Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038086.1

Orthogroup ID

OG0008694

Physical Location & Seq

Genomic Coordinates Forward (+)

1483 .. 3106

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038086.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 995 bp

atggatcctcaggcttttattaggttgtcaataggctcactgggattgaggattcctggaacagctttgaaatctgaaaagtctgggattcatgcattctcttctccatgtttgtgtgaaattcgccttcggggattccctgtgcagacagtatcagtccccttactatcatctcctgaagctgcacctgatactcatagcatagcctcaagtttttatcttgaacattcagatgtcaaagcgatgctggtacctggctgtttctacaacccacatgcatgtctggagattgctgtttttacagggaggaaaggatcccattgtggcgtaggggtcaaaaggcagcaaattgggacatttaagctggaggttggtcctgaatggggagcaggaaagccagttgtccttttcagtgggtggattggtattggcaaaaacaagcaggagaatggaaaactgagtgtggagcttcatttgagagtaagacttgatcctgatccaagatatgttttccagtttgatgatgtgacaagactaagtccgcagattgttcagcttcaaggttccaataagcagcctattttcagctgcaggtttagccgagacagggttccccaggtggatccactgagcaattactggtcaggttctgtggatgattctaatcttgagacagaaaggagagagagaaaaggatggaaggtgacgatacatgatctttctggctctgctgttgcagcagcctttataaccactccatttgtgccatcaacaggttgtgattgggttgcaagatcaaatccaggagcttggttgattgttagtcctgatccttgcaggcctgagagctggcagccatgggcaaagcttgaggcatggcgggagcgtggtagcatcagagactctgtttgctgccgaattcgccttttgtctgaatgccaggaagcagcagagcttctcatgtctgaaatccacatcaatgctgaaaagggtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1005

Protein Analysis

332

Amino Acids

36.67

Weight (kDa)

8.27

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17640
fragaria_vesca	FvH4_7g07860 FvH4_7g07860
malus_domestica	MD02G1232700.v1.1 MD07G1081000.v1.1
prunus_persica	Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1
pyrus_communis	pycom02g20080 pycom07g06440
rosa_chinensis	RchiOBHm_Chr1g0341581
rosa_laevigata	RLG00000029104
rosa_multiflora	Rmu_sc0001400.1_g000028 Rmu_sc0038086.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312260
rosa_rugosa	Rorug01G0154900.1 Rorug01G0155000.1
rosa_samantha	Rh1AG170600 Rh1BG138500 Rh1CG158800 Rh1DG170900
rosa_wichuraiana	Rw1G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	582
Acc65I	GGTACC	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	250
AciI	CCGC	2 cut(s)	542, 880
AclWI	GGATC	8 cut(s)	12, 309, 322, 485, 491, 617, 630, 824
AcsI	RAATTY	2 cut(s)	120, 918
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	383, 607, 773
AgsI	TTSAA	3 cut(s)	70, 224, 560
AjnI	CCWGG	5 cut(s)	55, 253, 615, 802, 939
Alw26I	GTCTC	3 cut(s)	597, 665, 894
AlwI	GGATC	8 cut(s)	12, 309, 322, 485, 491, 617, 630, 824
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	839
ApeKI	GCWGC	9 cut(s)	182, 343, 574, 588, 737, 740, 853, 912, 947
ApoI	RAATTY	2 cut(s)	120, 918
Asp718I	GGTACC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	374
AxyI	CCTNAGG	1 cut(s)	9
BamHI	GGATCC	3 cut(s)	4, 314, 622
BanI	GGYRCC	1 cut(s)	250
BbvI	GCAGC	9 cut(s)	169, 355, 575, 586, 749, 752, 865, 899, 959
BccI	CCATC	2 cut(s)	690, 775
BciT130I	CCWGG	5 cut(s)	57, 255, 617, 804, 941
BcoDI	GTCTC	3 cut(s)	597, 665, 894
BfmI	CTRYAG	1 cut(s)	589
BfuAI	ACCTGC	1 cut(s)	582
BisI	GCNGC	9 cut(s)	183, 344, 575, 589, 738, 741, 854, 913, 948
BlsI	GCNGC	9 cut(s)	184, 345, 576, 590, 739, 742, 855, 914, 949
Bme1390I	CCNGG	5 cut(s)	57, 255, 617, 804, 941
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	6 cut(s)	6, 252, 316, 565, 612, 624
BmrFI	CCNGG	5 cut(s)	57, 255, 617, 804, 941
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	234, 903
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	2 cut(s)	305, 386
BpuEI	CTTGAG	3 cut(s)	193, 689, 890
BsaBI	GATNNNNATC	2 cut(s)	495, 663
BsaJI	CCNNGG	2 cut(s)	615, 857
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 607, 773
Bse1I	ACTGG	4 cut(s)	45, 398, 514, 644
Bse21I	CCTNAGG	1 cut(s)	9
Bse8I	GATNNNNATC	2 cut(s)	495, 663
BseBI	CCWGG	5 cut(s)	57, 255, 617, 804, 941
BseDI	CCNNGG	2 cut(s)	615, 857
BseGI	GGATG	2 cut(s)	661, 701
BseJI	GATNNNNATC	2 cut(s)	495, 663
BseLI	CCNNNNNNNGG	3 cut(s)	383, 607, 773
BseMII	CTCAG	4 cut(s)	23, 449, 620, 834
BseNI	ACTGG	4 cut(s)	45, 398, 514, 644
BseXI	GCAGC	9 cut(s)	169, 355, 575, 586, 749, 752, 865, 899, 959
BsgI	GTGCAG	2 cut(s)	164, 168
BshFI	GGCC	1 cut(s)	841
BshNI	GGYRCC	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	143, 367
BslI	CCNNNNNNNGG	3 cut(s)	383, 607, 773
BsmAI	GTCTC	3 cut(s)	597, 665, 894
BsmFI	GGGAC	2 cut(s)	143, 367
BsmI	GAATGC	2 cut(s)	95, 941
BsnI	GGCC	1 cut(s)	841
Bsp143I	GATC	8 cut(s)	4, 314, 490, 496, 622, 715, 794, 829
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	2 cut(s)	542, 880
BspANI	GGCC	1 cut(s)	841
BspCNI	CTCAG	4 cut(s)	22, 450, 621, 835
BspLI	GGNNCC	6 cut(s)	6, 252, 316, 565, 612, 624
BspMAI	CTGCAG	1 cut(s)	593
BspMI	ACCTGC	1 cut(s)	582
BspPI	GGATC	8 cut(s)	12, 309, 322, 485, 491, 617, 630, 824
BspT107I	GGYRCC	1 cut(s)	250
BsrI	ACTGG	4 cut(s)	45, 398, 514, 644
BssECI	CCNNGG	2 cut(s)	615, 857
BssMI	GATC	8 cut(s)	4, 314, 490, 496, 622, 715, 794, 829
BssT1I	CCWWGG	1 cut(s)	857
Bst2UI	CCWGG	5 cut(s)	57, 255, 617, 804, 941
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	839, 851
BstDEI	CTNAG	5 cut(s)	9, 458, 536, 629, 843
BstDSI	CCRYGG	1 cut(s)	857
BstF5I	GGATG	2 cut(s)	661, 701
BstKTI	GATC	8 cut(s)	7, 317, 493, 499, 625, 718, 797, 832
BstMAI	GTCTC	3 cut(s)	597, 665, 894
BstMBI	GATC	8 cut(s)	4, 314, 490, 496, 622, 715, 794, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	597, 737, 921
BstNI	CCWGG	5 cut(s)	57, 255, 617, 804, 941
BstNSI	RCATGY	2 cut(s)	278, 282
BstSCI	CCNGG	5 cut(s)	55, 253, 615, 802, 939
BstSFI	CTRYAG	1 cut(s)	589
BstV1I	GCAGC	9 cut(s)	169, 355, 575, 586, 749, 752, 865, 899, 959
BstX2I	RGATCY	3 cut(s)	4, 314, 622
BstXI	CCANNNNNNTGG	1 cut(s)	810
BstYI	RGATCY	3 cut(s)	4, 314, 622
Bsu36I	CCTNAGG	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	841
BtgI	CCRYGG	1 cut(s)	857
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	661, 701
BtsIMutI	CAGTG	3 cut(s)	38, 418, 626
BveI	ACCTGC	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	839, 851
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
CviAII	CATG	8 cut(s)	92, 108, 275, 279, 713, 858, 876, 961
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	5 cut(s)	9, 458, 536, 629, 843
DpnI	GATC	8 cut(s)	6, 316, 492, 498, 624, 717, 796, 831
DpnII	GATC	8 cut(s)	4, 314, 490, 496, 622, 715, 794, 829
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	857
Eco147I	AGGCCT	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	918
EcoRII	CCWGG	5 cut(s)	55, 253, 615, 802, 939
EcoT14I	CCWWGG	1 cut(s)	857
EcoT22I	ATGCAT	2 cut(s)	97, 280
ErhI	CCWWGG	1 cut(s)	857
FaeI	CATG	8 cut(s)	95, 111, 278, 282, 716, 861, 879, 964
FaqI	GGGAC	2 cut(s)	143, 367
FatI	CATG	8 cut(s)	91, 107, 274, 278, 712, 857, 875, 960
FauI	CCCGC	1 cut(s)	873
Fnu4HI	GCNGC	9 cut(s)	183, 344, 575, 589, 738, 741, 854, 913, 948
FokI	GGATG	2 cut(s)	668, 708
Fsp4HI	GCNGC	9 cut(s)	183, 344, 575, 589, 738, 741, 854, 913, 948
GluI	GCNGC	9 cut(s)	183, 344, 575, 589, 738, 741, 854, 913, 948
GsuI	CTGGAG	2 cut(s)	305, 386
HaeIII	GGCC	1 cut(s)	841
Hin1II	CATG	8 cut(s)	95, 111, 278, 282, 716, 861, 879, 964
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	5 cut(s)	52, 88, 135, 659, 902
HphI	GGTGA	1 cut(s)	715
Hpy188I	TCNGA	5 cut(s)	76, 232, 899, 934, 967
Hpy188III	TCNNGA	7 cut(s)	176, 221, 284, 377, 494, 668, 827
HpyAV	CCTTC	2 cut(s)	137, 694
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	8 cut(s)	95, 145, 185, 278, 591, 737, 791, 837
HpyF10VI	GCNNNNNNNGC	3 cut(s)	597, 737, 921
HpyF3I	CTNAG	5 cut(s)	9, 458, 536, 629, 843
Hsp92II	CATG	8 cut(s)	95, 111, 278, 282, 716, 861, 879, 964
KpnI	GGTACC	1 cut(s)	254
Kzo9I	GATC	8 cut(s)	4, 314, 490, 496, 622, 715, 794, 829
LmnI	GCTCC	4 cut(s)	386, 466, 806, 883
Lsp1109I	GCAGC	9 cut(s)	169, 355, 575, 586, 749, 752, 865, 899, 959
LweI	GCATC	2 cut(s)	234, 903
MaeIII	GTNAC	2 cut(s)	526, 703
MalI	GATC	8 cut(s)	6, 316, 492, 498, 624, 717, 796, 831
MboI	GATC	8 cut(s)	4, 314, 490, 496, 622, 715, 794, 829
MboII	GAAGA	1 cut(s)	93
MflI	RGATCY	3 cut(s)	4, 314, 622
MluCI	AATT	4 cut(s)	120, 348, 634, 918
MlyI	GAGTC	1 cut(s)	896
MnlI	CCTC	6 cut(s)	18, 42, 217, 300, 361, 865
Mph1103I	ATGCAT	2 cut(s)	97, 280
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	4 cut(s)	112, 231, 277, 978
MspA1I	CMGCKG	1 cut(s)	588
MspR9I	CCNGG	5 cut(s)	57, 255, 617, 804, 941
Mva1269I	GAATGC	2 cut(s)	95, 941
MvaI	CCWGG	5 cut(s)	57, 255, 617, 804, 941
MwoI	GCNNNNNNNGC	3 cut(s)	597, 737, 921
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	8 cut(s)	4, 314, 490, 496, 622, 715, 794, 829
NlaIII	CATG	8 cut(s)	95, 111, 278, 282, 716, 861, 879, 964
NlaIV	GGNNCC	6 cut(s)	6, 252, 316, 565, 612, 624
NmeAIII	GCCGAG	1 cut(s)	626
NmuCI	GTSAC	2 cut(s)	526, 703
NsiI	ATGCAT	2 cut(s)	97, 280
NspI	RCATGY	2 cut(s)	278, 282
PceI	AGGCCT	1 cut(s)	841
PctI	GAATGC	2 cut(s)	95, 941
PfeI	GAWTC	4 cut(s)	52, 88, 135, 659
PflFI	GACNNNGTC	1 cut(s)	537
PfoI	TCCNGGA	2 cut(s)	55, 802
PkrI	GCNGC	9 cut(s)	184, 345, 576, 590, 739, 742, 855, 914, 949
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	749
Psp6I	CCWGG	5 cut(s)	55, 253, 615, 802, 939
PspGI	CCWGG	5 cut(s)	55, 253, 615, 802, 939
PspN4I	GGNNCC	6 cut(s)	6, 252, 316, 565, 612, 624
PspPI	GGNCC	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	593
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	3 cut(s)	4, 314, 622
PsyI	GACNNNGTC	1 cut(s)	537
PvuII	CAGCTG	1 cut(s)	588
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	4 cut(s)	112, 231, 277, 978
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	9 cut(s)	183, 344, 575, 589, 738, 741, 854, 913, 948
Sau3AI	GATC	8 cut(s)	4, 314, 490, 496, 622, 715, 794, 829
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	5 cut(s)	57, 255, 617, 804, 941
SfaNI	GCATC	2 cut(s)	234, 903
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	4 cut(s)	112, 231, 277, 978
SmlI	CTYRAG	3 cut(s)	208, 668, 869
SmoI	CTYRAG	3 cut(s)	208, 668, 869
Sse9I	AATT	4 cut(s)	120, 348, 634, 918
SseBI	AGGCCT	1 cut(s)	841
SsiI	CCGC	2 cut(s)	542, 880
StuI	AGGCCT	1 cut(s)	841
StyD4I	CCNGG	5 cut(s)	55, 253, 615, 802, 939
StyI	CCWWGG	1 cut(s)	857
TaaI	ACNGT	1 cut(s)	151
TasI	AATT	4 cut(s)	120, 348, 634, 918
TfiI	GAWTC	4 cut(s)	52, 88, 135, 659
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	3 cut(s)	45, 418, 633
TseFI	GTSAC	2 cut(s)	526, 703
TseI	GCWGC	9 cut(s)	182, 343, 574, 588, 737, 740, 853, 912, 947
Tsp45I	GTSAC	2 cut(s)	526, 703
TspDTI	ATGAA	2 cut(s)	80, 461
TspRI	CASTG	3 cut(s)	45, 418, 633
Tth111I	GACNNNGTC	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	2 cut(s)	120, 918
XceI	RCATGY	2 cut(s)	278, 282
Zsp2I	ATGCAT	2 cut(s)	97, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.