Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006757

Physical Location & Seq

Genomic Coordinates Forward (+)

3958313 .. 3959431

Gene Structure 1119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATGAGGATAGAGACCTCATTCTTAGCCTTTTTCTTTCTTCTTCCTCTAGCAGTGGCTGACTTACGGGTTGGACCAAACTTGACTGTAAGAGGGTTTGAGGTCATCGACGAGGCCAAGAAAGCACTTGAGGCTGCATGCCCGTCAACAGTCTCCTGTGCTGATATTATAACCCTCGCGACTAGAGATTCAGTGGTTCTAGCCGGTGGCCCGAGCTACAACTCACCCACCGGACGGCGTGACGGCCTAGTATCGAATCCCAATGACGTAAACTTACCTGGTCCGTCCTTTTCCGTGTCTCAGGCATTGCAGTCTTTCACGGCCAAGGGAATGACTCTGAACGATATGGTGACTCTTTTGGGTGCACACACCGTTGGTGTTGCGCACTGTAGCTTTTTTGAAGATAGGCTTTCCAACTTTCAGGGGACTGGGTCTCCCGATCCTTCAATGGACCCAGCTCTGGTTACCAAGTTGAAAAAGATCTGTGGAGGACCTAATGACCCTACTGCATTTTTGGACCAAAATACATCATTTGCCTTTGATAATCAATTCTATAACCAGGTTAATTTAAAGAGAGGTGTGATGCAGATTGACCAGGAGCTAGGTGTGGACAAGTCAACGGCTGGTATTGTTTCTGGGTTTGCTTCCAATGGTGGCAGATTCAGTCAGAGTTTTGCAACTGCTATGTTGAAGATGGGCAGCCTTCAGGATGGAAATGCTGGTGAAATCAGGAAAAATTGTAGAGCTTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

251

Amino Acids

26.72

Weight (kDa)

5.7

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	25 - 217	7.2e-66	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03670 AT4G26010 AT4G26010 AT5G17820 AT5G17820
fragaria_vesca	FvH4_2g05370
malus_domestica	MD14G1010300.v1.1
prunus_persica	Prupe.7G016500_v2.0.a1
pyrus_communis	pycom14g00870
rosa_chinensis	RchiOBHm_Chr3g0495941 RchiOBHm_Chr3g0495951
rosa_laevigata	RLG00000022577
rosa_multiflora	Rmu_sc0000334.1_g000004 Rmu_sc0000334.1_g000021 Rmu_sc0003613.1_g000015
rosa_roxburghii	Rroxscaffold_6G00389830 Rroxscaffold_6G00389880
rosa_rugosa	Rorug03G0277900
rosa_samantha	Rh3AG325200 Rh3BG361300 Rh3BG361500 Rh3CG357500 Rh3CG357600 Rh3DG360700
rosa_wichuraiana	Rw3G028410 Rw3G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
Acc16I	TGCGCA	1 cut(s)	384
AccII	CGCG	1 cut(s)	179
AclWI	GGATC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	321
AcuI	CTGAAG	1 cut(s)	689
AfiI	CCNNNNNNNGG	2 cut(s)	234, 460
AgsI	TTSAA	4 cut(s)	401, 447, 475, 691
AjnI	CCWGG	3 cut(s)	277, 558, 594
AluBI	AGCT	5 cut(s)	216, 393, 458, 601, 746
AluI	AGCT	5 cut(s)	216, 393, 458, 601, 746
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	4 cut(s)	8, 157, 303, 438
Alw44I	GTGCAC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	4 cut(s)	114, 208, 244, 321
ApaLI	GTGCAC	1 cut(s)	363
ApeKI	GCWGC	2 cut(s)	134, 699
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	6 cut(s)	74, 209, 281, 451, 491, 517
AsuHPI	GGTGA	3 cut(s)	216, 361, 734
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	5 cut(s)	74, 281, 451, 491, 517
BaeGI	GKGCMC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	121, 711
BccI	CCATC	2 cut(s)	688, 704
BceAI	ACGGC	4 cut(s)	251, 259, 336, 636
BciT130I	CCWGG	3 cut(s)	279, 560, 596
BcoDI	GTCTC	4 cut(s)	8, 157, 303, 438
BfaI	CTAG	5 cut(s)	50, 183, 200, 248, 602
BfmI	CTRYAG	1 cut(s)	388
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	2 cut(s)	135, 700
BlsI	GCNGC	2 cut(s)	136, 701
Bme1390I	CCNGG	3 cut(s)	279, 560, 596
Bme18I	GGWCC	5 cut(s)	74, 281, 451, 491, 517
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	6 cut(s)	74, 209, 281, 451, 491, 517
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	3 cut(s)	279, 560, 596
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	149
BsaI	GGTCTC	2 cut(s)	8, 438
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 460
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	3 cut(s)	279, 560, 596
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	2 cut(s)	234, 460
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	433
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	121, 711
BseYI	CCCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	116, 210, 246, 323
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	204, 231
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	234, 460
BsmAI	GTCTC	4 cut(s)	8, 157, 303, 438
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	4 cut(s)	116, 210, 246, 323
Bso31I	GGTCTC	2 cut(s)	8, 438
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	439, 480
Bsp68I	TCGCGA	1 cut(s)	179
BspANI	GGCC	4 cut(s)	116, 210, 246, 323
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	8, 438
BsrDI	GCAATG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	439, 480
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	3 cut(s)	279, 560, 596
Bst4CI	ACNGT	4 cut(s)	88, 151, 373, 389
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	25, 300
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	715
BstFNI	CGCG	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	442, 483
BstMAI	GTCTC	4 cut(s)	8, 157, 303, 438
BstMBI	GATC	2 cut(s)	439, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 131
BstNI	CCWGG	3 cut(s)	279, 560, 596
BstNSI	RCATGY	1 cut(s)	141
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	3 cut(s)	277, 558, 594
BstSFI	CTRYAG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	121, 711
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	4 cut(s)	116, 210, 246, 323
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	60, 198, 385
BtuMI	TCGCGA	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	139
CaiI	CAGNNNCTG	1 cut(s)	59
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	6 cut(s)	74, 209, 281, 451, 491, 517
CsiI	ACCWGGT	2 cut(s)	277, 558
CviAII	CATG	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	25, 300
DpnI	GATC	2 cut(s)	441, 482
DpnII	GATC	2 cut(s)	439, 480
DraI	TTTAAA	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	324
Eco31I	GGTCTC	2 cut(s)	8, 438
Eco47I	GGWCC	5 cut(s)	74, 281, 451, 491, 517
Eco57I	CTGAAG	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	211
Eco91I	GGTNACC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	463
EcoRII	CCWGG	3 cut(s)	277, 558, 594
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	1 cut(s)	141
FaiI	YATR	5 cut(s)	139, 170, 347, 555, 686
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	135, 700
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	2 cut(s)	135, 700
FspBI	CTAG	5 cut(s)	50, 183, 200, 248, 602
FspI	TGCGCA	1 cut(s)	384
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	2 cut(s)	135, 700
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	4 cut(s)	116, 210, 246, 323
HapII	CCGG	2 cut(s)	204, 231
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	141
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	2 cut(s)	147, 618
HindII	GTYRAC	2 cut(s)	147, 618
HinfI	GANTC	5 cut(s)	188, 256, 334, 352, 660
HpaII	CCGG	2 cut(s)	204, 231
HphI	GGTGA	3 cut(s)	216, 361, 734
Hpy166II	GTNNAC	5 cut(s)	147, 271, 365, 610, 618
Hpy188I	TCNGA	2 cut(s)	339, 669
Hpy188III	TCNNGA	4 cut(s)	178, 437, 707, 730
Hpy8I	GTNNAC	5 cut(s)	147, 271, 365, 610, 618
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	453, 713
HpyCH4III	ACNGT	4 cut(s)	88, 151, 373, 389
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	6 cut(s)	137, 310, 365, 509, 586, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 131
HpyF3I	CTNAG	2 cut(s)	25, 300
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	141
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	439, 480
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	2 cut(s)	121, 711
LweI	GCATC	1 cut(s)	573
MabI	ACCWGGT	2 cut(s)	277, 558
MaeI	CTAG	5 cut(s)	50, 183, 200, 248, 602
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	3 cut(s)	239, 349, 463
MalI	GATC	2 cut(s)	441, 482
MboI	GATC	2 cut(s)	439, 480
MboII	GAAGA	4 cut(s)	32, 35, 413, 703
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	4 cut(s)	548, 565, 736, 751
MlyI	GAGTC	2 cut(s)	328, 346
MmeI	TCCRAC	2 cut(s)	52, 438
MnlI	CCTC	9 cut(s)	28, 57, 86, 94, 106, 124, 185, 482, 569
MseI	TTAA	4 cut(s)	564, 569, 750, 754
MspI	CCGG	2 cut(s)	204, 231
MspR9I	CCNGG	3 cut(s)	279, 560, 596
MvaI	CCWGG	3 cut(s)	279, 560, 596
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	122, 131
NdeII	GATC	2 cut(s)	439, 480
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	2 cut(s)	239, 349
NruI	TCGCGA	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	384
NspI	RCATGY	1 cut(s)	141
PacI	TTAATTAA	1 cut(s)	754
PaeI	GCATGC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	188, 256, 660
PflFI	GACNNNGTC	1 cut(s)	430
PkrI	GCNGC	2 cut(s)	136, 701
PleI	GAGTC	2 cut(s)	328, 346
PpsI	GAGTC	2 cut(s)	328, 346
PpuMI	RGGWCCY	1 cut(s)	491
PsiI	TTATAA	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	3 cut(s)	277, 558, 594
PspEI	GGTNACC	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	3 cut(s)	277, 558, 594
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	6 cut(s)	74, 209, 281, 451, 491, 517
PspPPI	RGGWCCY	1 cut(s)	491
PstNI	CAGNNNCTG	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	480
PsyI	GACNNNGTC	1 cut(s)	430
RruI	TCGCGA	1 cut(s)	179
SaqAI	TTAA	4 cut(s)	564, 569, 750, 754
SatI	GCNGC	2 cut(s)	135, 700
Sau3AI	GATC	2 cut(s)	439, 480
Sau96I	GGNCC	6 cut(s)	74, 209, 281, 451, 491, 517
SchI	GAGTC	2 cut(s)	328, 346
ScrFI	CCNGG	3 cut(s)	279, 560, 596
SduI	GDGCHC	1 cut(s)	367
SexAI	ACCWGGT	2 cut(s)	277, 558
SfaNI	GCATC	1 cut(s)	573
SfcI	CTRYAG	1 cut(s)	388
SinI	GGWCC	5 cut(s)	74, 281, 451, 491, 517
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	4 cut(s)	548, 565, 736, 751
SspMI	CTAG	5 cut(s)	50, 183, 200, 248, 602
StyD4I	CCNGG	3 cut(s)	277, 558, 594
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	4 cut(s)	88, 151, 373, 389
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	108, 254
TasI	AATT	4 cut(s)	548, 565, 736, 751
TfiI	GAWTC	3 cut(s)	188, 256, 660
Tru1I	TTAA	4 cut(s)	564, 569, 750, 754
Tru9I	TTAA	4 cut(s)	564, 569, 750, 754
TscAI	CASTG	3 cut(s)	60, 198, 392
TseFI	GTSAC	2 cut(s)	239, 349
TseI	GCWGC	2 cut(s)	134, 699
Tsp45I	GTSAC	2 cut(s)	239, 349
TspGWI	ACGGA	2 cut(s)	273, 283
TspRI	CASTG	3 cut(s)	60, 198, 392
Tth111I	GACNNNGTC	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	363
VpaK11BI	GGWCC	5 cut(s)	74, 281, 451, 491, 517
XceI	RCATGY	1 cut(s)	141
XspI	CTAG	5 cut(s)	50, 183, 200, 248, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.