Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008694

Physical Location & Seq

Genomic Coordinates Reverse (-)

5744426 .. 5746305

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGATCCTCAGGCTTTTATTAGGTTGTCAATAGGCTCACTTGGACTAAGGATTCCTGGAACACCTTTAAACTCTGAAAAATCTGGTATCCATGCATTCTCTTCCCCATATTCATGTGAAATTCGCCTTCGAGGATTCCCTATGCAGACAGCATCAATTCCCTTAGTATCTTCTCCTGAAGCTGCTACACGTGATTCTCATAGCACTGCCTCCAGTTTTTATCTTGAAGAATCTGATATTAAAGCACTGCTGGAACCCGGCTGTTTCTACAATCCTCATTCATGTCTGGAGATCGCTATTTTCACTGGGAAGAAGGGATCCCACTGTGGTGTAGGGACCAAAAGGCAGCAAATTGGGACATATAAGCTTGAGGTTGGTCCTGAATGGGGGGAAAGAAAGTCAGTGGTTCTTTTCAGTGGGTGGATAGCAATCGGCAAAAACAAGCAGGAGAATGGAAAATTGAGTGCGGAGCTTCATTTGAGAGTAAGACTAGATCCTGATCCGAGATATGTTTTCCAGTTTGATGATGCAACAAAACTTAGTCCTCAGATAGTTCAGCTTCAAGGCTCCATTAAACAGCCTATTTTCAGCTGCAAGTTCATCCGAGACAGGGTTCCCCAGGTGGATCGATTGAGCACATACTGGTCAGGTGCTGCTAACAATCCTGATCTGGATACAGAGAGAAGAGAGAGAAAGGGATGGAAGGTGACAATACATGATCTCTCTGGCTCGGCTATTGCAGCAGCCTTTATAACAACCCCATTTGTTCCAGCAACAGGTTGTGATTGGGTTGCAAGGTCCAACCCAGGAGCTTGGTTGATTGTTAGTCCTGATGCTTACAGGCCTGATAGCTGGCAGCCATGGGGAAAGCTTGAGGCATGGCGTGAGCGTGGCATCAGAGACTCCGTTTGCTGTCGATTTCGCCTTCTGTCAGAATGCCAGGAGGCTGTGGATCTCTTCATGTCTGAAATCCGCATCAATGCTGAAAAGGGTGGAGACTTTTCCATAGACACAGACAAACAGATGCAGGCAGCAGCGGCAACAGCAGCCGCCAGTCCGATACCAAGCCCACAAACCAGTGGAGACTTTGCAGGTTTGTATCCAGATGTTGGTGGTTTCGTCATGAGCTGTAGTGTGCAAGGGGAAGGAAAAGCCAGCAAGCCATTGGTACAACTAGCAATGAGGCATGTGACTTGTGTGGAGGATGCCGCCATCTTCATGGCTCTTGCAGCTGCAGTTGATCTCAGCATTGATGCATGTAGGCCCTTCCGGAAGTTCAGGAAACCCTCCTGCCCTTCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1005

Protein Analysis

435

Amino Acids

47.61

Weight (kDa)

8.17

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17640
fragaria_vesca	FvH4_7g07860 FvH4_7g07860
malus_domestica	MD02G1232700.v1.1 MD07G1081000.v1.1
prunus_persica	Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1
pyrus_communis	pycom02g20080 pycom07g06440
rosa_chinensis	RchiOBHm_Chr1g0341581
rosa_laevigata	RLG00000029104
rosa_multiflora	Rmu_sc0001400.1_g000028 Rmu_sc0038086.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312260
rosa_rugosa	Rorug01G0154900.1 Rorug01G0155000.1
rosa_samantha	Rh1AG170600 Rh1BG138500 Rh1CG158800 Rh1DG170900
rosa_wichuraiana	Rw1G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	1082
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AccIII	TCCGGA	1 cut(s)	1269
AciI	CCGC	5 cut(s)	467, 973, 1037, 1050, 1209
AclWI	GGATC	7 cut(s)	12, 312, 325, 488, 494, 633, 960
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	198
AcvI	CACGTG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	1170
AfiI	CCNNNNNNNGG	4 cut(s)	386, 610, 776, 1109
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	227, 563
AjnI	CCWGG	4 cut(s)	55, 618, 805, 939
AleI	CACNNNNGTG	1 cut(s)	327
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	4 cut(s)	600, 894, 990, 1077
AlwI	GGATC	7 cut(s)	12, 312, 325, 488, 494, 633, 960
AlwNI	CAGNNNCTG	1 cut(s)	653
Aor13HI	TCCGGA	1 cut(s)	1269
AoxI	GGCC	2 cut(s)	842, 1262
ApoI	RAATTY	1 cut(s)	120
AspS9I	GGNCC	4 cut(s)	336, 377, 798, 1263
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	718
AvaII	GGWCC	3 cut(s)	336, 377, 798
AxyI	CCTNAGG	1 cut(s)	9
BamHI	GGATCC	2 cut(s)	4, 317
BbrPI	CACGTG	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	638
BccI	CCATC	2 cut(s)	693, 1220
BciT130I	CCWGG	4 cut(s)	57, 620, 807, 941
BciVI	GTATCC	3 cut(s)	98, 667, 1110
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	4 cut(s)	600, 894, 990, 1077
BfaI	CTAG	2 cut(s)	491, 1175
BfmI	CTRYAG	2 cut(s)	1129, 1233
BfuAI	ACCTGC	1 cut(s)	1082
BfuI	GTATCC	3 cut(s)	98, 667, 1110
Bme1390I	CCNGG	5 cut(s)	57, 258, 620, 807, 941
Bme18I	GGWCC	3 cut(s)	336, 377, 798
BmgT120I	GGNCC	4 cut(s)	336, 377, 798, 1263
BmiI	GGNNCC	6 cut(s)	6, 255, 319, 337, 568, 615
BmrFI	CCNGG	5 cut(s)	57, 258, 620, 807, 941
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	8 cut(s)	161, 517, 823, 903, 984, 1014, 1195, 1243
BmuI	ACTGGG	1 cut(s)	315
BpmI	CTGGAG	2 cut(s)	196, 308
BpuEI	CTTGAG	2 cut(s)	389, 893
BpuMI	CCSGG	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	628
BsaAI	YACGTR	1 cut(s)	191
BsaBI	GATNNNNATC	2 cut(s)	428, 498
BsaJI	CCNNGG	3 cut(s)	618, 805, 860
BsaWI	WCCGGW	1 cut(s)	1269
Bsc4I	CCNNNNNNNGG	4 cut(s)	386, 610, 776, 1109
Bse1I	ACTGG	6 cut(s)	213, 310, 517, 647, 1053, 1077
Bse21I	CCTNAGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	1185
Bse8I	GATNNNNATC	2 cut(s)	428, 498
BseAI	TCCGGA	1 cut(s)	1269
BseBI	CCWGG	4 cut(s)	57, 620, 807, 941
BseCI	ATCGAT	1 cut(s)	628
BseDI	CCNNGG	3 cut(s)	618, 805, 860
BseGI	GGATG	3 cut(s)	600, 704, 1210
BseJI	GATNNNNATC	2 cut(s)	428, 498
BseLI	CCNNNNNNNGG	4 cut(s)	386, 610, 776, 1109
BseMI	GCAATG	1 cut(s)	1185
BseMII	CTCAG	3 cut(s)	23, 560, 1258
BseNI	ACTGG	6 cut(s)	213, 310, 517, 647, 1053, 1077
BshFI	GGCC	2 cut(s)	844, 1264
BshVI	ATCGAT	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	638
BsiSI	CCGG	2 cut(s)	258, 1270
BslFI	GGGAC	2 cut(s)	349, 370
BslI	CCNNNNNNNGG	4 cut(s)	386, 610, 776, 1109
BsmAI	GTCTC	4 cut(s)	600, 894, 990, 1077
BsmFI	GGGAC	2 cut(s)	349, 370
BsmI	GAATGC	2 cut(s)	95, 941
BsnI	GGCC	2 cut(s)	844, 1264
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp13I	TCCGGA	1 cut(s)	1269
Bsp19I	CCATGG	1 cut(s)	860
BspACI	CCGC	5 cut(s)	467, 973, 1037, 1050, 1209
BspANI	GGCC	2 cut(s)	844, 1264
BspCNI	CTCAG	3 cut(s)	22, 559, 1257
BspDI	ATCGAT	1 cut(s)	628
BspEI	TCCGGA	1 cut(s)	1269
BspHI	TCATGA	1 cut(s)	1122
BspLI	GGNNCC	6 cut(s)	6, 255, 319, 337, 568, 615
BspMAI	CTGCAG	1 cut(s)	1237
BspMI	ACCTGC	1 cut(s)	1082
BspPI	GGATC	7 cut(s)	12, 312, 325, 488, 494, 633, 960
BsrDI	GCAATG	1 cut(s)	1185
BsrI	ACTGG	6 cut(s)	213, 310, 517, 647, 1053, 1077
BssECI	CCNNGG	3 cut(s)	618, 805, 860
BssT1I	CCWWGG	1 cut(s)	860
Bst2UI	CCWGG	4 cut(s)	57, 620, 807, 941
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	3 cut(s)	106, 679, 962
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	854, 1029, 1156, 1160
BstDEI	CTNAG	6 cut(s)	9, 47, 163, 539, 546, 1244
BstDSI	CCRYGG	1 cut(s)	860
BstF5I	GGATG	3 cut(s)	600, 704, 1210
BstMAI	GTCTC	4 cut(s)	600, 894, 990, 1077
BstMWI	GCNNNNNNNGC	5 cut(s)	740, 1037, 1043, 1046, 1229
BstNI	CCWGG	4 cut(s)	57, 620, 807, 941
BstNSI	RCATGY	2 cut(s)	1190, 1260
BstSCI	CCNGG	5 cut(s)	55, 256, 618, 805, 939
BstSFI	CTRYAG	2 cut(s)	1129, 1233
BstX2I	RGATCY	4 cut(s)	4, 317, 493, 952
BstXI	CCANNNNNNTGG	2 cut(s)	813, 1219
BstYI	RGATCY	4 cut(s)	4, 317, 493, 952
Bsu15I	ATCGAT	1 cut(s)	628
Bsu36I	CCTNAGG	1 cut(s)	9
BsuI	GTATCC	3 cut(s)	98, 667, 1110
BsuRI	GGCC	2 cut(s)	844, 1264
BsuTUI	ATCGAT	1 cut(s)	628
BtgI	CCRYGG	1 cut(s)	860
BtsCI	GGATG	3 cut(s)	600, 704, 1210
BtsI	GCAGTG	2 cut(s)	204, 245
BtsIMutI	CAGTG	7 cut(s)	204, 245, 303, 322, 408, 421, 1084
BveI	ACCTGC	1 cut(s)	1082
Cac8I	GCNNGC	4 cut(s)	854, 1029, 1156, 1160
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	1122
Cfr13I	GGNCC	4 cut(s)	336, 377, 798, 1263
ClaI	ATCGAT	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	1169
CviQI	GTAC	1 cut(s)	1169
DdeI	CTNAG	6 cut(s)	9, 47, 163, 539, 546, 1244
DraI	TTTAAA	1 cut(s)	69
Eam1104I	CTCTTC	3 cut(s)	106, 679, 962
EarI	CTCTTC	3 cut(s)	106, 679, 962
Eco130I	CCWWGG	1 cut(s)	860
Eco147I	AGGCCT	1 cut(s)	844
Eco47I	GGWCC	3 cut(s)	336, 377, 798
Eco57I	CTGAAG	1 cut(s)	198
Eco72I	CACGTG	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	1263
EcoRII	CCWGG	4 cut(s)	55, 618, 805, 939
EcoT14I	CCWWGG	1 cut(s)	860
EcoT22I	ATGCAT	2 cut(s)	97, 1258
ErhI	CCWWGG	1 cut(s)	860
FaqI	GGGAC	2 cut(s)	349, 370
FokI	GGATG	3 cut(s)	587, 711, 1217
FspBI	CTAG	2 cut(s)	491, 1175
GsuI	CTGGAG	2 cut(s)	196, 308
HaeIII	GGCC	2 cut(s)	844, 1264
HapII	CCGG	2 cut(s)	258, 1270
HindIII	AAGCTT	2 cut(s)	365, 869
HinfI	GANTC	5 cut(s)	52, 135, 194, 230, 902
HpaII	CCGG	2 cut(s)	258, 1270
HphI	GGTGA	1 cut(s)	718
Hpy188I	TCNGA	9 cut(s)	76, 235, 504, 549, 605, 899, 934, 967, 1059
HpyAV	CCTTC	7 cut(s)	137, 307, 697, 935, 1139, 1276, 1305
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	5 cut(s)	740, 1037, 1043, 1046, 1229
HpyF3I	CTNAG	6 cut(s)	9, 47, 163, 539, 546, 1244
HpySE526I	ACGT	1 cut(s)	190
Kpn2I	TCCGGA	1 cut(s)	1269
LmnI	GCTCC	3 cut(s)	469, 572, 809
LweI	GCATC	8 cut(s)	161, 517, 823, 903, 984, 1014, 1195, 1243
MaeI	CTAG	2 cut(s)	491, 1175
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	2 cut(s)	706, 1189
MboII	GAAGA	7 cut(s)	93, 162, 239, 322, 696, 949, 1207
MflI	RGATCY	4 cut(s)	4, 317, 493, 952
MhlI	GDGCHC	1 cut(s)	638
MluCI	AATT	4 cut(s)	120, 156, 351, 458
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	1 cut(s)	825
Mph1103I	ATGCAT	2 cut(s)	97, 1258
MroI	TCCGGA	1 cut(s)	1269
MseI	TTAA	3 cut(s)	68, 240, 573
MslI	CAYNNNNRTG	3 cut(s)	112, 327, 1217
MspA1I	CMGCKG	3 cut(s)	591, 1037, 1232
MspI	CCGG	2 cut(s)	258, 1270
MspR9I	CCNGG	5 cut(s)	57, 258, 620, 807, 941
Mva1269I	GAATGC	2 cut(s)	95, 941
MvaI	CCWGG	4 cut(s)	57, 620, 807, 941
MwoI	GCNNNNNNNGC	5 cut(s)	740, 1037, 1043, 1046, 1229
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	860
NlaIV	GGNNCC	6 cut(s)	6, 255, 319, 337, 568, 615
NmeAIII	GCCGAG	1 cut(s)	710
NmuCI	GTSAC	2 cut(s)	706, 1189
NsiI	ATGCAT	2 cut(s)	97, 1258
NspI	RCATGY	2 cut(s)	1190, 1260
OliI	CACNNNNGTG	1 cut(s)	327
PagI	TCATGA	1 cut(s)	1122
PceI	AGGCCT	1 cut(s)	844
PctI	GAATGC	2 cut(s)	95, 941
PfeI	GAWTC	4 cut(s)	52, 135, 194, 230
PflMI	CCANNNNNTGG	1 cut(s)	1109
PfoI	TCCNGGA	1 cut(s)	55
PleI	GAGTC	1 cut(s)	896
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	896
Ppu21I	YACGTR	1 cut(s)	191
PsiI	TTATAA	1 cut(s)	752
Psp6I	CCWGG	4 cut(s)	55, 618, 805, 939
PspCI	CACGTG	1 cut(s)	191
PspGI	CCWGG	4 cut(s)	55, 618, 805, 939
PspN4I	GGNNCC	6 cut(s)	6, 255, 319, 337, 568, 615
PspPI	GGNCC	4 cut(s)	336, 377, 798, 1263
PstI	CTGCAG	1 cut(s)	1237
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	4 cut(s)	4, 317, 493, 952
PvuII	CAGCTG	2 cut(s)	591, 1232
RsaI	GTAC	1 cut(s)	1170
RsaNI	GTAC	1 cut(s)	1169
RseI	CAYNNNNRTG	3 cut(s)	112, 327, 1217
SaqAI	TTAA	3 cut(s)	68, 240, 573
Sau96I	GGNCC	4 cut(s)	336, 377, 798, 1263
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	5 cut(s)	57, 258, 620, 807, 941
SduI	GDGCHC	1 cut(s)	638
SfaNI	GCATC	8 cut(s)	161, 517, 823, 903, 984, 1014, 1195, 1243
SfcI	CTRYAG	2 cut(s)	1129, 1233
SinI	GGWCC	3 cut(s)	336, 377, 798
SmiMI	CAYNNNNRTG	3 cut(s)	112, 327, 1217
SmlI	CTYRAG	2 cut(s)	368, 872
SmoI	CTYRAG	2 cut(s)	368, 872
Sse9I	AATT	4 cut(s)	120, 156, 351, 458
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	5 cut(s)	467, 973, 1037, 1050, 1209
SspMI	CTAG	2 cut(s)	491, 1175
StuI	AGGCCT	1 cut(s)	844
StyD4I	CCNGG	5 cut(s)	55, 256, 618, 805, 939
StyI	CCWWGG	1 cut(s)	860
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	3 cut(s)	130, 628, 916
TasI	AATT	4 cut(s)	120, 156, 351, 458
TauI	GCSGC	3 cut(s)	1040, 1052, 1211
TfiI	GAWTC	4 cut(s)	52, 135, 194, 230
Tru1I	TTAA	3 cut(s)	68, 240, 573
Tru9I	TTAA	3 cut(s)	68, 240, 573
TscAI	CASTG	7 cut(s)	211, 252, 310, 329, 408, 421, 1084
TseFI	GTSAC	2 cut(s)	706, 1189
Tsp45I	GTSAC	2 cut(s)	706, 1189
TspDTI	ATGAA	6 cut(s)	102, 270, 464, 589, 949, 1207
TspGWI	ACGGA	1 cut(s)	895
TspRI	CASTG	7 cut(s)	211, 252, 310, 329, 408, 421, 1084
Van91I	CCANNNNNTGG	1 cut(s)	1109
VpaK11BI	GGWCC	3 cut(s)	336, 377, 798
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	2 cut(s)	1190, 1260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1162
XspI	CTAG	2 cut(s)	491, 1175
Zsp2I	ATGCAT	2 cut(s)	97, 1258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.