Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003613.1

Orthogroup ID

OG0006757

Physical Location & Seq

Genomic Coordinates Forward (+)

71002 .. 72118

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003613.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgagaatagaggcctcattcttggcctttttctttcttcttcctctagcagtggctgacttacgggttggtttctacagtgctagctgcccaaaagccgaacaaattgtacaacaagtcgtccagaaaaaattctccagtgatcgatctataactgctgctttgcttcgcatgcacttccatgactgctttgttagaggttgtgatgcttccatccttattgactccaccaataagaagaagtctgaaaaaaccgcaggaccaaacttgactgtaagagggtttgaggtcatcgacgaggccaagaaagcacttgaggctgcatgcccgtcaacagtctcctgtgctgatatcatcaccctcgcgactagagattcagtggttctagccggtggccctagctacaactcacccaccggacggcgtgatggcctagtatcgaatcccaatgacgtcaacttacctggtccgtccttttccgtgtctcaggcattgcagtctttcacggccaagggaatgactctgaacgatatggtgactcttttgggtgcacacaccgttggtgttgcgcactgtagcttttttgaagataggctttccaactttcaggggactgggtctccggatccttcaatggacccagctctggttaccaagttgaaaaagatctgtggaggacctaatgaccctactgcatttttggaccaaaatacatcatttgcctttgataatcaattctataaccaggtcaatttgaagagaggtgtgatgcagattgaccaggagctaggtgtggacaagtcaacggctggtattgtttctgggtttgcttccaatggtggcagattcagtcagagttttgcaactgctatgttgaagatgggcagccttcaggatggaaatgctggtgaaataaggaaaaattgtagagcttttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

313

Amino Acids

33.56

Weight (kDa)

8.09

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03670 AT4G26010 AT4G26010 AT5G17820 AT5G17820
fragaria_vesca	FvH4_2g05370
malus_domestica	MD14G1010300.v1.1
prunus_persica	Prupe.7G016500_v2.0.a1
pyrus_communis	pycom14g00870
rosa_chinensis	RchiOBHm_Chr3g0495941 RchiOBHm_Chr3g0495951
rosa_laevigata	RLG00000022577
rosa_multiflora	Rmu_sc0000334.1_g000004 Rmu_sc0000334.1_g000021 Rmu_sc0003613.1_g000015
rosa_roxburghii	Rroxscaffold_6G00389830 Rroxscaffold_6G00389880
rosa_rugosa	Rorug03G0277900
rosa_samantha	Rh3AG325200 Rh3BG361300 Rh3BG361500 Rh3CG357500 Rh3CG357600 Rh3DG360700
rosa_wichuraiana	Rw3G028410 Rw3G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	456
Acc16I	TGCGCA	1 cut(s)	570
AccII	CGCG	1 cut(s)	365
AccIII	TCCGGA	1 cut(s)	622
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	620, 633
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	875
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	420, 646
AgsI	TTSAA	5 cut(s)	587, 633, 661, 757, 877
AjnI	CCWGG	3 cut(s)	463, 744, 780
AluBI	AGCT	6 cut(s)	87, 402, 579, 644, 787, 932
AluI	AGCT	6 cut(s)	87, 402, 579, 644, 787, 932
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	3 cut(s)	343, 489, 624
Alw44I	GTGCAC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	620, 633
AlwNI	CAGNNNCTG	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	622
AoxI	GGCC	6 cut(s)	12, 24, 300, 394, 430, 507
ApaLI	GTGCAC	1 cut(s)	549
ApeKI	GCWGC	4 cut(s)	87, 158, 320, 885
ApoI	RAATTY	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	6 cut(s)	260, 395, 467, 637, 677, 703
AsuHPI	GGTGA	4 cut(s)	349, 402, 547, 920
AsuNHI	GCTAGC	1 cut(s)	83
AvaII	GGWCC	5 cut(s)	260, 467, 637, 677, 703
BaeGI	GKGCMC	1 cut(s)	553
BamHI	GGATCC	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	4 cut(s)	74, 145, 307, 897
BccI	CCATC	4 cut(s)	221, 422, 874, 890
BceAI	ACGGC	3 cut(s)	437, 522, 822
BciT130I	CCWGG	3 cut(s)	465, 746, 782
BcoDI	GTCTC	3 cut(s)	343, 489, 624
BfaI	CTAG	7 cut(s)	47, 84, 369, 386, 399, 434, 788
BfmI	CTRYAG	2 cut(s)	76, 574
BglII	AGATCT	1 cut(s)	666
BisI	GCNGC	4 cut(s)	88, 159, 321, 886
BlsI	GCNGC	4 cut(s)	89, 160, 322, 887
Bme1390I	CCNGG	3 cut(s)	465, 746, 782
Bme18I	GGWCC	5 cut(s)	260, 467, 637, 677, 703
BmgT120I	GGNCC	6 cut(s)	260, 395, 467, 637, 677, 703
BmiI	GGNNCC	2 cut(s)	627, 639
BmrFI	CCNGG	3 cut(s)	465, 746, 782
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	2 cut(s)	196, 759
BmtI	GCTAGC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	624
BpmI	CTGGAG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	2 cut(s)	416, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	420, 646
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	138, 619
Bse3DI	GCAATG	1 cut(s)	491
BseAI	TCCGGA	1 cut(s)	622
BseBI	CCWGG	3 cut(s)	465, 746, 782
BseCI	ATCGAT	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	213, 901
BseLI	CCNNNNNNNGG	2 cut(s)	420, 646
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	2 cut(s)	138, 619
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	4 cut(s)	74, 145, 307, 897
BseYI	CCCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	6 cut(s)	14, 26, 302, 396, 432, 509
BshVI	ATCGAT	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	3 cut(s)	390, 417, 623
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	2 cut(s)	420, 646
BsmAI	GTCTC	3 cut(s)	343, 489, 624
BsmFI	GGGAC	1 cut(s)	625
BsnI	GGCC	6 cut(s)	14, 26, 302, 396, 432, 509
Bso31I	GGTCTC	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp13I	TCCGGA	1 cut(s)	622
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	142, 146, 625, 666
Bsp68I	TCGCGA	1 cut(s)	365
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	6 cut(s)	14, 26, 302, 396, 432, 509
BspCNI	CTCAG	1 cut(s)	499
BspDI	ATCGAT	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	2 cut(s)	627, 639
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	620, 633
BspTNI	GGTCTC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	138, 619
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	4 cut(s)	142, 146, 625, 666
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	3 cut(s)	465, 746, 782
Bst4CI	ACNGT	5 cut(s)	80, 274, 337, 559, 575
Bst6I	CTCTTC	1 cut(s)	752
BstACI	GRCGYC	1 cut(s)	453
BstAUI	TGTACA	1 cut(s)	109
BstC8I	GCNNGC	3 cut(s)	85, 173, 325
BstDEI	CTNAG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	213, 901
BstFNI	CGCG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	4 cut(s)	145, 149, 628, 669
BstMAI	GTCTC	3 cut(s)	343, 489, 624
BstMBI	GATC	4 cut(s)	142, 146, 625, 666
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 308, 317
BstNI	CCWGG	3 cut(s)	465, 746, 782
BstNSI	RCATGY	2 cut(s)	175, 327
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	3 cut(s)	463, 744, 780
BstSFI	CTRYAG	2 cut(s)	76, 574
BstSLI	GKGCMC	1 cut(s)	553
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	4 cut(s)	74, 145, 307, 897
BstX2I	RGATCY	2 cut(s)	625, 666
BstYI	RGATCY	2 cut(s)	625, 666
Bsu15I	ATCGAT	1 cut(s)	145
BsuRI	GGCC	6 cut(s)	14, 26, 302, 396, 432, 509
BsuTUI	ATCGAT	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	213, 901
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	5 cut(s)	57, 85, 145, 384, 571
BtuMI	TCGCGA	1 cut(s)	365
Cac8I	GCNNGC	3 cut(s)	85, 173, 325
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	571
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	6 cut(s)	260, 395, 467, 637, 677, 703
ClaI	ATCGAT	1 cut(s)	145
CsiI	ACCWGGT	2 cut(s)	463, 744
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	3 cut(s)	172, 182, 324
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	4 cut(s)	144, 148, 627, 668
DpnII	GATC	4 cut(s)	142, 146, 625, 666
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Eco130I	CCWWGG	1 cut(s)	510
Eco147I	AGGCCT	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	624
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	5 cut(s)	260, 467, 637, 677, 703
Eco57I	CTGAAG	1 cut(s)	875
Eco91I	GGTNACC	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	677
EcoO65I	GGTNACC	1 cut(s)	649
EcoRII	CCWGG	3 cut(s)	463, 744, 780
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	3 cut(s)	175, 185, 327
FaiI	YATR	7 cut(s)	152, 173, 183, 325, 533, 741, 872
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	3 cut(s)	171, 181, 323
Fnu4HI	GCNGC	4 cut(s)	88, 159, 321, 886
FokI	GGATG	2 cut(s)	200, 908
Fsp4HI	GCNGC	4 cut(s)	88, 159, 321, 886
FspBI	CTAG	7 cut(s)	47, 84, 369, 386, 399, 434, 788
FspI	TGCGCA	1 cut(s)	570
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	4 cut(s)	88, 159, 321, 886
GsaI	CCCAGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	6 cut(s)	14, 26, 302, 396, 432, 509
HapII	CCGG	3 cut(s)	390, 417, 623
HhaI	GCGC	1 cut(s)	571
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	3 cut(s)	175, 185, 327
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HincII	GTYRAC	3 cut(s)	333, 457, 804
HindII	GTYRAC	3 cut(s)	333, 457, 804
HinfI	GANTC	6 cut(s)	224, 374, 442, 520, 538, 846
HpaII	CCGG	3 cut(s)	390, 417, 623
HphI	GGTGA	4 cut(s)	349, 402, 547, 920
Hpy166II	GTNNAC	5 cut(s)	333, 457, 551, 796, 804
Hpy188I	TCNGA	3 cut(s)	247, 525, 855
Hpy188III	TCNNGA	4 cut(s)	124, 364, 623, 893
Hpy8I	GTNNAC	5 cut(s)	333, 457, 551, 796, 804
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	2 cut(s)	639, 899
HpyCH4III	ACNGT	5 cut(s)	80, 274, 337, 559, 575
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	7 cut(s)	175, 323, 496, 551, 695, 772, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 308, 317
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	175, 185, 327
HspAI	GCGC	1 cut(s)	569
Kpn2I	TCCGGA	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	142, 146, 625, 666
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	4 cut(s)	74, 145, 307, 897
LweI	GCATC	2 cut(s)	196, 759
MabI	ACCWGGT	2 cut(s)	463, 744
MaeI	CTAG	7 cut(s)	47, 84, 369, 386, 399, 434, 788
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	2 cut(s)	535, 649
MalI	GATC	4 cut(s)	144, 148, 627, 668
MboI	GATC	4 cut(s)	142, 146, 625, 666
MboII	GAAGA	6 cut(s)	29, 32, 250, 599, 769, 889
MflI	RGATCY	2 cut(s)	625, 666
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	6 cut(s)	105, 131, 734, 751, 922, 937
MlyI	GAGTC	3 cut(s)	218, 514, 532
MmeI	TCCRAC	1 cut(s)	624
MroI	TCCGGA	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	2 cut(s)	936, 940
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	3 cut(s)	390, 417, 623
MspR9I	CCNGG	3 cut(s)	465, 746, 782
MvaI	CCWGG	3 cut(s)	465, 746, 782
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	172, 308, 317
NdeII	GATC	4 cut(s)	142, 146, 625, 666
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	3 cut(s)	175, 185, 327
NlaIV	GGNNCC	2 cut(s)	627, 639
NmuCI	GTSAC	1 cut(s)	535
NruI	TCGCGA	1 cut(s)	365
NsbI	TGCGCA	1 cut(s)	570
NspI	RCATGY	2 cut(s)	175, 327
PacI	TTAATTAA	1 cut(s)	940
PaeI	GCATGC	2 cut(s)	175, 327
PceI	AGGCCT	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	374, 442, 846
PflFI	GACNNNGTC	1 cut(s)	616
PkrI	GCNGC	4 cut(s)	89, 160, 322, 887
PleI	GAGTC	3 cut(s)	218, 514, 532
PpsI	GAGTC	3 cut(s)	218, 514, 532
PpuMI	RGGWCCY	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	677
Psp6I	CCWGG	3 cut(s)	463, 744, 780
PspEI	GGTNACC	1 cut(s)	649
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	3 cut(s)	463, 744, 780
PspN4I	GGNNCC	2 cut(s)	627, 639
PspPI	GGNCC	6 cut(s)	260, 395, 467, 637, 677, 703
PspPPI	RGGWCCY	1 cut(s)	677
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	2 cut(s)	625, 666
PsyI	GACNNNGTC	1 cut(s)	616
RruI	TCGCGA	1 cut(s)	365
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	936, 940
SatI	GCNGC	4 cut(s)	88, 159, 321, 886
Sau3AI	GATC	4 cut(s)	142, 146, 625, 666
Sau96I	GGNCC	6 cut(s)	260, 395, 467, 637, 677, 703
SchI	GAGTC	3 cut(s)	218, 514, 532
ScrFI	CCNGG	3 cut(s)	465, 746, 782
SduI	GDGCHC	1 cut(s)	553
SexAI	ACCWGGT	2 cut(s)	463, 744
SfaNI	GCATC	2 cut(s)	196, 759
SfcI	CTRYAG	2 cut(s)	76, 574
SinI	GGWCC	5 cut(s)	260, 467, 637, 677, 703
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	2 cut(s)	175, 327
Sse9I	AATT	6 cut(s)	105, 131, 734, 751, 922, 937
SseBI	AGGCCT	1 cut(s)	14
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	7 cut(s)	47, 84, 369, 386, 399, 434, 788
StuI	AGGCCT	1 cut(s)	14
StyD4I	CCNGG	3 cut(s)	463, 744, 780
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	5 cut(s)	80, 274, 337, 559, 575
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	3 cut(s)	145, 294, 440
TasI	AATT	6 cut(s)	105, 131, 734, 751, 922, 937
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	3 cut(s)	374, 442, 846
Tru1I	TTAA	2 cut(s)	936, 940
Tru9I	TTAA	2 cut(s)	936, 940
TscAI	CASTG	5 cut(s)	57, 85, 145, 384, 578
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	4 cut(s)	87, 158, 320, 885
Tsp45I	GTSAC	1 cut(s)	535
TspGWI	ACGGA	2 cut(s)	459, 469
TspRI	CASTG	5 cut(s)	57, 85, 145, 384, 578
Tth111I	GACNNNGTC	1 cut(s)	616
VneI	GTGCAC	1 cut(s)	549
VpaK11BI	GGWCC	5 cut(s)	260, 467, 637, 677, 703
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	2 cut(s)	175, 327
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	7 cut(s)	47, 84, 369, 386, 399, 434, 788
ZraI	GACGTC	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.