FvH4_7g07860

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008694
Physical Location & Seq
Reverse (-)
7756703 .. 7760641
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07860.t2

Sequence Viewer

Length: 1302 bp
ATGGATCCTCAGGCTTTTATTAGGTTGTCAATAGGCTCACTAGGATTGAGGATTCCTGGAACAGCTTTGAAATCTGAAAAGTCTGGGATTCATGCATTCTCTTCTCCATGTCTGTGTGAAATTCGCCTTCGAGGATTCCCTGTGCAGACAGTATCAGTCCCCTTGCTATCATCTCCTGAAGCTGCACCTGATTCTCATAGCATAGCCTCCAGTTTTTATCTTGAACATTCAGATGTCAAAGCGATGCTGGTACCTGGCTGTTTCTACAACCCGCATGCGTGTCTGGAGATTGCTGTTTTTACAGGGAGAAAAGGGTCCCATTGTGGCGTAGGGGTCAAAAGGCAGCAAATTGGGACATTCAAGCTGGAGGTTGGTCCTGAATGGGGAGCAGGAAAACCGGTTGTCCTCTTCAGTGGGTGGATAGGTATTGGCAAAAACAAGCAGGAGAGTGGAAAACTGAGCGTGGAGCTTCATTTGAGAGTAAGACTTGATCCTGATCCAAGATATGTTTTCCAGTTTGACGATGCAACGAGACTAAGTCCGCAGATTGTTCAGCTTCAAGGTTCCAATAAGCAGCCTATTTTCAGCTGCAGGTTTAGCCGGGACAGGGTTCCCCAGGTGGATCCACTGAGCAATTACTGGTCAGGTTCTGTGGATGATTCTAATCTCGAGACAGAAAGAAGAGAGAGAAAAGGATGGAAGGTGACAATACATGATCTTTCTGGCTCTGCTGTTGCAGCAGCCTTTATAACCACTCCATTTGTGCCATCAACAGGTTGTGATTGGGTTGCAAGATCAAACCCAGGAGCTTGGTTGATTGTTAGTCCTGATCCGTGCAGGCCTGAGAGCTGGCAGCCATGGGCAAAGCTTGAGGCATGGCGTGAGCGCGGTAGCATTAGAGACTCTGTTTGCTGCCGATTTCGCCTTTTATCTGAATGCCAGGAAGCAGCTGAGCTTCTCATGTCCGAGATCCACATCAATGCTGAAAAAGGTGGTGAATTTTTCATCGACACCGACAGACAGATGCAAGCAGCCGCAGCAGCAGCCCCTCCGCTGCCAAGTCCACAAAGCAGTGGAGACTATGCGGCTTTGGGTCCAGTTGAAGGTGGTTTTGTCATGAGCTGTAGAGTACAAGGAGAAGGGAAAAGCAGCAAGCCATTAGTACAATTAGCAATGAGGCATGTGACATGCGTCGAAGACGCTGCCATCTTCATGGCTCTTGCAGCGGCTGCTGATCTCAGCATCGAGGCATGTAGGCCTTTTCGTCGGAAGATCAGAAAACCATCCTGCCCTTCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

434

Amino Acids

47.32

Weight (kDa)

8.32

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 1 - 428 3.1e-181 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 749
Acc36I ACCTGC 1 cut(s) 582
Acc65I GGTACC 1 cut(s) 250
AccB1I GGYRCC 1 cut(s) 250
AccII CGCG 1 cut(s) 888
AciI CCGC 7 cut(s) 272, 542, 888, 1035, 1052, 1085, 1226
AclWI GGATC 7 cut(s) 12, 485, 491, 617, 630, 824, 964
AcsI RAATTY 2 cut(s) 120, 998
AcuI CTGAAG 2 cut(s) 198, 394
AfaI GTAC 3 cut(s) 252, 1131, 1164
AfiI CCNNNNNNNGG 4 cut(s) 383, 607, 773, 1103
AgeI ACCGGT 1 cut(s) 397
AgsI TTSAA 5 cut(s) 70, 224, 361, 560, 1103
AjnI CCWGG 5 cut(s) 55, 253, 615, 802, 939
Alw26I GTCTC 4 cut(s) 526, 665, 894, 1071
AlwI GGATC 7 cut(s) 12, 485, 491, 617, 630, 824, 964
AlwNI CAGNNNCTG 2 cut(s) 650, 1229
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 2 cut(s) 839, 1256
ApoI RAATTY 2 cut(s) 120, 998
AsiGI ACCGGT 1 cut(s) 397
Asp718I GGTACC 1 cut(s) 250
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 3 cut(s) 315, 374, 1094
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 2 cut(s) 715, 1007
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 3 cut(s) 315, 374, 1094
AxyI CCTNAGG 1 cut(s) 9
BamHI GGATCC 2 cut(s) 4, 622
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 1203
BccI CCATC 4 cut(s) 690, 775, 1214, 1291
BcgI CGANNNNNNTGC 2 cut(s) 1184, 1218
BciT130I CCWGG 5 cut(s) 57, 255, 617, 804, 941
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 4 cut(s) 526, 665, 894, 1071
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 2 cut(s) 589, 1123
BfuAI ACCTGC 1 cut(s) 582
BlpI GCTNAGC 1 cut(s) 951
Bme1390I CCNGG 6 cut(s) 57, 255, 602, 617, 804, 941
Bme18I GGWCC 3 cut(s) 315, 374, 1094
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 3 cut(s) 315, 374, 1094
BmiI GGNNCC 8 cut(s) 6, 252, 316, 317, 565, 612, 624, 1095
BmrFI CCNGG 6 cut(s) 57, 255, 602, 617, 804, 941
BmsI GCATC 4 cut(s) 234, 514, 1014, 1251
BoxI GACNNNNGTC 1 cut(s) 1190
BpiI GAAGAC 1 cut(s) 1203
BpmI CTGGAG 3 cut(s) 193, 305, 386
Bpu1102I GCTNAGC 1 cut(s) 951
BpuEI CTTGAG 1 cut(s) 890
BpuMI CCSGG 1 cut(s) 602
BsaBI GATNNNNATC 3 cut(s) 495, 663, 974
BsaJI CCNNGG 3 cut(s) 615, 802, 857
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 607, 773, 1103
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 4 cut(s) 210, 514, 644, 1097
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 1179
Bse8I GATNNNNATC 3 cut(s) 495, 663, 974
BseBI CCWGG 5 cut(s) 57, 255, 617, 804, 941
BseDI CCNNGG 3 cut(s) 615, 802, 857
BseGI GGATG 3 cut(s) 661, 701, 1283
BseJI GATNNNNATC 3 cut(s) 495, 663, 974
BseLI CCNNNNNNNGG 4 cut(s) 383, 607, 773, 1103
BseMI GCAATG 1 cut(s) 1179
BseMII CTCAG 6 cut(s) 23, 449, 620, 834, 942, 1252
BseNI ACTGG 4 cut(s) 210, 514, 644, 1097
BsgI GTGCAG 3 cut(s) 164, 168, 856
Bsh1236I CGCG 1 cut(s) 888
BshFI GGCC 2 cut(s) 841, 1258
BshNI GGYRCC 1 cut(s) 250
BshTI ACCGGT 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 2 cut(s) 398, 601
BslFI GGGAC 4 cut(s) 143, 301, 367, 617
BslI CCNNNNNNNGG 4 cut(s) 383, 607, 773, 1103
BsmAI GTCTC 4 cut(s) 526, 665, 894, 1071
BsmFI GGGAC 4 cut(s) 143, 301, 367, 617
BsmI GAATGC 2 cut(s) 95, 941
BsnI GGCC 2 cut(s) 841, 1258
BsoBI CYCGRG 1 cut(s) 668
Bsp1720I GCTNAGC 1 cut(s) 951
Bsp19I CCATGG 1 cut(s) 857
BspACI CCGC 7 cut(s) 272, 542, 888, 1035, 1052, 1085, 1226
BspANI GGCC 2 cut(s) 841, 1258
BspCNI CTCAG 6 cut(s) 22, 450, 621, 835, 943, 1251
BspFNI CGCG 1 cut(s) 888
BspHI TCATGA 1 cut(s) 1116
BspLI GGNNCC 8 cut(s) 6, 252, 316, 317, 565, 612, 624, 1095
BspMAI CTGCAG 1 cut(s) 593
BspMI ACCTGC 1 cut(s) 582
BspPI GGATC 7 cut(s) 12, 485, 491, 617, 630, 824, 964
BspT107I GGYRCC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 1179
BsrFI RCCGGY 1 cut(s) 397
BsrI ACTGG 4 cut(s) 210, 514, 644, 1097
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 3 cut(s) 615, 802, 857
BssT1I CCWWGG 1 cut(s) 857
Bst2UI CCWGG 5 cut(s) 57, 255, 617, 804, 941
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 3 cut(s) 106, 413, 676
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstC8I GCNNGC 5 cut(s) 276, 839, 851, 1029, 1154
BstDEI CTNAG 7 cut(s) 9, 458, 536, 629, 843, 951, 1238
BstDSI CCRYGG 1 cut(s) 857
BstF5I GGATG 3 cut(s) 661, 701, 1283
BstFNI CGCG 1 cut(s) 888
BstHHI GCGC 1 cut(s) 888
BstMAI GTCTC 4 cut(s) 526, 665, 894, 1071
BstMWI GCNNNNNNNGC 8 cut(s) 597, 737, 921, 1037, 1040, 1043, 1223, 1229
BstNI CCWGG 5 cut(s) 57, 255, 617, 804, 941
BstNSI RCATGY 4 cut(s) 278, 1184, 1191, 1254
BstPAI GACNNNNGTC 1 cut(s) 1190
BstSCI CCNGG 6 cut(s) 55, 253, 600, 615, 802, 939
BstSFI CTRYAG 2 cut(s) 589, 1123
BstUI CGCG 1 cut(s) 888
BstV2I GAAGAC 1 cut(s) 1203
BstX2I RGATCY 3 cut(s) 4, 622, 969
BstXI CCANNNNNNTGG 2 cut(s) 810, 1213
BstYI RGATCY 3 cut(s) 4, 622, 969
Bsu36I CCTNAGG 1 cut(s) 9
BsuRI GGCC 2 cut(s) 841, 1258
BtgI CCRYGG 1 cut(s) 857
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 3 cut(s) 661, 701, 1283
BtsI GCAGTG 1 cut(s) 1078
BtsIMutI CAGTG 3 cut(s) 418, 626, 1078
BveI ACCTGC 1 cut(s) 582
Cac8I GCNNGC 5 cut(s) 276, 839, 851, 1029, 1154
CaiI CAGNNNCTG 2 cut(s) 650, 1229
CciI TCATGA 1 cut(s) 1116
CfoI GCGC 1 cut(s) 888
Cfr10I RCCGGY 1 cut(s) 397
Cfr13I GGNCC 3 cut(s) 315, 374, 1094
CseI GACGC 2 cut(s) 1180, 1208
Csp6I GTAC 3 cut(s) 251, 1130, 1163
CspAI ACCGGT 1 cut(s) 397
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviQI GTAC 3 cut(s) 251, 1130, 1163
DdeI CTNAG 7 cut(s) 9, 458, 536, 629, 843, 951, 1238
Eam1104I CTCTTC 3 cut(s) 106, 413, 676
EarI CTCTTC 3 cut(s) 106, 413, 676
Eco130I CCWWGG 1 cut(s) 857
Eco147I AGGCCT 2 cut(s) 841, 1258
Eco47I GGWCC 3 cut(s) 315, 374, 1094
Eco57I CTGAAG 2 cut(s) 198, 394
Eco81I CCTNAGG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 5 cut(s) 55, 253, 615, 802, 939
EcoT14I CCWWGG 1 cut(s) 857
EcoT22I ATGCAT 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 857
FaqI GGGAC 4 cut(s) 143, 301, 367, 617
FauI CCCGC 1 cut(s) 279
FokI GGATG 3 cut(s) 668, 708, 1270
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 887
GsuI CTGGAG 3 cut(s) 193, 305, 386
HaeIII GGCC 2 cut(s) 841, 1258
HapII CCGG 2 cut(s) 398, 601
HgaI GACGC 2 cut(s) 1180, 1208
HhaI GCGC 1 cut(s) 888
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 6 cut(s) 52, 88, 135, 191, 659, 902
HpaII CCGG 2 cut(s) 398, 601
HphI GGTGA 2 cut(s) 715, 1007
Hpy166II GTNNAC 1 cut(s) 1064
Hpy188I TCNGA 6 cut(s) 76, 232, 934, 967, 1269, 1277
Hpy188III TCNNGA 9 cut(s) 176, 221, 284, 377, 494, 668, 670, 827, 1117
Hpy8I GTNNAC 1 cut(s) 1064
Hpy99I CGWCG 2 cut(s) 1196, 1269
HpyAV CCTTC 5 cut(s) 137, 694, 1097, 1133, 1302
HpyCH4III ACNGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 8 cut(s) 597, 737, 921, 1037, 1040, 1043, 1223, 1229
HpyF3I CTNAG 7 cut(s) 9, 458, 536, 629, 843, 951, 1238
HspAI GCGC 1 cut(s) 886
KflI GGGWCCC 1 cut(s) 315
KpnI GGTACC 1 cut(s) 254
LmnI GCTCC 3 cut(s) 386, 466, 806
LweI GCATC 4 cut(s) 234, 514, 1014, 1251
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 703, 1183
MboII GAAGA 6 cut(s) 93, 400, 693, 1201, 1208, 1282
MflI RGATCY 3 cut(s) 4, 622, 969
MluCI AATT 5 cut(s) 120, 348, 634, 998, 1166
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 1 cut(s) 1247
Mph1103I ATGCAT 1 cut(s) 97
MslI CAYNNNNRTG 4 cut(s) 112, 231, 978, 1211
MspA1I CMGCKG 4 cut(s) 588, 950, 1054, 1226
MspI CCGG 2 cut(s) 398, 601
MspR9I CCNGG 6 cut(s) 57, 255, 602, 617, 804, 941
Mva1269I GAATGC 2 cut(s) 95, 941
MvaI CCWGG 5 cut(s) 57, 255, 617, 804, 941
MvnI CGCG 1 cut(s) 888
MwoI GCNNNNNNNGC 8 cut(s) 597, 737, 921, 1037, 1040, 1043, 1223, 1229
NciI CCSGG 1 cut(s) 602
NcoI CCATGG 1 cut(s) 857
NlaIV GGNNCC 8 cut(s) 6, 252, 316, 317, 565, 612, 624, 1095
NmuCI GTSAC 2 cut(s) 703, 1183
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 4 cut(s) 278, 1184, 1191, 1254
PaeI GCATGC 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 668
PagI TCATGA 1 cut(s) 1116
PceI AGGCCT 2 cut(s) 841, 1258
PctI GAATGC 2 cut(s) 95, 941
PfeI GAWTC 5 cut(s) 52, 88, 135, 191, 659
PflFI GACNNNGTC 1 cut(s) 537
PfoI TCCNGGA 1 cut(s) 55
PinAI ACCGGT 1 cut(s) 397
PleI GAGTC 1 cut(s) 896
PpsI GAGTC 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 315
PshAI GACNNNNGTC 1 cut(s) 1190
PsiI TTATAA 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 5 cut(s) 55, 253, 615, 802, 939
PspGI CCWGG 5 cut(s) 55, 253, 615, 802, 939
PspN4I GGNNCC 8 cut(s) 6, 252, 316, 317, 565, 612, 624, 1095
PspPI GGNCC 3 cut(s) 315, 374, 1094
PspPPI RGGWCCY 1 cut(s) 315
PstI CTGCAG 1 cut(s) 593
PstNI CAGNNNCTG 2 cut(s) 650, 1229
PsuI RGATCY 3 cut(s) 4, 622, 969
PsyI GACNNNGTC 1 cut(s) 537
PvuII CAGCTG 2 cut(s) 588, 950
RsaI GTAC 3 cut(s) 252, 1131, 1164
RsaNI GTAC 3 cut(s) 251, 1130, 1163
RseI CAYNNNNRTG 4 cut(s) 112, 231, 978, 1211
Sau96I GGNCC 3 cut(s) 315, 374, 1094
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 6 cut(s) 57, 255, 602, 617, 804, 941
SfaNI GCATC 4 cut(s) 234, 514, 1014, 1251
SfcI CTRYAG 2 cut(s) 589, 1123
Sfr274I CTCGAG 1 cut(s) 668
SinI GGWCC 3 cut(s) 315, 374, 1094
SlaI CTCGAG 1 cut(s) 668
SmiMI CAYNNNNRTG 4 cut(s) 112, 231, 978, 1211
SmlI CTYRAG 2 cut(s) 668, 869
SmoI CTYRAG 2 cut(s) 668, 869
SphI GCATGC 1 cut(s) 278
Sse9I AATT 5 cut(s) 120, 348, 634, 998, 1166
SseBI AGGCCT 2 cut(s) 841, 1258
SsiI CCGC 7 cut(s) 272, 542, 888, 1035, 1052, 1085, 1226
SspMI CTAG 1 cut(s) 41
StuI AGGCCT 2 cut(s) 841, 1258
StyD4I CCNGG 6 cut(s) 55, 253, 600, 615, 802, 939
StyI CCWWGG 1 cut(s) 857
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 5 cut(s) 130, 669, 1008, 1194, 1245
TasI AATT 5 cut(s) 120, 348, 634, 998, 1166
TatI WGTACW 2 cut(s) 1129, 1162
TauI GCSGC 3 cut(s) 1037, 1088, 1229
TfiI GAWTC 5 cut(s) 52, 88, 135, 191, 659
TscAI CASTG 3 cut(s) 418, 633, 1078
TseFI GTSAC 2 cut(s) 703, 1183
Tsp45I GTSAC 2 cut(s) 703, 1183
TspDTI ATGAA 4 cut(s) 80, 461, 994, 1201
TspGWI ACGGA 1 cut(s) 822
TspRI CASTG 3 cut(s) 418, 633, 1078
Tth111I GACNNNGTC 1 cut(s) 537
VpaK11BI GGWCC 3 cut(s) 315, 374, 1094
XapI RAATTY 2 cut(s) 120, 998
XceI RCATGY 4 cut(s) 278, 1184, 1191, 1254
XhoI CTCGAG 1 cut(s) 668
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.