FvH4_2g05370

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006757
Physical Location & Seq
Reverse (-)
4429530 .. 4431253
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05370.t1

Sequence Viewer

Length: 948 bp
ATGATGAGGAGGACAGAAACCTCATTCCTGGCCTTTCTTATTCTTCTTCCTCTAGTAGTAGCTGACTTACGAGTTGGCTTCTACAGTGCTACATGCCCAAAAGCCGAACAAATCATCCAACAAGTCGTCCAGAAAAAATTCTCCAGCGATCCATCCATAACCGCTGCTTTACTTCGCATGCACTTCCATGACTGCTTTGTCAGAGGTTGTGATGCTTCCATTCTTATTGACTCCACCAAGAAAAAGGCGTCTGAGAAAACCGCAGGGCCAAACTTGACTGTAAGAGGGTTTGAGGTGATTGACGAGGCCAAGAAAGCACTTGAGGCTGCATGCCCTTCAACAGTCTCCTGCGCTGATATCATAACCCTCGCGACTAGAGATTCAGTCGTTCTAGCCGGAGGCCCGAGCTACAAGTCACCTACCGGACGGCGTGACGGGCTAGTATCCAACCCCAATGACGTCAACTTGCCCGGTCCGTCCTTCTCCGTGTCTCAGGCATTGCAGTCTTTCACAGACAAAGGAATGACTCTGAATGATATGGTGACTCTTTTGGGTGCACACACAGTTGGTGTTGCGCATTGTAGCTTTTTTGAAGATAGGCTCTCCAACTTTCAAGGGACAGGCTCTCCTGATCCTTCCATGGACCCAACTCTGGTTACTAAGTTGAAGAATATCTGCGCAGGACCTAATGATCCTACAGCATTTTTGGACCAAAATACATCATTTGCCTTTGATAATCAATATTATAACCAGGTTAATTTGAAGAGAGGTGTGATGCAGATTGACCAGGAGCTAGGTGTGGACAAATCAACGGCAGGTATTGTTTCTGGGTTTGCATCCAATGGTGCCAGATTCAGTCAGAGTTTTGCAACTGCTATGTTAAAGATGGGCAGCCTTCAGGATGGAAATCCCGGTGAAATCAGGAAAAATTGTAGAGTTTTTAATTAA

Protein Analysis

316

Amino Acids

33.93

Weight (kDa)

7.54

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 40 - 281 2.3e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AasI GACNNNNNNGTC 1 cut(s) 197
AatII GACGTC 1 cut(s) 462
Acc16I TGCGCA 2 cut(s) 576, 679
Acc36I ACCTGC 1 cut(s) 806
AccB1I GGYRCC 1 cut(s) 845
AccII CGCG 1 cut(s) 371
AciI CCGC 2 cut(s) 162, 261
AclWI GGATC 3 cut(s) 143, 626, 686
AcsI RAATTY 1 cut(s) 137
AcuI CTGAAG 1 cut(s) 881
AcyI GRCGYC 2 cut(s) 248, 459
AfiI CCNNNNNNNGG 1 cut(s) 652
AgsI TTSAA 5 cut(s) 339, 593, 614, 667, 763
AjnI CCWGG 3 cut(s) 27, 750, 786
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 4 cut(s) 62, 408, 585, 793
AluI AGCT 4 cut(s) 62, 408, 585, 793
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 2 cut(s) 349, 495
Alw44I GTGCAC 1 cut(s) 555
AlwI GGATC 3 cut(s) 143, 626, 686
Ama87I CYCGRG 1 cut(s) 403
AoxI GGCC 4 cut(s) 30, 266, 306, 400
ApaLI GTGCAC 1 cut(s) 555
ApeKI GCWGC 3 cut(s) 164, 326, 891
ApoI RAATTY 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 137
AspLEI GCGC 3 cut(s) 353, 577, 680
AspS9I GGNCC 6 cut(s) 266, 401, 473, 643, 683, 709
AsuC2I CCSGG 2 cut(s) 471, 912
AsuHPI GGTGA 4 cut(s) 307, 408, 553, 926
AvaI CYCGRG 1 cut(s) 403
AvaII GGWCC 4 cut(s) 473, 643, 683, 709
BaeGI GKGCMC 1 cut(s) 559
BanI GGYRCC 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 3 cut(s) 151, 313, 903
BccI CCATC 3 cut(s) 160, 880, 896
BceAI ACGGC 2 cut(s) 443, 828
BciT130I CCWGG 3 cut(s) 29, 752, 788
BciVI GTATCC 1 cut(s) 454
BcnI CCSGG 2 cut(s) 471, 912
BcoDI GTCTC 2 cut(s) 349, 495
BfaI CTAG 5 cut(s) 53, 375, 392, 440, 794
BfmI CTRYAG 2 cut(s) 82, 696
BfuAI ACCTGC 1 cut(s) 806
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 3 cut(s) 165, 327, 892
BlsI GCNGC 3 cut(s) 166, 328, 893
Bme1390I CCNGG 5 cut(s) 29, 471, 752, 788, 912
Bme18I GGWCC 4 cut(s) 473, 643, 683, 709
BmeT110I CYCGRG 1 cut(s) 403
BmgT120I GGNCC 6 cut(s) 266, 401, 473, 643, 683, 709
BmiI GGNNCC 2 cut(s) 645, 847
BmrFI CCNGG 5 cut(s) 29, 471, 752, 788, 912
BmsI GCATC 3 cut(s) 202, 765, 845
BpmI CTGGAG 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 2 cut(s) 471, 912
BsaBI GATNNNNATC 1 cut(s) 906
BsaHI GRCGYC 2 cut(s) 248, 459
BsaJI CCNNGG 1 cut(s) 639
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse3DI GCAATG 1 cut(s) 497
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 3 cut(s) 29, 752, 788
BseDI CCNNGG 1 cut(s) 639
BseGI GGATG 4 cut(s) 114, 152, 836, 907
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 243, 506
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 3 cut(s) 151, 313, 903
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 4 cut(s) 32, 268, 308, 402
BshNI GGYRCC 1 cut(s) 845
BsiHKAI GWGCWC 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 403
BsiSI CCGG 4 cut(s) 396, 423, 471, 912
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 2 cut(s) 349, 495
BsmFI GGGAC 1 cut(s) 631
BsnI GGCC 4 cut(s) 32, 268, 308, 402
BsoBI CYCGRG 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 3 cut(s) 148, 631, 691
Bsp19I CCATGG 1 cut(s) 639
Bsp68I TCGCGA 1 cut(s) 371
BspACI CCGC 2 cut(s) 162, 261
BspANI GGCC 4 cut(s) 32, 268, 308, 402
BspCNI CTCAG 2 cut(s) 244, 505
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 645, 847
BspMI ACCTGC 1 cut(s) 806
BspPI GGATC 3 cut(s) 143, 626, 686
BspT107I GGYRCC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 639
BssMI GATC 3 cut(s) 148, 631, 691
BssNI GRCGYC 2 cut(s) 248, 459
BssT1I CCWWGG 1 cut(s) 639
Bst2UI CCWGG 3 cut(s) 29, 752, 788
Bst4CI ACNGT 4 cut(s) 86, 280, 343, 565
Bst6I CTCTTC 1 cut(s) 758
BstACI GRCGYC 2 cut(s) 248, 459
BstC8I GCNNGC 2 cut(s) 179, 331
BstDEI CTNAG 3 cut(s) 252, 492, 660
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 4 cut(s) 114, 152, 836, 907
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 3 cut(s) 353, 577, 680
BstKTI GATC 3 cut(s) 151, 634, 694
BstMAI GTCTC 2 cut(s) 349, 495
BstMBI GATC 3 cut(s) 148, 631, 691
BstMWI GCNNNNNNNGC 3 cut(s) 314, 323, 436
BstNI CCWGG 3 cut(s) 29, 752, 788
BstNSI RCATGY 3 cut(s) 96, 181, 333
BstSCI CCNGG 5 cut(s) 27, 469, 750, 786, 910
BstSFI CTRYAG 2 cut(s) 82, 696
BstSLI GKGCMC 1 cut(s) 559
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 151, 313, 903
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 4 cut(s) 32, 268, 308, 402
BtgI CCRYGG 1 cut(s) 639
BtsCI GGATG 4 cut(s) 114, 152, 836, 907
BtsIMutI CAGTG 1 cut(s) 91
BtuMI TCGCGA 1 cut(s) 371
BveI ACCTGC 1 cut(s) 806
Cac8I GCNNGC 2 cut(s) 179, 331
CfoI GCGC 3 cut(s) 353, 577, 680
Cfr13I GGNCC 6 cut(s) 266, 401, 473, 643, 683, 709
CpoI CGGWCCG 1 cut(s) 473
CseI GACGC 1 cut(s) 237
CsiI ACCWGGT 1 cut(s) 750
CspI CGGWCCG 1 cut(s) 473
CviAII CATG 5 cut(s) 93, 178, 188, 330, 640
DdeI CTNAG 3 cut(s) 252, 492, 660
DpnI GATC 3 cut(s) 150, 633, 693
DpnII GATC 3 cut(s) 148, 631, 691
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 758
EarI CTCTTC 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 639
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 4 cut(s) 473, 643, 683, 709
Eco57I CTGAAG 1 cut(s) 881
Eco88I CYCGRG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 683
EcoRII CCWGG 3 cut(s) 27, 750, 786
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 639
FaeI CATG 5 cut(s) 96, 181, 191, 333, 643
FaqI GGGAC 1 cut(s) 631
FatI CATG 5 cut(s) 92, 177, 187, 329, 639
Fnu4HI GCNGC 3 cut(s) 165, 327, 892
FokI GGATG 4 cut(s) 101, 139, 823, 914
Fsp4HI GCNGC 3 cut(s) 165, 327, 892
FspBI CTAG 5 cut(s) 53, 375, 392, 440, 794
FspI TGCGCA 2 cut(s) 576, 679
GlaI GCGC 3 cut(s) 352, 576, 679
GluI GCNGC 3 cut(s) 165, 327, 892
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 4 cut(s) 32, 268, 308, 402
HapII CCGG 4 cut(s) 396, 423, 471, 912
HgaI GACGC 1 cut(s) 237
HhaI GCGC 3 cut(s) 353, 577, 680
Hin1I GRCGYC 2 cut(s) 248, 459
Hin1II CATG 5 cut(s) 96, 181, 191, 333, 643
Hin6I GCGC 3 cut(s) 351, 575, 678
HinP1I GCGC 3 cut(s) 351, 575, 678
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 5 cut(s) 230, 380, 526, 544, 852
HpaII CCGG 4 cut(s) 396, 423, 471, 912
HphI GGTGA 4 cut(s) 307, 408, 553, 926
Hpy166II GTNNAC 3 cut(s) 463, 557, 802
Hpy188I TCNGA 4 cut(s) 203, 253, 531, 861
Hpy188III TCNNGA 5 cut(s) 130, 370, 629, 899, 922
Hpy8I GTNNAC 3 cut(s) 463, 557, 802
HpyAV CCTTC 4 cut(s) 345, 490, 645, 905
HpyCH4III ACNGT 4 cut(s) 86, 280, 343, 565
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 7 cut(s) 181, 329, 502, 557, 778, 836, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 323, 436
HpyF3I CTNAG 3 cut(s) 252, 492, 660
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 2 cut(s) 248, 459
Hsp92II CATG 5 cut(s) 96, 181, 191, 333, 643
HspAI GCGC 3 cut(s) 351, 575, 678
Kzo9I GATC 3 cut(s) 148, 631, 691
LmnI GCTCC 1 cut(s) 790
Lsp1109I GCAGC 3 cut(s) 151, 313, 903
LweI GCATC 3 cut(s) 202, 765, 845
MabI ACCWGGT 1 cut(s) 750
MaeI CTAG 5 cut(s) 53, 375, 392, 440, 794
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 4 cut(s) 414, 431, 541, 655
MalI GATC 3 cut(s) 150, 633, 693
MboI GATC 3 cut(s) 148, 631, 691
MboII GAAGA 5 cut(s) 35, 38, 605, 679, 775
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 4 cut(s) 137, 757, 928, 943
MlyI GAGTC 3 cut(s) 224, 520, 538
MmeI TCCRAC 3 cut(s) 142, 471, 630
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 4 cut(s) 756, 881, 942, 946
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 4 cut(s) 396, 423, 471, 912
MspR9I CCNGG 5 cut(s) 29, 471, 752, 788, 912
MvaI CCWGG 3 cut(s) 29, 752, 788
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 3 cut(s) 314, 323, 436
NciI CCSGG 2 cut(s) 471, 912
NcoI CCATGG 1 cut(s) 639
NdeII GATC 3 cut(s) 148, 631, 691
NlaIII CATG 5 cut(s) 96, 181, 191, 333, 643
NlaIV GGNNCC 2 cut(s) 645, 847
NmuCI GTSAC 3 cut(s) 414, 431, 541
NruI TCGCGA 1 cut(s) 371
NsbI TGCGCA 2 cut(s) 576, 679
NspI RCATGY 3 cut(s) 96, 181, 333
PacI TTAATTAA 1 cut(s) 946
PaeI GCATGC 2 cut(s) 181, 333
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 380, 852
PkrI GCNGC 3 cut(s) 166, 328, 893
PleI GAGTC 3 cut(s) 224, 520, 538
PpsI GAGTC 3 cut(s) 224, 520, 538
PpuMI RGGWCCY 1 cut(s) 683
PsiI TTATAA 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 683
Psp6I CCWGG 3 cut(s) 27, 750, 786
PspGI CCWGG 3 cut(s) 27, 750, 786
PspN4I GGNNCC 2 cut(s) 645, 847
PspPI GGNCC 6 cut(s) 266, 401, 473, 643, 683, 709
PspPPI RGGWCCY 1 cut(s) 683
RruI TCGCGA 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 186
Rsr2I CGGWCCG 1 cut(s) 473
RsrII CGGWCCG 1 cut(s) 473
SaqAI TTAA 4 cut(s) 756, 881, 942, 946
SatI GCNGC 3 cut(s) 165, 327, 892
Sau3AI GATC 3 cut(s) 148, 631, 691
Sau96I GGNCC 6 cut(s) 266, 401, 473, 643, 683, 709
SchI GAGTC 3 cut(s) 224, 520, 538
ScrFI CCNGG 5 cut(s) 29, 471, 752, 788, 912
SduI GDGCHC 1 cut(s) 559
SexAI ACCWGGT 1 cut(s) 750
SfaNI GCATC 3 cut(s) 202, 765, 845
SfcI CTRYAG 2 cut(s) 82, 696
SinI GGWCC 4 cut(s) 473, 643, 683, 709
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 2 cut(s) 181, 333
Sse9I AATT 4 cut(s) 137, 757, 928, 943
SsiI CCGC 2 cut(s) 162, 261
SspI AATATT 1 cut(s) 743
SspMI CTAG 5 cut(s) 53, 375, 392, 440, 794
StyD4I CCNGG 5 cut(s) 27, 469, 750, 786, 910
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 4 cut(s) 86, 280, 343, 565
TaiI ACGT 1 cut(s) 462
TasI AATT 4 cut(s) 137, 757, 928, 943
TfiI GAWTC 2 cut(s) 380, 852
Tru1I TTAA 4 cut(s) 756, 881, 942, 946
Tru9I TTAA 4 cut(s) 756, 881, 942, 946
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 3 cut(s) 414, 431, 541
TseI GCWGC 3 cut(s) 164, 326, 891
Tsp45I GTSAC 3 cut(s) 414, 431, 541
TspGWI ACGGA 2 cut(s) 465, 475
TspRI CASTG 1 cut(s) 91
VneI GTGCAC 1 cut(s) 555
VpaK11BI GGWCC 4 cut(s) 473, 643, 683, 709
XapI RAATTY 1 cut(s) 137
XceI RCATGY 3 cut(s) 96, 181, 333
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 5 cut(s) 53, 375, 392, 440, 794
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.