Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008694

Physical Location & Seq

Genomic Coordinates Reverse (-)

16404622 .. 16410545

Gene Structure 5924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G106000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGATCCTCAGGCTTTTATTAGGCTGTCAATAAGCTCACTGGGATTGAGGATTCCTGGAACAGCGCTGAAGTCTGAAAAATCTGGGATTCATGCATTCTCTTCTCCATATTCGTGTGAAATTCGCCTTCGAGGATTCCCTATGCAGACAGCGTCAGTCCCCTTAGTATCCTCTTCTGAAGCTACACTTGATTCTCATACCATTGCCTCAAGTTTTTACCTTGAAGAATCAGATATTAAAGCGTTGCTGGAACCTGGGTGTTTCTACAGTCCTCATGCCTTTCTGGAGATTGCTATTTTCACAGGGAAGAAGGGCTCCCACTGTGGTGTAGGGGTCAAAAGGCAGCAAATTGGGACATATAAGCTGGAGGTTGGTCCTGAATGGGGGGAAGGAAAGCCAGTGGTTCTCTTTAGTGGGTGGATAGGTATCGGAAAAAACAAGCAGGAGGGTGGAAAATTGAGTGCCGAGCTTCATTTGAGAGTAAGATTAGATCCTGATCCAAGATATGTATTCCAGTTTGACGATGTCACAAAACTGAGTCCTCAGGTTGTGCAGCTTCAAGGCTCCATTAAGCAGCCTATTTTCAGTTGCAAGTTCATCCGAGACAGGGTTCCCCATGCGGATCCACTAAGCACTTACTGGTCAGGTTCTGCTAACAATACTGATCTCGAATCAGAGAGAAGAGAGAGAAAGGGATGGAAGGTGACCATACATGATCTCTCTGGCTCGGCTGTTGCAGCAGCCTTTATAACAACTCCATTTGTTCCATCAACAGGTTGTGATTGGGTTGCAAAGTCCAACCCAGGAGCTTGGATGATTGTTAGTCCTGATCCTTGCAGGCCTGACAGTTGGCAGCCATGGGGAAAGCTTGAGGCATGGCGTGAGCGTGGCATTAGAGACTCCGTTTGCTGCCGATTTCGCCTTCTTTCTGAATGCCAGGAGGCAGTGGAGCTCCTCCAGTCTGAAATCCGCATCAATGCTGAAAAGGGTGGGGAGTTTTTCATAGACACAGACAAACAGATGCGAGCAGCAGCAGAGGCGGCGGCGGCCAGTCCAATACCAAGCCCACAAAGCAGTGGAGACTTTGCAGGTTTAGGTCCAGTAGTAGGTGGTTTTGTCATGAGCTGTAGAGTGCAAGGGGAGGGAAAGAGCAGCAAGCCATTGGTACAACTAGCCATGAGGCATGTTACGTGCGTGGAGGACGCCGCCATCTTCATGGCTCTTGCAGCTGCTGTTGATCTCAGCATTGAGGCATGTAGGCCCTTCCGCCGGAAGTTCAGGAAACCATCCTTCCATTCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1005

Protein Analysis

435

Amino Acids

47.58

Weight (kDa)

8.39

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17640
fragaria_vesca	FvH4_7g07860 FvH4_7g07860
malus_domestica	MD02G1232700.v1.1 MD07G1081000.v1.1
prunus_persica	Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1 Prupe.2G106000_v2.0.a1
pyrus_communis	pycom02g20080 pycom07g06440
rosa_chinensis	RchiOBHm_Chr1g0341581
rosa_laevigata	RLG00000029104
rosa_multiflora	Rmu_sc0001400.1_g000028 Rmu_sc0038086.1_g000001
rosa_roxburghii	Rroxscaffold_4G00312260
rosa_rugosa	Rorug01G0154900.1 Rorug01G0155000.1
rosa_samantha	Rh1AG170600 Rh1BG138500 Rh1CG158800 Rh1DG170900
rosa_wichuraiana	Rw1G014190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
Acc36I	ACCTGC	1 cut(s)	1079
AciI	CCGC	7 cut(s)	620, 970, 1040, 1043, 1046, 1206, 1267
AclWI	GGATC	6 cut(s)	12, 485, 491, 617, 630, 824
AcoI	YGGCCR	1 cut(s)	1047
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	2 cut(s)	89, 198
AcyI	GRCGYC	1 cut(s)	1203
AfaI	GTAC	1 cut(s)	1167
AfeI	AGCGCT	1 cut(s)	66
AfiI	CCNNNNNNNGG	5 cut(s)	383, 607, 773, 1106, 1269
AgsI	TTSAA	2 cut(s)	224, 560
AjnI	CCWGG	4 cut(s)	55, 253, 802, 936
AleI	CACNNNNGTG	1 cut(s)	324
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	3 cut(s)	597, 891, 1074
AlwI	GGATC	6 cut(s)	12, 485, 491, 617, 630, 824
AlwNI	CAGNNNCTG	2 cut(s)	650, 1232
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	3 cut(s)	839, 1047, 1259
ApoI	RAATTY	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	374, 1097, 1260
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	2 cut(s)	374, 1097
AxyI	CCTNAGG	2 cut(s)	9, 543
BamHI	GGATCC	2 cut(s)	4, 622
BanII	GRGCYC	2 cut(s)	317, 954
Bbv12I	GWGCWC	1 cut(s)	954
BccI	CCATC	4 cut(s)	690, 775, 1217, 1294
BciT130I	CCWGG	4 cut(s)	57, 255, 804, 938
BciVI	GTATCC	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	597, 891, 1074
BfaI	CTAG	1 cut(s)	1172
BfmI	CTRYAG	2 cut(s)	265, 1126
BfoI	RGCGCY	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	1079
BfuI	GTATCC	1 cut(s)	178
Bme1390I	CCNGG	4 cut(s)	57, 255, 804, 938
Bme18I	GGWCC	2 cut(s)	374, 1097
BmgT120I	GGNCC	3 cut(s)	374, 1097, 1260
BmiI	GGNNCC	6 cut(s)	6, 252, 316, 565, 612, 624
BmrFI	CCNGG	4 cut(s)	57, 255, 804, 938
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	981, 1011
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	3 cut(s)	305, 386, 941
BpuEI	CTTGAG	2 cut(s)	193, 890
BsaAI	YACGTR	1 cut(s)	1191
BsaBI	GATNNNNATC	2 cut(s)	425, 495
BsaHI	GRCGYC	1 cut(s)	1203
BsaJI	CCNNGG	3 cut(s)	254, 802, 857
Bsc4I	CCNNNNNNNGG	5 cut(s)	383, 607, 773, 1106, 1269
Bse1I	ACTGG	7 cut(s)	45, 398, 514, 644, 958, 1050, 1100
Bse21I	CCTNAGG	2 cut(s)	9, 543
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	2 cut(s)	425, 495
BseBI	CCWGG	4 cut(s)	57, 255, 804, 938
BseDI	CCNNGG	3 cut(s)	254, 802, 857
BseGI	GGATG	4 cut(s)	597, 701, 819, 1286
BseJI	GATNNNNATC	2 cut(s)	425, 495
BseLI	CCNNNNNNNGG	5 cut(s)	383, 607, 773, 1106, 1269
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	4 cut(s)	23, 527, 557, 1255
BseNI	ACTGG	7 cut(s)	45, 398, 514, 644, 958, 1050, 1100
BseRI	GAGGAG	1 cut(s)	944
BsgI	GTGCAG	1 cut(s)	572
BshFI	GGCC	3 cut(s)	841, 1049, 1261
BsiHKAI	GWGCWC	1 cut(s)	954
BsiSI	CCGG	1 cut(s)	1270
BslFI	GGGAC	2 cut(s)	143, 367
BslI	CCNNNNNNNGG	5 cut(s)	383, 607, 773, 1106, 1269
BsmAI	GTCTC	3 cut(s)	597, 891, 1074
BsmFI	GGGAC	2 cut(s)	143, 367
BsmI	GAATGC	2 cut(s)	95, 938
BsnI	GGCC	3 cut(s)	841, 1049, 1261
Bsp1286I	GDGCHC	2 cut(s)	317, 954
Bsp143I	GATC	8 cut(s)	4, 490, 496, 622, 664, 715, 829, 1237
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	7 cut(s)	620, 970, 1040, 1043, 1046, 1206, 1267
BspANI	GGCC	3 cut(s)	841, 1049, 1261
BspCNI	CTCAG	4 cut(s)	22, 528, 556, 1254
BspHI	TCATGA	1 cut(s)	1119
BspLI	GGNNCC	6 cut(s)	6, 252, 316, 565, 612, 624
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	6 cut(s)	12, 485, 491, 617, 630, 824
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	7 cut(s)	45, 398, 514, 644, 958, 1050, 1100
BssECI	CCNNGG	3 cut(s)	254, 802, 857
BssMI	GATC	8 cut(s)	4, 490, 496, 622, 664, 715, 829, 1237
BssNI	GRCGYC	1 cut(s)	1203
BssT1I	CCWWGG	1 cut(s)	857
Bst2UI	CCWGG	4 cut(s)	57, 255, 804, 938
Bst4CI	ACNGT	3 cut(s)	269, 323, 848
Bst6I	CTCTTC	3 cut(s)	106, 178, 676
BstACI	GRCGYC	1 cut(s)	1203
BstBAI	YACGTR	1 cut(s)	1191
BstC8I	GCNNGC	3 cut(s)	839, 1026, 1157
BstDEI	CTNAG	6 cut(s)	9, 163, 536, 543, 629, 1241
BstDSI	CCRYGG	1 cut(s)	857
BstEII	GGTNACC	1 cut(s)	703
BstF5I	GGATG	4 cut(s)	597, 701, 819, 1286
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	8 cut(s)	7, 493, 499, 625, 667, 718, 832, 1240
BstMAI	GTCTC	3 cut(s)	597, 891, 1074
BstMBI	GATC	8 cut(s)	4, 490, 496, 622, 664, 715, 829, 1237
BstMWI	GCNNNNNNNGC	7 cut(s)	737, 918, 1037, 1040, 1046, 1071, 1226
BstNI	CCWGG	4 cut(s)	57, 255, 804, 938
BstNSI	RCATGY	2 cut(s)	1187, 1257
BstPI	GGTNACC	1 cut(s)	703
BstSCI	CCNGG	4 cut(s)	55, 253, 802, 936
BstSFI	CTRYAG	2 cut(s)	265, 1126
BstX2I	RGATCY	3 cut(s)	4, 490, 622
BstXI	CCANNNNNNTGG	2 cut(s)	810, 1216
BstYI	RGATCY	3 cut(s)	4, 490, 622
Bsu36I	CCTNAGG	2 cut(s)	9, 543
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	3 cut(s)	841, 1049, 1261
BtgI	CCRYGG	1 cut(s)	857
BtsCI	GGATG	4 cut(s)	597, 701, 819, 1286
BtsI	GCAGTG	2 cut(s)	951, 1081
BtsIMutI	CAGTG	5 cut(s)	38, 319, 405, 951, 1081
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	3 cut(s)	839, 1026, 1157
CaiI	CAGNNNCTG	2 cut(s)	650, 1232
CciI	TCATGA	1 cut(s)	1119
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	374, 1097, 1260
CseI	GACGC	2 cut(s)	141, 1211
Csp6I	GTAC	1 cut(s)	1166
CviQI	GTAC	1 cut(s)	1166
DdeI	CTNAG	6 cut(s)	9, 163, 536, 543, 629, 1241
DpnI	GATC	8 cut(s)	6, 492, 498, 624, 666, 717, 831, 1239
DpnII	GATC	8 cut(s)	4, 490, 496, 622, 664, 715, 829, 1237
EaeI	YGGCCR	1 cut(s)	1047
Eam1104I	CTCTTC	3 cut(s)	106, 178, 676
EarI	CTCTTC	3 cut(s)	106, 178, 676
EciI	GGCGGA	1 cut(s)	1256
Ecl136II	GAGCTC	1 cut(s)	952
Eco130I	CCWWGG	1 cut(s)	857
Eco147I	AGGCCT	1 cut(s)	841
Eco24I	GRGCYC	2 cut(s)	317, 954
Eco47I	GGWCC	2 cut(s)	374, 1097
Eco47III	AGCGCT	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	952
Eco57I	CTGAAG	2 cut(s)	89, 198
Eco81I	CCTNAGG	2 cut(s)	9, 543
Eco91I	GGTNACC	1 cut(s)	703
EcoICRI	GAGCTC	1 cut(s)	952
EcoO109I	RGGNCCY	1 cut(s)	1260
EcoO65I	GGTNACC	1 cut(s)	703
EcoRII	CCWGG	4 cut(s)	55, 253, 802, 936
EcoT14I	CCWWGG	1 cut(s)	857
EcoT22I	ATGCAT	1 cut(s)	97
EcoT38I	GRGCYC	2 cut(s)	317, 954
ErhI	CCWWGG	1 cut(s)	857
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	2 cut(s)	143, 367
FokI	GGATG	4 cut(s)	584, 708, 826, 1273
FriOI	GRGCYC	2 cut(s)	317, 954
FspBI	CTAG	1 cut(s)	1172
GlaI	GCGC	1 cut(s)	66
GsuI	CTGGAG	3 cut(s)	305, 386, 941
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	841, 1049, 1261
HapII	CCGG	1 cut(s)	1270
HgaI	GACGC	2 cut(s)	141, 1211
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	1203
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	8 cut(s)	52, 88, 135, 191, 227, 538, 671, 899
HpaII	CCGG	1 cut(s)	1270
HphI	GGTGA	1 cut(s)	715
Hpy188I	TCNGA	8 cut(s)	76, 178, 232, 431, 602, 676, 931, 964
Hpy188III	TCNNGA	7 cut(s)	284, 377, 494, 668, 827, 1120, 1279
HpyAV	CCTTC	7 cut(s)	137, 304, 383, 694, 932, 1273, 1300
HpyCH4III	ACNGT	3 cut(s)	269, 323, 848
HpyCH4IV	ACGT	1 cut(s)	1190
HpyF10VI	GCNNNNNNNGC	7 cut(s)	737, 918, 1037, 1040, 1046, 1071, 1226
HpyF3I	CTNAG	6 cut(s)	9, 163, 536, 543, 629, 1241
HpySE526I	ACGT	1 cut(s)	1190
Hsp92I	GRCGYC	1 cut(s)	1203
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	8 cut(s)	4, 490, 496, 622, 664, 715, 829, 1237
LmnI	GCTCC	5 cut(s)	320, 569, 806, 949, 957
LweI	GCATC	2 cut(s)	981, 1011
MaeI	CTAG	1 cut(s)	1172
MaeII	ACGT	1 cut(s)	1190
MaeIII	GTNAC	3 cut(s)	526, 703, 1186
MalI	GATC	8 cut(s)	6, 492, 498, 624, 666, 717, 831, 1239
MboI	GATC	8 cut(s)	4, 490, 496, 622, 664, 715, 829, 1237
MboII	GAAGA	6 cut(s)	93, 165, 236, 319, 693, 1204
MflI	RGATCY	3 cut(s)	4, 490, 622
MhlI	GDGCHC	2 cut(s)	317, 954
MluCI	AATT	3 cut(s)	120, 348, 455
MlyI	GAGTC	2 cut(s)	547, 893
MmeI	TCCRAC	1 cut(s)	822
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	2 cut(s)	237, 570
MslI	CAYNNNNRTG	3 cut(s)	112, 324, 1214
MspA1I	CMGCKG	1 cut(s)	1229
MspI	CCGG	1 cut(s)	1270
MspR9I	CCNGG	4 cut(s)	57, 255, 804, 938
Mva1269I	GAATGC	2 cut(s)	95, 938
MvaI	CCWGG	4 cut(s)	57, 255, 804, 938
MwoI	GCNNNNNNNGC	7 cut(s)	737, 918, 1037, 1040, 1046, 1071, 1226
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	8 cut(s)	4, 490, 496, 622, 664, 715, 829, 1237
NlaIV	GGNNCC	6 cut(s)	6, 252, 316, 565, 612, 624
NmeAIII	GCCGAG	2 cut(s)	490, 707
NmuCI	GTSAC	2 cut(s)	526, 703
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	2 cut(s)	1187, 1257
OliI	CACNNNNGTG	1 cut(s)	324
PagI	TCATGA	1 cut(s)	1119
PceI	AGGCCT	1 cut(s)	841
PctI	GAATGC	2 cut(s)	95, 938
PfeI	GAWTC	6 cut(s)	52, 88, 135, 191, 227, 671
PflFI	GACNNNGTC	2 cut(s)	151, 524
PfoI	TCCNGGA	1 cut(s)	55
PleI	GAGTC	2 cut(s)	546, 893
PpsI	GAGTC	2 cut(s)	546, 893
Ppu21I	YACGTR	1 cut(s)	1191
PsiI	TTATAA	1 cut(s)	749
Psp124BI	GAGCTC	1 cut(s)	954
Psp6I	CCWGG	4 cut(s)	55, 253, 802, 936
PspEI	GGTNACC	1 cut(s)	703
PspGI	CCWGG	4 cut(s)	55, 253, 802, 936
PspN4I	GGNNCC	6 cut(s)	6, 252, 316, 565, 612, 624
PspPI	GGNCC	3 cut(s)	374, 1097, 1260
PstNI	CAGNNNCTG	2 cut(s)	650, 1232
PsuI	RGATCY	3 cut(s)	4, 490, 622
PsyI	GACNNNGTC	2 cut(s)	151, 524
PvuII	CAGCTG	1 cut(s)	1229
RsaI	GTAC	1 cut(s)	1167
RsaNI	GTAC	1 cut(s)	1166
RseI	CAYNNNNRTG	3 cut(s)	112, 324, 1214
SacI	GAGCTC	1 cut(s)	954
SaqAI	TTAA	2 cut(s)	237, 570
Sau3AI	GATC	8 cut(s)	4, 490, 496, 622, 664, 715, 829, 1237
Sau96I	GGNCC	3 cut(s)	374, 1097, 1260
SchI	GAGTC	2 cut(s)	547, 893
ScrFI	CCNGG	4 cut(s)	57, 255, 804, 938
SduI	GDGCHC	2 cut(s)	317, 954
SfaNI	GCATC	2 cut(s)	981, 1011
SfcI	CTRYAG	2 cut(s)	265, 1126
SinI	GGWCC	2 cut(s)	374, 1097
SmiMI	CAYNNNNRTG	3 cut(s)	112, 324, 1214
SmlI	CTYRAG	2 cut(s)	208, 869
SmoI	CTYRAG	2 cut(s)	208, 869
Sse9I	AATT	3 cut(s)	120, 348, 455
SseBI	AGGCCT	1 cut(s)	841
SsiI	CCGC	7 cut(s)	620, 970, 1040, 1043, 1046, 1206, 1267
SspMI	CTAG	1 cut(s)	1172
SstI	GAGCTC	1 cut(s)	954
StuI	AGGCCT	1 cut(s)	841
StyD4I	CCNGG	4 cut(s)	55, 253, 802, 936
StyI	CCWWGG	1 cut(s)	857
TaaI	ACNGT	3 cut(s)	269, 323, 848
TaiI	ACGT	1 cut(s)	1193
TaqI	TCGA	2 cut(s)	130, 669
TasI	AATT	3 cut(s)	120, 348, 455
TauI	GCSGC	4 cut(s)	1043, 1046, 1049, 1208
TfiI	GAWTC	6 cut(s)	52, 88, 135, 191, 227, 671
Tru1I	TTAA	2 cut(s)	237, 570
Tru9I	TTAA	2 cut(s)	237, 570
TscAI	CASTG	5 cut(s)	45, 326, 405, 951, 1081
TseFI	GTSAC	2 cut(s)	526, 703
Tsp45I	GTSAC	2 cut(s)	526, 703
TspDTI	ATGAA	5 cut(s)	80, 461, 586, 991, 1204
TspGWI	ACGGA	1 cut(s)	892
TspRI	CASTG	5 cut(s)	45, 326, 405, 951, 1081
Tth111I	GACNNNGTC	2 cut(s)	151, 524
VpaK11BI	GGWCC	2 cut(s)	374, 1097
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	2 cut(s)	1187, 1257
XspI	CTAG	1 cut(s)	1172
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.