANI GGCC 2 cut(s) 841, 1258
BspCNI CTCAG 5 cut(s) 22, 450, 621, 835, 1251
BspHI TCATGA 1 cut(s) 1116
BspLI GGNNCC 7 cut(s) 6, 252, 316, 565, 612, 624, 1095
BspMAI CTGCAG 2 cut(s) 593, 1039
BspMI ACCTGC 1 cut(s) 582
BspPI GGATC 9 cut(s) 12, 309, 322, 485, 491, 617, 630, 824, 1242
BspT107I GGYRCC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 1179
BsrI ACTGG 5 cut(s) 45, 398, 514, 644, 1097
BssECI CCNNGG 2 cut(s) 615, 857
BssT1I CCWWGG 1 cut(s) 857
Bst2UI CCWGG 5 cut(s) 57, 255, 617, 804, 941
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstC8I GCNNGC 4 cut(s) 839, 851, 1029, 1154
BstDEI CTNAG 6 cut(s) 9, 458, 536, 629, 843, 1238
BstDSI CCRYGG 1 cut(s) 857
BstF5I GGATG 3 cut(s) 661, 701, 1283
BstMAI GTCTC 4 cut(s) 597, 665, 894, 1071
BstMWI GCNNNNNNNGC 8 cut(s) 597, 737, 921, 1037, 1040, 1043, 1223, 1229
BstNI CCWGG 5 cut(s) 57, 255, 617, 804, 941
BstNSI RCATGY 4 cut(s) 278, 1184, 1191, 1254
BstSCI CCNGG 5 cut(s) 55, 253, 615, 802, 939
BstSFI CTRYAG 3 cut(s) 589, 1035, 1123
BstV2I GAAGAC 1 cut(s) 1203
BstX2I RGATCY 4 cut(s) 4, 314, 622, 1234
BstXI CCANNNNNNTGG 2 cut(s) 810, 1213
BstYI RGATCY 4 cut(s) 4, 314, 622, 1234
Bsu36I CCTNAGG 1 cut(s) 9
BsuRI GGCC 2 cut(s) 841, 1258
BtgI CCRYGG 1 cut(s) 857
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 3 cut(s) 661, 701, 1283
BtsI GCAGTG 1 cut(s) 1078
BtsIMutI CAGTG 4 cut(s) 38, 418, 626, 1078
BveI ACCTGC 1 cut(s) 582
Cac8I GCNNGC 4 cut(s) 839, 851, 1029, 1154
CaiI CAGNNNCTG 2 cut(s) 650, 1229
CciI TCATGA 1 cut(s) 1116
Cfr13I GGNCC 2 cut(s) 374, 1094
CseI GACGC 1 cut(s) 1208
Csp6I GTAC 3 cut(s) 251, 1130, 1163
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviQI GTAC 3 cut(s) 251, 1130, 1163
DdeI CTNAG 6 cut(s) 9, 458, 536, 629, 843, 1238
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 857
Eco147I AGGCCT 2 cut(s) 841, 1258
Eco47I GGWCC 2 cut(s) 374, 1094
Eco57I CTGAAG 1 cut(s) 198
Eco81I CCTNAGG 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 918
EcoRII CCWGG 5 cut(s) 55, 253, 615, 802, 939
EcoT14I CCWWGG 1 cut(s) 857
EcoT22I ATGCAT 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 857
FaqI GGGAC 2 cut(s) 143, 367
FauI CCCGC 1 cut(s) 873
FokI GGATG 3 cut(s) 668, 708, 1270
FspBI CTAG 1 cut(s) 1169
GsuI CTGGAG 2 cut(s) 305, 386
HaeIII GGCC 2 cut(s) 841, 1258
HgaI GACGC 1 cut(s) 1208
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 5 cut(s) 52, 88, 135, 659, 902
HphI GGTGA 2 cut(s) 715, 1007
Hpy166II GTNNAC 1 cut(s) 1064
Hpy188I TCNGA 7 cut(s) 76, 232, 899, 934, 967, 1269, 1277
Hpy188III TCNNGA 8 cut(s) 176, 221, 284, 377, 494, 668, 827, 1117
Hpy8I GTNNAC 1 cut(s) 1064
Hpy99I CGWCG 1 cut(s) 1269
HpyAV CCTTC 3 cut(s) 137, 694, 1302
HpyCH4III ACNGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 8 cut(s) 597, 737, 921, 1037, 1040, 1043, 1223, 1229
HpyF3I CTNAG 6 cut(s) 9, 458, 536, 629, 843, 1238
KpnI GGTACC 1 cut(s) 254
LmnI GCTCC 4 cut(s) 386, 466, 806, 883
LweI GCATC 3 cut(s) 234, 903, 1014
MaeI CTAG 1 cut(s) 1169
MaeIII GTNAC 2 cut(s) 703, 1183
MboII GAAGA 5 cut(s) 93, 256, 1201, 1208, 1282
MflI RGATCY 4 cut(s) 4, 314, 622, 1234
MluCI AATT 4 cut(s) 120, 348, 634, 918
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 1 cut(s) 1247
MnlI CCTC 9 cut(s) 18, 42, 217, 300, 361, 865, 1059, 1170, 1240
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 5 cut(s) 112, 231, 277, 978, 1211
MspA1I CMGCKG 3 cut(s) 588, 1034, 1229
MspR9I CCNGG 5 cut(s) 57, 255, 617, 804, 941
Mva1269I GAATGC 2 cut(s) 95, 941
MvaI CCWGG 5 cut(s) 57, 255, 617, 804, 941
MwoI GCNNNNNNNGC 8 cut(s) 597, 737, 921, 1037, 1040, 1043, 1223, 1229
NcoI CCATGG 1 cut(s) 857
NlaIV GGNNCC 7 cut(s) 6, 252, 316, 565, 612, 624, 1095
NmeAIII GCCGAG 1 cut(s) 626
NmuCI GTSAC 2 cut(s) 703, 1183
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 4 cut(s) 278, 1184, 1191, 1254
OliI CACNNNNGTG 1 cut(s) 277
PagI TCATGA 1 cut(s) 1116
PceI AGGCCT 2 cut(s) 841, 1258
PciI ACATGT 1 cut(s) 1187
PctI GAATGC 2 cut(s) 95, 941
PfeI GAWTC 4 cut(s) 52, 88, 135, 659
PflFI GACNNNGTC 1 cut(s) 537
PfoI TCCNGGA 2 cut(s) 55, 802
PleI GAGTC 1 cut(s) 896
PpsI GAGTC 1 cut(s) 896
PscI ACATGT 1 cut(s) 1187
PsiI TTATAA 1 cut(s) 749
Psp6I CCWGG 5 cut(s) 55, 253, 615, 802, 939
PspGI CCWGG 5 cut(s) 55, 253, 615, 802, 939
PspN4I GGNNCC 7 cut(s) 6, 252, 316, 565, 612, 624, 1095
PspPI GGNCC 2 cut(s) 374, 1094
PstI CTGCAG 2 cut(s) 593, 1039
PstNI CAGNNNCTG 2 cut(s) 650, 1229
PsuI RGATCY 4 cut(s) 4, 314, 622, 1234
PsyI GACNNNGTC 1 cut(s) 537
PvuII CAGCTG 3 cut(s) 588, 1034, 1229
RsaI GTAC 3 cut(s) 252, 1131, 1164
RsaNI GTAC 3 cut(s) 251, 1130, 1163
RseI CAYNNNNRTG 5 cut(s) 112, 231, 277, 978, 1211
SaqAI TTAA 1 cut(s) 360
Sau96I GGNCC 2 cut(s) 374, 1094
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 5 cut(s) 57, 255, 617, 804, 941
SfaNI GCATC 3 cut(s) 234, 903, 1014
SfcI CTRYAG 3 cut(s) 589, 1035, 1123
SinI GGWCC 2 cut(s) 374, 1094
SmiMI CAYNNNNRTG 5 cut(s) 112, 231, 277, 978, 1211
SmlI CTYRAG 3 cut(s) 208, 668, 869
SmoI CTYRAG 3 cut(s) 208, 668, 869
Sse9I AATT 4 cut(s) 120, 348, 634, 918
SseBI AGGCCT 2 cut(s) 841, 1258
SsiI CCGC 5 cut(s) 542, 880, 1052, 1085, 1232
SspMI CTAG 1 cut(s) 1169
StuI AGGCCT 2 cut(s) 841, 1258
StyD4I CCNGG 5 cut(s) 55, 253, 615, 802, 939
StyI CCWWGG 1 cut(s) 857
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 1008
TasI AATT 4 cut(s) 120, 348, 634, 918
TatI WGTACW 2 cut(s) 1129, 1162
TauI GCSGC 1 cut(s) 1088
TfiI GAWTC 4 cut(s) 52, 88, 135, 659
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 4 cut(s) 45, 418, 633, 1078
TseFI GTSAC 2 cut(s) 703, 1183
Tsp45I GTSAC 2 cut(s) 703, 1183
TspDTI ATGAA 4 cut(s) 80, 461, 994, 1201
TspGWI ACGGA 1 cut(s) 1253
TspRI CASTG 4 cut(s) 45, 418, 633, 1078
Tth111I GACNNNGTC 1 cut(s) 537
VpaK11BI GGWCC 2 cut(s) 374, 1094
XapI RAATTY 2 cut(s) 120, 918
XceI RCATGY 4 cut(s) 278, 1184, 1191, 1254
XspI CTAG 1 cut(s) 1169
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.