Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006757

Physical Location & Seq

Genomic Coordinates Forward (+)

989088 .. 990715

Gene Structure 1628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1010300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAAGATCATTAAGACTTCGATCCTAGCACTTTTCTTTCTTCTTCCTTTTGTAGTGGCTGACCTTAGGGTTAATTTCTATAATGCTACCTGCCCCCAAGCTGAATCAATCATACGTCAAGTTGTGCAGAAACGGTTTGCAACTGATTCATCTATCACTGGGGCCTTGCTTCGCATGCATTTCCATGACTGCTTTGTTAGGGGTTGTGATGCATCCATACTTATAGATTCAACCAAAAAGAAGTCATCTGAAAAATCGGCAGGGCCAAACTTGACTGTACGAGGATACGAGCTTATTGACGAGATCAAGAAAAGCCTGGAGGCTGCATGCCCTTCAACTGTATCCTGTGCCGATATTGTAACCCTAGCAACCCGGGATTCAGTGGTTCTTGCAGGAGGGCCAAACTATGCTGCTCCAACAGGACGCCGTGACGGGCTCGTATCAAACCCTACCGACGTTAACTTGCCCGGTCCATCATTTTCAGTATCTCAGGCATTGCGATCTTTCAATGTCAAAGGGATGACCCTAAATGACATGGTGACCCTATTGGGTGCACACACGGTTGGTTTTGCCCACTGTAATTTTTTCCAAGATAGGCTCTCAAATTTTCAAGGGTCAGGATCTCCTGATCCTTCAATGGATCCAGCTTTGGTTTCAAAGTTGAGCACACTTTGTGCAGCTAGTAACAACCCCACTACATTTTTGGACCAAAACACATCTTCCACTTTTGATAACCAGTTCTACAACCAGATTCTTTTGAAAAGAGGTGTGTTGCAGATTGACCAAGAGCTTGCTTCGGATACATCTACGGCTGGTATTGTTTCTGGATTTGCATCAAACGGCGTGAGGTTCAGTCAGAGCTTTGCAACTGCTATGTTAAAGATGGGGAGTCTCCAGGTTCTGGTTGGAAATGGGGGTGAAATTAGGAAAAACTGTAGGGCTTTTAATCCTGCCAAGTCAAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

323

Amino Acids

34.59

Weight (kDa)

8.9

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	38 - 280	8e-87	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03670 AT4G26010 AT4G26010 AT5G17820 AT5G17820
fragaria_vesca	FvH4_2g05370
malus_domestica	MD14G1010300.v1.1
prunus_persica	Prupe.7G016500_v2.0.a1
pyrus_communis	pycom14g00870
rosa_chinensis	RchiOBHm_Chr3g0495941 RchiOBHm_Chr3g0495951
rosa_laevigata	RLG00000022577
rosa_multiflora	Rmu_sc0000334.1_g000004 Rmu_sc0000334.1_g000021 Rmu_sc0003613.1_g000015
rosa_roxburghii	Rroxscaffold_6G00389830 Rroxscaffold_6G00389880
rosa_rugosa	Rorug03G0277900
rosa_samantha	Rh3AG325200 Rh3BG361300 Rh3BG361500 Rh3CG357500 Rh3CG357600 Rh3DG360700
rosa_wichuraiana	Rw3G028410 Rw3G028430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AccB7I	CCANNNNNTGG	1 cut(s)	901
AclWI	GGATC	5 cut(s)	16, 623, 628, 635, 648
AcsI	RAATTY	1 cut(s)	604
AcyI	GRCGYC	1 cut(s)	424
AdeI	CACNNNGTG	1 cut(s)	674
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	901
AgsI	TTSAA	7 cut(s)	231, 336, 508, 611, 636, 657, 760
AjnI	CCWGG	2 cut(s)	315, 894
AluBI	AGCT	6 cut(s)	101, 292, 647, 680, 790, 861
AluI	AGCT	6 cut(s)	101, 292, 647, 680, 790, 861
Alw21I	GWGCWC	2 cut(s)	556, 668
Alw26I	GTCTC	1 cut(s)	896
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	5 cut(s)	16, 623, 628, 635, 648
AlwNI	CAGNNNCTG	1 cut(s)	901
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	3 cut(s)	162, 263, 398
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	3 cut(s)	323, 410, 677
ApoI	RAATTY	1 cut(s)	604
AspS9I	GGNCC	5 cut(s)	162, 263, 398, 470, 706
AsuC2I	CCSGG	3 cut(s)	373, 374, 468
AsuHPI	GGTGA	2 cut(s)	550, 929
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	2 cut(s)	470, 706
AxyI	CCTNAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	556
BamHI	GGATCC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	556, 668
BbvI	GCAGC	3 cut(s)	310, 397, 689
BccI	CCATC	2 cut(s)	481, 877
BceAI	ACGGC	3 cut(s)	411, 825, 856
BciT130I	CCWGG	2 cut(s)	317, 896
BciVI	GTATCC	3 cut(s)	278, 352, 793
BcnI	CCSGG	3 cut(s)	373, 374, 468
BcoDI	GTCTC	1 cut(s)	896
BfaI	CTAG	3 cut(s)	26, 365, 681
BfmI	CTRYAG	1 cut(s)	934
BfuAI	ACCTGC	1 cut(s)	98
BfuI	GTATCC	3 cut(s)	278, 352, 793
BisI	GCNGC	3 cut(s)	324, 411, 678
BlsI	GCNGC	3 cut(s)	325, 412, 679
Bme1390I	CCNGG	5 cut(s)	317, 373, 374, 468, 896
Bme18I	GGWCC	2 cut(s)	470, 706
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	5 cut(s)	162, 263, 398, 470, 706
BmiI	GGNNCC	2 cut(s)	163, 642
BmrFI	CCNGG	5 cut(s)	317, 373, 374, 468, 896
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	199, 221, 842
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	338, 878
BpuMI	CCSGG	3 cut(s)	373, 374, 468
BsaBI	GATNNNNATC	1 cut(s)	832
BsaHI	GRCGYC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	901
Bse1I	ACTGG	2 cut(s)	163, 736
Bse21I	CCTNAGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	832
BseBI	CCWGG	2 cut(s)	317, 896
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	212, 525
BseJI	GATNNNNATC	1 cut(s)	832
BseLI	CCNNNNNNNGG	1 cut(s)	901
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	2 cut(s)	163, 736
BseSI	GKGCMC	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	310, 397, 689
BsgI	GTGCAG	2 cut(s)	146, 696
BshFI	GGCC	3 cut(s)	164, 265, 400
BsiHKAI	GWGCWC	2 cut(s)	556, 668
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	373, 468
BslI	CCNNNNNNNGG	1 cut(s)	901
BsmAI	GTCTC	1 cut(s)	896
BsnI	GGCC	3 cut(s)	164, 265, 400
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	3 cut(s)	438, 556, 668
Bsp143I	GATC	7 cut(s)	6, 21, 303, 500, 620, 628, 640
BspANI	GGCC	3 cut(s)	164, 265, 400
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	163, 642
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	5 cut(s)	16, 623, 628, 635, 648
BsrDI	GCAATG	1 cut(s)	494
BsrI	ACTGG	2 cut(s)	163, 736
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	7 cut(s)	6, 21, 303, 500, 620, 628, 640
BssNI	GRCGYC	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	317, 896
Bst4CI	ACNGT	6 cut(s)	135, 277, 340, 562, 578, 935
BstACI	GRCGYC	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	176, 328, 792
BstDEI	CTNAG	2 cut(s)	65, 489
BstEII	GGTNACC	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	212, 525
BstKTI	GATC	7 cut(s)	9, 24, 306, 503, 623, 631, 643
BstMAI	GTCTC	1 cut(s)	896
BstMBI	GATC	7 cut(s)	6, 21, 303, 500, 620, 628, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	2 cut(s)	317, 896
BstNSI	RCATGY	2 cut(s)	178, 330
BstPI	GGTNACC	1 cut(s)	538
BstSCI	CCNGG	5 cut(s)	315, 371, 372, 466, 894
BstSFI	CTRYAG	1 cut(s)	934
BstSLI	GKGCMC	1 cut(s)	556
BstV1I	GCAGC	3 cut(s)	310, 397, 689
BstX2I	RGATCY	2 cut(s)	620, 640
BstYI	RGATCY	2 cut(s)	620, 640
Bsu36I	CCTNAGG	1 cut(s)	65
BsuI	GTATCC	3 cut(s)	278, 352, 793
BsuRI	GGCC	3 cut(s)	164, 265, 400
BtsCI	GGATG	2 cut(s)	212, 525
BtsIMutI	CAGTG	3 cut(s)	156, 387, 574
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	176, 328, 792
CaiI	CAGNNNCTG	1 cut(s)	901
Cfr13I	GGNCC	5 cut(s)	162, 263, 398, 470, 706
Cfr9I	CCCGGG	1 cut(s)	372
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	4 cut(s)	175, 185, 327, 535
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	65, 489
DpnI	GATC	7 cut(s)	8, 23, 305, 502, 622, 630, 642
DpnII	GATC	7 cut(s)	6, 21, 303, 500, 620, 628, 640
DraIII	CACNNNGTG	1 cut(s)	674
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	470, 706
Eco81I	CCTNAGG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	315, 894
EcoT22I	ATGCAT	2 cut(s)	180, 214
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	4 cut(s)	178, 188, 330, 538
FatI	CATG	4 cut(s)	174, 184, 326, 534
Fnu4HI	GCNGC	3 cut(s)	324, 411, 678
FokI	GGATG	2 cut(s)	199, 532
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	3 cut(s)	324, 411, 678
FspBI	CTAG	3 cut(s)	26, 365, 681
GluI	GCNGC	3 cut(s)	324, 411, 678
GsuI	CTGGAG	2 cut(s)	338, 878
HaeIII	GGCC	3 cut(s)	164, 265, 400
HapII	CCGG	2 cut(s)	373, 468
HgaI	GACGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	178, 188, 330, 538
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	6 cut(s)	104, 146, 227, 377, 751, 889
HpaI	GTTAAC	1 cut(s)	460
HpaII	CCGG	2 cut(s)	373, 468
HphI	GGTGA	2 cut(s)	550, 929
Hpy166II	GTNNAC	2 cut(s)	460, 554
Hpy188I	TCNGA	3 cut(s)	250, 799, 858
Hpy188III	TCNNGA	4 cut(s)	307, 618, 626, 825
Hpy8I	GTNNAC	2 cut(s)	460, 554
Hpy99I	CGWCG	1 cut(s)	458
HpyAV	CCTTC	2 cut(s)	342, 642
HpyCH4III	ACNGT	6 cut(s)	135, 277, 340, 562, 578, 935
HpyCH4IV	ACGT	2 cut(s)	115, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	2 cut(s)	65, 489
HpySE526I	ACGT	2 cut(s)	115, 456
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	4 cut(s)	178, 188, 330, 538
KspAI	GTTAAC	1 cut(s)	460
Kzo9I	GATC	7 cut(s)	6, 21, 303, 500, 620, 628, 640
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	3 cut(s)	310, 397, 689
LweI	GCATC	3 cut(s)	199, 221, 842
MaeI	CTAG	3 cut(s)	26, 365, 681
MaeII	ACGT	2 cut(s)	115, 456
MaeIII	GTNAC	4 cut(s)	358, 428, 538, 683
MalI	GATC	7 cut(s)	8, 23, 305, 502, 622, 630, 642
MboI	GATC	7 cut(s)	6, 21, 303, 500, 620, 628, 640
MboII	GAAGA	4 cut(s)	16, 32, 35, 711
MflI	RGATCY	2 cut(s)	620, 640
MhlI	GDGCHC	3 cut(s)	438, 556, 668
MluCI	AATT	4 cut(s)	73, 580, 604, 921
MlyI	GAGTC	1 cut(s)	898
MmeI	TCCRAC	2 cut(s)	440, 886
MnlI	CCTC	5 cut(s)	275, 313, 389, 758, 840
Mph1103I	ATGCAT	2 cut(s)	180, 214
MseI	TTAA	5 cut(s)	12, 72, 459, 878, 945
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	2 cut(s)	373, 468
MspR9I	CCNGG	5 cut(s)	317, 373, 374, 468, 896
MvaI	CCWGG	2 cut(s)	317, 896
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	3 cut(s)	373, 374, 468
NdeII	GATC	7 cut(s)	6, 21, 303, 500, 620, 628, 640
NlaIII	CATG	4 cut(s)	178, 188, 330, 538
NlaIV	GGNNCC	2 cut(s)	163, 642
NmuCI	GTSAC	2 cut(s)	428, 538
NsiI	ATGCAT	2 cut(s)	180, 214
NspI	RCATGY	2 cut(s)	178, 330
PaeI	GCATGC	2 cut(s)	178, 330
PfeI	GAWTC	5 cut(s)	104, 146, 227, 377, 751
PflMI	CCANNNNNTGG	1 cut(s)	901
PkrI	GCNGC	3 cut(s)	325, 412, 679
PleI	GAGTC	1 cut(s)	897
PpsI	GAGTC	1 cut(s)	897
Psp6I	CCWGG	2 cut(s)	315, 894
PspEI	GGTNACC	1 cut(s)	538
PspGI	CCWGG	2 cut(s)	315, 894
PspN4I	GGNNCC	2 cut(s)	163, 642
PspPI	GGNCC	5 cut(s)	162, 263, 398, 470, 706
PstNI	CAGNNNCTG	1 cut(s)	901
PsuI	RGATCY	2 cut(s)	620, 640
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	5 cut(s)	12, 72, 459, 878, 945
SatI	GCNGC	3 cut(s)	324, 411, 678
Sau3AI	GATC	7 cut(s)	6, 21, 303, 500, 620, 628, 640
Sau96I	GGNCC	5 cut(s)	162, 263, 398, 470, 706
SchI	GAGTC	1 cut(s)	898
ScrFI	CCNGG	5 cut(s)	317, 373, 374, 468, 896
SduI	GDGCHC	3 cut(s)	438, 556, 668
SfaNI	GCATC	3 cut(s)	199, 221, 842
SfcI	CTRYAG	1 cut(s)	934
SinI	GGWCC	2 cut(s)	470, 706
SmaI	CCCGGG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	183
SphI	GCATGC	2 cut(s)	178, 330
Sse9I	AATT	4 cut(s)	73, 580, 604, 921
SspMI	CTAG	3 cut(s)	26, 365, 681
StyD4I	CCNGG	5 cut(s)	315, 371, 372, 466, 894
TaaI	ACNGT	6 cut(s)	135, 277, 340, 562, 578, 935
TaiI	ACGT	2 cut(s)	118, 459
TaqI	TCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	73, 580, 604, 921
TfiI	GAWTC	5 cut(s)	104, 146, 227, 377, 751
Tru1I	TTAA	5 cut(s)	12, 72, 459, 878, 945
Tru9I	TTAA	5 cut(s)	12, 72, 459, 878, 945
TscAI	CASTG	3 cut(s)	163, 387, 581
TseFI	GTSAC	2 cut(s)	428, 538
TseI	GCWGC	3 cut(s)	323, 410, 677
Tsp45I	GTSAC	2 cut(s)	428, 538
TspDTI	ATGAA	2 cut(s)	17, 138
TspMI	CCCGGG	1 cut(s)	372
TspRI	CASTG	3 cut(s)	163, 387, 581
Van91I	CCANNNNNTGG	1 cut(s)	901
VneI	GTGCAC	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	470, 706
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	2 cut(s)	178, 330
XcmI	CCANNNNNNNNNTGG	2 cut(s)	700, 902
XmaI	CCCGGG	1 cut(s)	372
XspI	CTAG	3 cut(s)	26, 365, 681
Zsp2I	ATGCAT	2 cut(s)	180, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.