AT5G17820

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006757
Physical Location & Seq
Reverse (-)
5887871 .. 5890260
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17820.1

Sequence Viewer

Length: 942 bp
ATGATGAAGGGTGCCAAGTTTTCATCTCTTCTTGTGCTTTTCTTTATTTTTCCGATCGCATTTGCTCAACTGAGAGTCGGGTTTTATAGTCAATCATGCCCTCAAGCCGAGACTATCGTACGCAATCTGGTGCGCCAACGGTTTGGTGTTACCCCAACCGTTACCGCCGCTTTGCTCCGTATGCATTTCCACGACTGTTTCGTTAAGGGCTGTGACGCTTCTCTCCTCATTGATTCAACCAATTCCGAGAAAACTGCTGGACCAAACGGAAGCGTCAGGGAATTTGACCTGATAGACCGGATCAAGGCTCAGCTAGAAGCTGCATGCCCTTCCACAGTCTCATGTGCTGACATCGTCACATTGGCCACACGTGACTCGGTGGCCTTAGCCGGAGGCCCAAGCTACAGCATCCCCACGGGAAGGCGTGACGGTAGGGTCTCAAACAATCTTGATGTAACCTTACCGGGTCCAACGATCTCCGTCTCTGGAGCCGTGAGTTTATTCACGAACAAAGGGATGAACACGTTCGATGCAGTAGCTCTTTTGGGTGCACACACTGTTGGTCAAGGAAATTGTGGTCTCTTTAGTGACAGAATCACTAGCTTCCAAGGAACTGGACGACCGGACCCGTCCATGGACCCCGCTTTGGTTACCAGCCTAAGGAACACATGCAGAAATAGCGCGACGGCGGCACTAGACCAGTCGAGTCCATTGAGATTCGACAACCAGTTCTTCAAGCAAATCCGTAAAAGGAGAGGAGTGTTGCAAGTTGACCAACGCCTCGCATCCGACCCACAGACTCGTGGGATTGTGGCTCGGTATGCTAATAACAACGCCTTCTTCAAGCGTCAGTTCGTTAGAGCAATGGTGAAGATGGGAGCAGTTGATGTGCTTACTGGTCGTAACGGTGAGATCAGAAGGAACTGCAGGAGATTCAACTAA

Protein Analysis

313

Amino Acids

34.1

Weight (kDa)

10.1

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 277 3.1e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
AccB1I GGYRCC 1 cut(s) 11
AccII CGCG 1 cut(s) 683
AciI CCGC 4 cut(s) 165, 168, 642, 689
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 281
AcvI CACGTG 1 cut(s) 371
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 5 cut(s) 304, 420, 634, 646, 660
AflIII ACRYGT 2 cut(s) 368, 522
AgsI TTSAA 4 cut(s) 237, 736, 844, 937
AluBI AGCT 5 cut(s) 313, 320, 402, 539, 603
AluI AGCT 5 cut(s) 313, 320, 402, 539, 603
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 5 cut(s) 104, 343, 442, 487, 584
Alw44I GTGCAC 1 cut(s) 549
AlwI GGATC 1 cut(s) 308
AoxI GGCC 3 cut(s) 363, 381, 394
ApaLI GTGCAC 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 524
AspLEI GCGC 2 cut(s) 135, 683
AspS9I GGNCC 5 cut(s) 260, 395, 467, 625, 637
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 2 cut(s) 880, 920
AvaII GGWCC 4 cut(s) 260, 467, 625, 637
AxyI CCTNAGG 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 553
BalI TGGCCA 1 cut(s) 365
BanI GGYRCC 1 cut(s) 11
BauI CACGAG 1 cut(s) 801
BbrPI CACGTG 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 868
BceAI ACGGC 2 cut(s) 476, 702
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 5 cut(s) 104, 343, 442, 487, 584
BfaI CTAG 3 cut(s) 314, 600, 695
BfmI CTRYAG 2 cut(s) 403, 925
BisI GCNGC 3 cut(s) 168, 321, 690
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 3 cut(s) 169, 322, 691
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 4 cut(s) 260, 467, 625, 637
BmgT120I GGNCC 5 cut(s) 260, 395, 467, 625, 637
BmiI GGNNCC 5 cut(s) 13, 468, 490, 627, 639
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 3 cut(s) 417, 520, 794
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 385
Bpu1102I GCTNAGC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 465
BsaAI YACGTR 1 cut(s) 371
BsaI GGTCTC 2 cut(s) 442, 584
BsaJI CCNNGG 3 cut(s) 414, 607, 633
BsaWI WCCGGW 2 cut(s) 297, 622
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 420, 634, 646, 660
Bse1I ACTGG 4 cut(s) 619, 700, 727, 901
Bse21I CCTNAGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 870
BseDI CCNNGG 3 cut(s) 414, 607, 633
BseGI GGATG 3 cut(s) 408, 522, 785
BseLI CCNNNNNNNGG 5 cut(s) 304, 420, 634, 646, 660
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 2 cut(s) 62, 323
BseNI ACTGG 4 cut(s) 619, 700, 727, 901
BseRI GAGGAG 2 cut(s) 215, 771
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 683
Bsh1285I CGRYCG 2 cut(s) 57, 623
BshFI GGCC 3 cut(s) 365, 383, 396
BshNI GGYRCC 1 cut(s) 11
BsiEI CGRYCG 2 cut(s) 57, 623
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 4 cut(s) 298, 390, 464, 623
BsiWI CGTACG 1 cut(s) 118
BslI CCNNNNNNNGG 5 cut(s) 304, 420, 634, 646, 660
BsmAI GTCTC 5 cut(s) 104, 343, 442, 487, 584
BsmBI CGTCTC 1 cut(s) 487
BsnI GGCC 3 cut(s) 365, 383, 396
Bso31I GGTCTC 2 cut(s) 442, 584
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 4 cut(s) 54, 300, 474, 912
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 4 cut(s) 165, 168, 642, 689
BspANI GGCC 3 cut(s) 365, 383, 396
BspCNI CTCAG 2 cut(s) 63, 322
BspFNI CGCG 1 cut(s) 683
BspLI GGNNCC 5 cut(s) 13, 468, 490, 627, 639
BspMAI CTGCAG 1 cut(s) 929
BspPI GGATC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 11
BspTNI GGTCTC 2 cut(s) 442, 584
BsrDI GCAATG 1 cut(s) 870
BsrI ACTGG 4 cut(s) 619, 700, 727, 901
BssECI CCNNGG 3 cut(s) 414, 607, 633
BssMI GATC 4 cut(s) 54, 300, 474, 912
BssSI CACGAG 1 cut(s) 801
BssT1I CCWWGG 2 cut(s) 607, 633
Bst2BI CACGAG 1 cut(s) 801
Bst4CI ACNGT 7 cut(s) 141, 160, 197, 337, 431, 559, 908
Bst6I CTCTTC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 4 cut(s) 71, 309, 385, 659
BstDSI CCRYGG 2 cut(s) 414, 633
BstEII GGTNACC 1 cut(s) 649
BstF5I GGATG 3 cut(s) 408, 522, 785
BstFNI CGCG 1 cut(s) 683
BstHHI GCGC 2 cut(s) 135, 683
BstKTI GATC 4 cut(s) 57, 303, 477, 915
BstMAI GTCTC 5 cut(s) 104, 343, 442, 487, 584
BstMBI GATC 4 cut(s) 54, 300, 474, 912
BstMCI CGRYCG 2 cut(s) 57, 623
BstMWI GCNNNNNNNGC 4 cut(s) 181, 678, 689, 821
BstNSI RCATGY 2 cut(s) 327, 672
BstPI GGTNACC 1 cut(s) 649
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 2 cut(s) 403, 925
BstSLI GKGCMC 1 cut(s) 553
BstUI CGCG 1 cut(s) 683
BstV1I GCAGC 1 cut(s) 307
BstXI CCANNNNNNTGG 2 cut(s) 143, 614
Bsu36I CCTNAGG 1 cut(s) 659
BsuRI GGCC 3 cut(s) 365, 383, 396
BtgI CCRYGG 2 cut(s) 414, 633
BtsCI GGATG 3 cut(s) 408, 522, 785
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 1 cut(s) 325
CfoI GCGC 2 cut(s) 135, 683
Cfr13I GGNCC 5 cut(s) 260, 395, 467, 625, 637
CseI GACGC 3 cut(s) 224, 262, 836
Csp6I GTAC 1 cut(s) 119
CviAII CATG 5 cut(s) 96, 324, 342, 634, 669
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 4 cut(s) 71, 309, 385, 659
DpnI GATC 4 cut(s) 56, 302, 476, 914
DpnII GATC 4 cut(s) 54, 300, 474, 912
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 607, 633
Eco31I GGTCTC 2 cut(s) 442, 584
Eco47I GGWCC 4 cut(s) 260, 467, 625, 637
Eco72I CACGTG 1 cut(s) 371
Eco81I CCTNAGG 1 cut(s) 659
Eco91I GGTNACC 1 cut(s) 649
EcoO65I GGTNACC 1 cut(s) 649
EcoT14I CCWWGG 2 cut(s) 607, 633
EcoT22I ATGCAT 1 cut(s) 186
ErhI CCWWGG 2 cut(s) 607, 633
Esp3I CGTCTC 1 cut(s) 487
FaeI CATG 5 cut(s) 99, 327, 345, 637, 672
FaiI YATR 8 cut(s) 87, 97, 182, 325, 343, 635, 670, 822
FatI CATG 5 cut(s) 95, 323, 341, 633, 668
FauI CCCGC 1 cut(s) 649
Fnu4HI GCNGC 3 cut(s) 168, 321, 690
FokI GGATG 3 cut(s) 395, 529, 772
Fsp4HI GCNGC 3 cut(s) 168, 321, 690
FspBI CTAG 3 cut(s) 314, 600, 695
GlaI GCGC 2 cut(s) 134, 682
GluI GCNGC 3 cut(s) 168, 321, 690
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 3 cut(s) 365, 383, 396
HapII CCGG 4 cut(s) 298, 390, 464, 623
HgaI GACGC 3 cut(s) 224, 262, 836
HhaI GCGC 2 cut(s) 135, 683
Hin1II CATG 5 cut(s) 99, 327, 345, 637, 672
Hin6I GCGC 2 cut(s) 133, 681
HinP1I GCGC 2 cut(s) 133, 681
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 8 cut(s) 75, 233, 374, 594, 706, 717, 799, 933
HpaII CCGG 4 cut(s) 298, 390, 464, 623
HphI GGTGA 2 cut(s) 880, 920
Hpy166II GTNNAC 2 cut(s) 551, 772
Hpy188I TCNGA 4 cut(s) 54, 247, 790, 917
Hpy188III TCNNGA 3 cut(s) 449, 486, 505
Hpy8I GTNNAC 2 cut(s) 551, 772
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 4 cut(s) 339, 414, 847, 912
HpyCH4III ACNGT 7 cut(s) 141, 160, 197, 337, 431, 559, 908
HpyCH4IV ACGT 2 cut(s) 370, 524
HpyCH4V TGCA 7 cut(s) 184, 323, 533, 551, 672, 766, 927
HpyF10VI GCNNNNNNNGC 4 cut(s) 181, 678, 689, 821
HpyF3I CTNAG 4 cut(s) 71, 309, 385, 659
HpySE526I ACGT 2 cut(s) 370, 524
Hsp92II CATG 5 cut(s) 99, 327, 345, 637, 672
HspAI GCGC 2 cut(s) 133, 681
Kzo9I GATC 4 cut(s) 54, 300, 474, 912
LmnI GCTCC 3 cut(s) 180, 488, 878
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 3 cut(s) 417, 520, 794
MaeI CTAG 3 cut(s) 314, 600, 695
MaeII ACGT 2 cut(s) 370, 524
MalI GATC 4 cut(s) 56, 302, 476, 914
MboI GATC 4 cut(s) 54, 300, 474, 912
MboII GAAGA 4 cut(s) 20, 724, 832, 883
MhlI GDGCHC 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 3 cut(s) 241, 281, 571
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 4 cut(s) 84, 368, 715, 793
MmeI TCCRAC 2 cut(s) 494, 813
MnlI CCTC 5 cut(s) 111, 236, 386, 749, 791
Mox20I TGGCCA 1 cut(s) 365
Mph1103I ATGCAT 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 524
MscI TGGCCA 1 cut(s) 365
MseI TTAA 1 cut(s) 204
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 4 cut(s) 298, 390, 464, 623
MspR9I CCNGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 683
MwoI GCNNNNNNNGC 4 cut(s) 181, 678, 689, 821
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 1 cut(s) 633
NdeII GATC 4 cut(s) 54, 300, 474, 912
NlaIII CATG 5 cut(s) 99, 327, 345, 637, 672
NlaIV GGNNCC 5 cut(s) 13, 468, 490, 627, 639
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 5 cut(s) 212, 355, 371, 425, 587
NsiI ATGCAT 1 cut(s) 186
NspI RCATGY 2 cut(s) 327, 672
PaeI GCATGC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 4 cut(s) 233, 594, 717, 933
Pfl23II CGTACG 1 cut(s) 118
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 3 cut(s) 169, 322, 691
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 4 cut(s) 83, 368, 714, 793
PmaCI CACGTG 1 cut(s) 371
PmlI CACGTG 1 cut(s) 371
PpsI GAGTC 4 cut(s) 83, 368, 714, 793
Ppu21I YACGTR 1 cut(s) 371
PspCI CACGTG 1 cut(s) 371
PspEI GGTNACC 1 cut(s) 649
PspLI CGTACG 1 cut(s) 118
PspN4I GGNNCC 5 cut(s) 13, 468, 490, 627, 639
PspPI GGNCC 5 cut(s) 260, 395, 467, 625, 637
PstI CTGCAG 1 cut(s) 929
PsyI GACNNNGTC 1 cut(s) 353
PvuI CGATCG 1 cut(s) 57
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 168, 321, 690
Sau3AI GATC 4 cut(s) 54, 300, 474, 912
Sau96I GGNCC 5 cut(s) 260, 395, 467, 625, 637
SchI GAGTC 4 cut(s) 84, 368, 715, 793
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 553
SetI ASST 9 cut(s) 291, 315, 322, 373, 404, 461, 527, 541, 605
SfaNI GCATC 3 cut(s) 417, 520, 794
SfcI CTRYAG 2 cut(s) 403, 925
SinI GGWCC 4 cut(s) 260, 467, 625, 637
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
SphI GCATGC 1 cut(s) 327
Sse9I AATT 3 cut(s) 241, 281, 571
SsiI CCGC 4 cut(s) 165, 168, 642, 689
SspMI CTAG 3 cut(s) 314, 600, 695
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 2 cut(s) 607, 633
TaaI ACNGT 7 cut(s) 141, 160, 197, 337, 431, 559, 908
TaiI ACGT 2 cut(s) 373, 527
TaqI TCGA 3 cut(s) 528, 704, 720
TasI AATT 3 cut(s) 241, 281, 571
TauI GCSGC 2 cut(s) 170, 692
TfiI GAWTC 4 cut(s) 233, 594, 717, 933
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 5 cut(s) 212, 355, 371, 425, 587
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 5 cut(s) 212, 355, 371, 425, 587
TspDTI ATGAA 3 cut(s) 12, 20, 533
TspGWI ACGGA 4 cut(s) 167, 282, 469, 734
TspRI CASTG 1 cut(s) 562
Tth111I GACNNNGTC 1 cut(s) 353
VneI GTGCAC 1 cut(s) 549
VpaK11BI GGWCC 4 cut(s) 260, 467, 625, 637
XapI RAATTY 1 cut(s) 281
XceI RCATGY 2 cut(s) 327, 672
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 3 cut(s) 314, 600, 695
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.